Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.00148 * 2 1 4 4 C 1.54340 * 109.98773 * 238.96442 * 2 1 3 5 5 C 1.55160 * 103.01916 * 218.66359 * 4 2 1 6 6 H 1.09004 * 111.00264 * 153.38054 * 5 4 2 7 7 N 1.46498 * 111.00833 * 277.23575 * 5 4 2 8 8 C 1.36933 * 120.00494 * 198.65387 * 7 5 4 9 9 H 1.08000 * 119.99301 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00555 * 179.97438 * 8 7 5 11 11 N 1.31611 * 120.00501 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99549 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47275 * 90.00194 * 12 10 8 14 14 H 1.48498 * 109.47082 * 210.00076 * 12 10 8 15 15 H 1.48494 * 109.47452 * 330.00197 * 12 10 8 16 16 C 1.54913 * 101.58325 * 35.31071 * 5 4 2 17 17 N 1.47027 * 109.88317 * 121.10006 * 2 1 3 18 18 C 1.34771 * 125.64698 * 298.39277 * 17 2 1 19 19 O 1.21287 * 120.00262 * 359.71617 * 18 17 2 20 20 C 1.50696 * 119.99951 * 179.71885 * 18 17 2 21 21 N 1.46900 * 109.47238 * 179.97438 * 20 18 17 22 22 C 1.48534 * 111.00336 * 52.60164 * 21 20 18 23 23 C 1.54933 * 103.22918 * 159.72037 * 22 21 20 24 24 C 1.54591 * 102.92615 * 322.58639 * 23 22 21 25 25 C 1.47906 * 111.00463 * 169.99874 * 21 20 18 26 26 H 1.09002 * 109.46993 * 300.35240 * 1 2 3 27 27 H 1.08992 * 109.47577 * 60.35528 * 1 2 3 28 28 H 1.09004 * 109.47233 * 180.35927 * 1 2 3 29 29 H 1.08996 * 110.84738 * 100.19918 * 4 2 1 30 30 H 1.08999 * 110.67118 * 337.04218 * 4 2 1 31 31 H 0.97007 * 119.99830 * 18.64664 * 7 5 4 32 32 H 0.96994 * 120.00522 * 179.97438 * 11 10 8 33 33 H 1.08998 * 110.36979 * 204.15210 * 16 5 4 34 34 H 1.08997 * 110.37009 * 81.82200 * 16 5 4 35 35 H 1.08996 * 109.47462 * 60.00142 * 20 18 17 36 36 H 1.09001 * 109.47050 * 299.99737 * 20 18 17 37 37 H 1.09004 * 110.66939 * 278.16097 * 22 21 20 38 38 H 1.09002 * 110.66619 * 41.28493 * 22 21 20 39 39 H 1.09008 * 110.72472 * 204.22643 * 23 22 21 40 40 H 1.09002 * 110.72089 * 80.94774 * 23 22 21 41 41 H 1.08993 * 110.31013 * 263.04721 * 24 23 22 42 42 H 1.08995 * 110.39092 * 140.91154 * 24 23 22 43 43 H 1.09003 * 109.91125 * 333.50977 * 25 21 20 44 44 H 1.08999 * 109.91852 * 94.80110 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 3.4806 -2.4156 -1.2793 7 7 4.4699 -0.6562 -0.6465 8 6 5.7188 -1.2116 -0.5635 9 1 5.8312 -2.2852 -0.5309 10 6 6.8403 -0.3947 -0.5212 11 7 8.0406 -0.9285 -0.4410 12 14 6.6458 1.4622 -0.5783 13 1 6.5163 1.9891 0.8040 14 1 7.8372 2.0650 -1.2281 15 1 5.4292 1.8089 -1.3560 16 6 2.8099 -1.8827 0.7367 17 7 2.0300 -0.7142 1.1839 18 6 1.8074 -0.3622 2.4657 19 8 1.1475 0.6236 2.7180 20 6 2.3784 -1.1936 3.5853 21 7 1.9974 -0.6046 4.8760 22 6 0.5291 -0.3932 4.9520 23 6 0.2639 -0.2914 6.4751 24 6 1.2434 -1.3307 7.0669 25 6 2.3321 -1.5142 5.9933 26 1 -0.3633 0.5193 0.8868 27 1 -0.3634 0.5083 -0.8931 28 1 -0.3634 -1.0277 0.0064 29 1 2.3596 -0.0450 -2.0192 30 1 1.3066 -1.4406 -1.6226 31 1 4.3689 0.3081 -0.6754 32 1 8.8243 -0.3577 -0.4118 33 1 3.6655 -2.0414 1.3931 34 1 2.1801 -2.7719 0.7114 35 1 3.4651 -1.2161 3.5034 36 1 1.9879 -2.2091 3.5195 37 1 0.2471 0.5321 4.4496 38 1 -0.0044 -1.2422 4.5245 39 1 -0.7675 -0.5583 6.7057 40 1 0.4956 0.7090 6.8408 41 1 0.7291 -2.2743 7.2492 42 1 1.6829 -0.9553 7.9909 43 1 2.3377 -2.5463 5.6428 44 1 3.3071 -1.2536 6.4049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989801077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -6.056296 kcal Electronic energy + Delta-G solvation = -23236.453731 eV Core-core repulsion = 19996.242562 eV Total energy + Delta-G solvation = -3240.211168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19279 -38.71995 -37.10390 -34.12406 -32.60897 -31.56390 -31.28920 -29.01773 -28.81634 -26.51506 -25.58333 -23.51512 -22.14682 -21.12710 -20.85424 -20.03793 -18.63510 -17.73261 -16.83440 -16.46113 -15.69733 -15.64643 -15.03776 -14.49207 -14.15403 -14.01303 -13.80293 -13.51508 -13.11281 -12.88275 -12.73104 -12.39464 -12.33951 -12.19597 -12.06367 -11.94267 -11.53987 -11.42754 -11.33299 -11.08532 -10.92906 -10.85897 -10.67381 -10.66116 -10.39271 -10.10192 -9.66902 -9.35194 -9.07176 -8.42243 -8.27712 -7.36796 -5.85732 -3.22757 2.90193 3.15927 3.34564 3.38957 3.44010 4.06240 4.53170 4.56336 4.61994 4.77268 4.87979 4.99456 5.06631 5.14898 5.23689 5.27258 5.28878 5.45581 5.47829 5.53507 5.56818 5.64664 5.68201 5.71867 5.75182 5.76326 5.88467 5.96883 6.01016 6.07984 6.11013 6.22786 6.28224 6.29526 6.46090 6.52224 6.69898 6.89932 6.95545 7.86224 7.88421 8.33144 8.48588 9.10423 9.83418 10.01861 11.31879 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.005208 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.281934 B = 5375.126491 C = 6261.569957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.070 0.930 4 C -0.140 4.140 5 C 0.175 3.825 6 H 0.079 0.921 7 N -0.737 5.737 8 C -0.252 4.252 9 H 0.093 0.907 10 C 0.012 3.988 11 N -0.929 5.929 12 Si 0.881 3.119 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.069 3.931 17 N -0.602 5.602 18 C 0.532 3.468 19 O -0.539 6.539 20 C 0.032 3.968 21 N -0.501 5.501 22 C 0.032 3.968 23 C -0.126 4.126 24 C -0.130 4.130 25 C 0.034 3.966 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.363 0.637 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.112 0.888 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.601 -2.858 7.870 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.088 0.912 4 C -0.179 4.179 5 C 0.063 3.937 6 H 0.097 0.903 7 N -0.378 5.378 8 C -0.382 4.382 9 H 0.110 0.890 10 C -0.184 4.184 11 N -0.576 5.576 12 Si 0.711 3.289 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.057 4.057 17 N -0.336 5.336 18 C 0.320 3.680 19 O -0.417 6.417 20 C -0.099 4.099 21 N -0.226 5.226 22 C -0.095 4.095 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.094 4.094 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.196 0.804 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.431 -1.982 8.117 18.433 hybrid contribution -0.211 0.408 -0.113 0.473 sum -16.642 -1.574 8.004 18.534 Atomic orbital electron populations 1.22115 0.95265 1.01769 1.02479 1.21468 0.93740 0.96528 0.84855 0.91173 1.23071 0.98315 1.00111 0.96391 1.21278 0.86088 0.94388 0.91924 0.90316 1.42692 1.01979 1.04008 1.89163 1.19028 0.81474 0.93861 1.43807 0.88965 1.24638 0.95089 0.97286 1.01434 1.69685 0.97090 1.34254 1.56558 0.86612 0.76936 0.87311 0.78034 1.20937 1.21616 1.20347 1.23367 0.94650 0.86871 1.00846 1.48460 1.52083 1.28617 1.04439 1.19993 0.80195 0.85437 0.82363 1.90578 1.40679 1.27544 1.82864 1.22200 1.02965 0.95891 0.88819 1.64661 1.15307 1.41863 1.00773 1.23511 0.87363 1.02815 0.95796 1.22527 0.98569 0.99702 0.95606 1.22389 0.96624 0.99322 0.98517 1.22938 0.99764 0.94841 0.91890 0.91557 0.92040 0.92836 0.89907 0.90314 0.80385 0.92909 0.89809 0.92400 0.87301 0.92142 0.87037 0.94812 0.91408 0.90792 0.91738 0.91070 0.93741 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.11 37.16 0.34 -1.71 16 2 C 0.14 2.08 3.45 -66.94 -0.23 1.85 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 4 C -0.14 -1.97 6.05 -24.89 -0.15 -2.12 16 5 C 0.17 2.98 3.69 -65.78 -0.24 2.74 16 6 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 7 N -0.74 -16.31 5.07 -51.35 -0.26 -16.57 16 8 C -0.25 -6.70 10.47 -15.06 -0.16 -6.85 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 11 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 12 Si 0.88 22.02 27.73 -169.99 -4.71 17.31 16 13 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 16 C 0.07 1.06 6.38 -2.52 -0.02 1.05 16 17 N -0.60 -9.70 3.06 -163.00 -0.50 -10.20 16 18 C 0.53 9.01 7.35 -10.99 -0.08 8.92 16 19 O -0.54 -10.24 12.56 5.55 0.07 -10.17 16 20 C 0.03 0.47 4.52 -4.98 -0.02 0.45 16 21 N -0.50 -7.24 5.26 -231.89 -1.22 -8.46 16 22 C 0.03 0.43 5.30 -1.90 -0.01 0.42 16 23 C -0.13 -1.34 7.06 -24.88 -0.18 -1.52 16 24 C -0.13 -1.26 6.93 -25.38 -0.18 -1.44 16 25 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16 26 H 0.07 0.97 6.89 -51.93 -0.36 0.62 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 31 H 0.36 8.26 5.68 -40.82 -0.23 8.02 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.08 1.43 7.48 -51.93 -0.39 1.05 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.11 1.67 7.85 -51.93 -0.41 1.26 16 36 H 0.06 0.77 7.81 -51.93 -0.41 0.37 16 37 H 0.11 1.76 5.97 -51.93 -0.31 1.45 16 38 H 0.03 0.44 8.02 -51.93 -0.42 0.02 16 39 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.04 0.47 7.57 -51.93 -0.39 0.08 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -31.28 341.94 -9.29 -40.58 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.56 Total: 7.51 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.04 Total: 2.42 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -1.20 Total: -62.80 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.28 -9.29 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989801077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.521 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds