Wall clock time and date at job start Tue Mar 31 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.00157 * 2 1 4 4 C 1.54338 * 109.77866 * 121.15870 * 2 1 3 5 5 C 1.55151 * 103.01992 * 97.49729 * 4 2 1 6 6 H 1.09005 * 111.00760 * 277.23481 * 5 4 2 7 7 N 1.46498 * 111.00429 * 153.38450 * 5 4 2 8 8 C 1.36944 * 120.00109 * 161.34852 * 7 5 4 9 9 H 1.08004 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00153 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99955 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00005 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47433 * 59.99570 * 12 10 8 14 14 H 1.48509 * 109.46972 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47092 * 299.99270 * 12 10 8 16 16 C 1.54906 * 101.58405 * 35.30784 * 5 4 2 17 17 N 1.47019 * 109.88465 * 238.89931 * 2 1 3 18 18 C 1.34773 * 125.64879 * 59.56239 * 17 2 1 19 19 O 1.21277 * 119.99845 * 359.71744 * 18 17 2 20 20 C 1.50701 * 119.99977 * 179.71786 * 18 17 2 21 21 N 1.46904 * 109.47065 * 179.97438 * 20 18 17 22 22 C 1.47845 * 110.99935 * 49.15747 * 21 20 18 23 23 C 1.54908 * 104.79717 * 146.36210 * 22 21 20 24 24 C 1.55147 * 101.65049 * 322.93105 * 23 22 21 25 25 C 1.47439 * 110.99753 * 169.99748 * 21 20 18 26 26 H 1.08999 * 109.47665 * 179.64341 * 1 2 3 27 27 H 1.08997 * 109.47399 * 299.65220 * 1 2 3 28 28 H 1.09008 * 109.47062 * 59.64680 * 1 2 3 29 29 H 1.09004 * 110.84422 * 339.03153 * 4 2 1 30 30 H 1.08997 * 110.67302 * 215.88311 * 4 2 1 31 31 H 0.96996 * 120.00579 * 341.35047 * 7 5 4 32 32 H 0.97003 * 120.00242 * 179.97438 * 11 10 8 33 33 H 1.09001 * 110.37136 * 204.15137 * 16 5 4 34 34 H 1.08998 * 110.46052 * 81.87697 * 16 5 4 35 35 H 1.09002 * 109.47461 * 59.99906 * 20 18 17 36 36 H 1.08999 * 109.47026 * 300.00070 * 20 18 17 37 37 H 1.09005 * 110.37246 * 27.53168 * 22 21 20 38 38 H 1.08998 * 110.37354 * 265.19404 * 22 21 20 39 39 H 1.08996 * 110.99351 * 204.83721 * 23 22 21 40 40 H 1.09002 * 110.98650 * 81.01419 * 23 22 21 41 41 H 1.09000 * 110.70281 * 154.03642 * 24 23 22 42 42 H 1.09000 * 110.70143 * 277.26807 * 24 23 22 43 43 H 1.09003 * 109.88723 * 117.34017 * 25 21 20 44 44 H 1.08997 * 110.02921 * 356.22736 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0522 -0.7515 1.2428 5 6 2.3561 -2.1696 0.6917 6 1 1.4521 -2.7778 0.6582 7 7 3.3998 -2.8274 1.4817 8 6 3.5510 -4.1871 1.4196 9 1 2.9005 -4.7744 0.7885 10 6 4.5396 -4.8104 2.1685 11 7 5.3321 -4.0946 2.9379 12 14 4.7463 -6.6650 2.0832 13 1 5.0486 -7.0657 0.6856 14 1 5.8635 -7.0798 2.9693 15 1 3.4915 -7.3237 2.5267 16 6 2.8612 -1.8466 -0.7366 17 7 2.0300 -0.7141 -1.1838 18 6 1.7754 -0.3846 -2.4656 19 8 1.0748 0.5726 -2.7180 20 6 2.3614 -1.2057 -3.5853 21 7 1.9382 -0.6462 -4.8760 22 6 2.1650 0.8141 -4.9204 23 6 2.5286 1.1134 -6.3961 24 6 3.3709 -0.1345 -6.7705 25 6 2.6763 -1.2699 -5.9896 26 1 -0.3634 -1.0276 -0.0064 27 1 -0.3634 0.5084 0.8930 28 1 -0.3634 0.5193 -0.8869 29 1 1.2883 -0.7949 2.0192 30 1 2.9599 -0.2826 1.6227 31 1 3.9839 -2.3000 2.0487 32 1 6.0228 -4.5302 3.4615 33 1 2.7178 -2.7050 -1.3929 34 1 3.9125 -1.5596 -0.7131 35 1 2.0109 -2.2346 -3.5033 36 1 3.4492 -1.1860 -3.5194 37 1 2.9894 1.0903 -4.2629 38 1 1.2577 1.3478 -4.6374 39 1 3.1230 2.0237 -6.4750 40 1 1.6326 1.1791 -7.0134 41 1 3.3267 -0.3215 -7.8434 42 1 4.4032 -0.0157 -6.4411 43 1 1.9832 -1.7994 -6.6434 44 1 3.4223 -1.9631 -5.6012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989801076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:11 Heat of formation + Delta-G solvation = -11.271318 kcal Electronic energy + Delta-G solvation = -22814.753402 eV Core-core repulsion = 19574.316093 eV Total energy + Delta-G solvation = -3240.437309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25328 -38.74814 -37.07897 -34.20804 -32.59945 -31.49517 -31.19843 -28.93855 -28.36494 -26.56364 -25.44744 -23.88990 -22.00747 -21.28459 -20.91422 -20.03113 -18.71488 -17.36391 -16.99287 -16.21433 -15.70701 -15.61791 -14.97044 -14.68271 -14.22954 -13.80332 -13.43580 -13.38797 -13.23127 -13.02146 -12.92938 -12.65220 -12.37499 -12.28691 -11.90639 -11.76540 -11.47605 -11.40416 -11.19971 -11.05425 -10.96210 -10.82290 -10.76389 -10.64643 -10.32526 -10.03158 -9.80568 -9.40941 -9.03796 -8.40261 -8.30755 -7.13658 -5.89267 -3.20503 2.83151 3.10385 3.37001 3.42274 3.42783 3.97668 4.44477 4.52777 4.58507 4.73610 4.82704 5.10198 5.12001 5.20929 5.24879 5.28245 5.36901 5.43931 5.45249 5.55273 5.57650 5.62151 5.64819 5.76145 5.84064 5.84667 5.86568 6.07744 6.09151 6.09826 6.20833 6.22698 6.28000 6.43490 6.51018 6.63102 6.82529 6.89690 6.92319 7.58719 7.81648 8.28103 8.41392 9.40201 9.93754 10.28614 11.32620 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.004132 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.107467 B = 6774.188103 C = 7909.821896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.068 0.932 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.065 0.935 7 N -0.713 5.713 8 C -0.250 4.250 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.072 3.928 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.539 6.539 20 C 0.035 3.965 21 N -0.516 5.516 22 C 0.053 3.947 23 C -0.135 4.135 24 C -0.143 4.143 25 C 0.040 3.960 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.387 0.613 32 H 0.258 0.742 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 8.578 -13.906 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.086 0.914 4 C -0.175 4.175 5 C 0.062 3.938 6 H 0.082 0.918 7 N -0.353 5.353 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.054 4.054 17 N -0.344 5.344 18 C 0.316 3.684 19 O -0.416 6.416 20 C -0.096 4.096 21 N -0.241 5.241 22 C -0.074 4.074 23 C -0.174 4.174 24 C -0.182 4.182 25 C -0.088 4.088 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.222 0.778 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.093 8.785 -14.143 17.729 hybrid contribution 1.452 -0.899 0.309 1.735 sum -4.641 7.886 -13.834 16.586 Atomic orbital electron populations 1.22124 0.94990 1.02300 1.02400 1.21466 0.94424 0.95763 0.84637 0.91368 1.22980 1.01721 0.96917 0.95920 1.21263 0.92683 0.91284 0.88560 0.91757 1.42320 1.36973 1.04922 1.51072 1.19200 1.13381 0.83205 1.22348 0.91000 1.24766 0.98312 0.98054 0.99252 1.69648 1.22131 1.34582 1.31332 0.86261 0.77322 0.85157 0.77377 1.21136 1.21618 1.21099 1.23512 0.94834 0.87154 0.99905 1.48642 1.50249 1.31055 1.04501 1.20065 0.81016 0.84905 0.82435 1.90626 1.38816 1.29211 1.82974 1.22232 0.98850 0.99797 0.88741 1.63517 1.54774 1.04840 1.00926 1.23128 1.01597 0.88023 0.94627 1.22815 0.99864 0.97497 0.97178 1.22785 0.99197 0.95577 1.00604 1.22885 0.96220 0.96667 0.93034 0.92462 0.92073 0.91406 0.90117 0.90625 0.77841 0.93248 0.91373 0.91287 0.87814 0.91911 0.94307 0.88174 0.91107 0.90769 0.90815 0.91607 0.90254 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.05 37.15 0.34 -1.87 16 2 C 0.14 2.08 3.51 -66.95 -0.23 1.84 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.11 6.11 -24.89 -0.15 -2.26 16 5 C 0.17 3.19 3.69 -65.79 -0.24 2.95 16 6 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 7 N -0.71 -16.53 5.28 -51.35 -0.27 -16.80 16 8 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 12 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.07 1.19 6.38 -2.53 -0.02 1.17 16 17 N -0.61 -9.46 3.08 -163.02 -0.50 -9.97 16 18 C 0.53 8.29 7.16 -10.99 -0.08 8.21 16 19 O -0.54 -9.50 12.44 5.56 0.07 -9.43 16 20 C 0.03 0.47 4.32 -4.97 -0.02 0.44 16 21 N -0.52 -6.73 5.21 -232.69 -1.21 -7.95 16 22 C 0.05 0.68 4.95 -2.30 -0.01 0.67 16 23 C -0.14 -1.34 7.08 -24.59 -0.17 -1.51 16 24 C -0.14 -1.30 6.94 -24.91 -0.17 -1.47 16 25 C 0.04 0.41 6.87 -2.84 -0.02 0.39 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.03 6.74 -51.92 -0.35 0.68 16 29 H 0.08 1.17 7.83 -51.93 -0.41 0.76 16 30 H 0.08 1.18 7.99 -51.93 -0.42 0.77 16 31 H 0.39 9.58 7.71 -40.82 -0.31 9.26 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.07 1.09 7.48 -51.93 -0.39 0.70 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.31 7.85 -51.93 -0.41 0.90 16 36 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16 37 H 0.04 0.53 7.54 -51.93 -0.39 0.14 16 38 H 0.10 1.48 6.71 -51.93 -0.35 1.13 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.56 7.50 -51.93 -0.39 0.17 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -29.13 344.32 -9.66 -38.79 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.60 Total: 8.24 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.03 Total: 1.63 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -1.26 Total: -60.76 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.13 -9.66 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989801076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.519 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds