Wall clock time and date at job start Tue Mar 31 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34779 * 119.99672 * 2 1 4 4 O 1.21285 * 119.99790 * 185.24888 * 3 2 1 5 5 C 1.50703 * 120.00164 * 5.25097 * 3 2 1 6 6 H 1.08994 * 109.87625 * 6.98098 * 5 3 2 7 7 C 1.54317 * 109.88955 * 245.95117 * 5 3 2 8 8 C 1.55388 * 102.90006 * 218.40744 * 7 5 3 9 9 C 1.54910 * 101.74571 * 35.48072 * 8 7 5 10 10 N 1.47435 * 109.88842 * 128.01395 * 5 3 2 11 11 C 1.46900 * 111.00262 * 356.14718 * 10 5 3 12 12 C 1.46500 * 120.00279 * 180.02562 * 2 1 3 13 13 C 1.53772 * 113.61767 * 60.00004 * 12 2 1 14 14 C 1.53777 * 87.17257 * 220.06431 * 13 12 2 15 15 N 1.46505 * 113.61064 * 270.75335 * 14 13 12 16 16 C 1.36944 * 120.00178 * 204.99878 * 15 14 13 17 17 H 1.08002 * 119.99606 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00106 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99590 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47150 * 59.99981 * 20 18 16 22 22 H 1.48503 * 109.46890 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47195 * 299.99766 * 20 18 16 24 24 C 1.53776 * 87.08212 * 25.38680 * 14 13 12 25 25 H 1.08999 * 109.47234 * 274.68811 * 1 2 3 26 26 H 1.08997 * 109.47478 * 34.68833 * 1 2 3 27 27 H 1.09000 * 109.46983 * 154.68933 * 1 2 3 28 28 H 1.09005 * 110.70422 * 336.69083 * 7 5 3 29 29 H 1.09000 * 110.70856 * 99.92354 * 7 5 3 30 30 H 1.08998 * 110.87092 * 277.38879 * 8 7 5 31 31 H 1.09000 * 111.06108 * 153.65022 * 8 7 5 32 32 H 1.08995 * 110.37490 * 204.19267 * 9 8 7 33 33 H 1.09003 * 110.37319 * 81.84779 * 9 8 7 34 34 H 1.09004 * 109.47150 * 69.66169 * 11 10 5 35 35 H 1.09004 * 109.47499 * 189.66146 * 11 10 5 36 36 H 1.08996 * 109.47325 * 309.66102 * 11 10 5 37 37 H 1.09003 * 112.90537 * 191.25173 * 12 2 1 38 38 H 1.08993 * 113.61670 * 105.46722 * 13 12 2 39 39 H 1.09006 * 113.61089 * 334.64766 * 13 12 2 40 40 H 1.09004 * 113.61976 * 139.94119 * 14 13 12 41 41 H 0.96995 * 119.99952 * 25.00359 * 15 14 13 42 42 H 0.97006 * 119.99794 * 180.02562 * 19 18 16 43 43 H 1.09007 * 113.61241 * 89.12300 * 24 14 13 44 44 H 1.09000 * 113.61581 * 219.93262 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3478 1.1695 -0.0961 5 6 1.3900 2.4696 0.1194 6 1 0.3365 2.2744 0.3194 7 6 1.5351 3.2803 -1.1856 8 6 1.6732 4.7408 -0.6733 9 6 2.4814 4.5415 0.6332 10 7 1.9652 3.2809 1.2078 11 6 3.0285 2.5466 1.9064 12 6 2.1975 -1.2687 -0.0006 13 6 1.8955 -2.1539 -1.2211 14 6 1.9114 -3.3537 -0.2594 15 7 3.2371 -3.9547 -0.0928 16 6 3.3519 -5.2670 0.2814 17 1 2.4652 -5.8590 0.4534 18 6 4.6080 -5.8362 0.4397 19 7 5.6887 -5.1145 0.2306 20 14 4.7645 -7.6265 0.9495 21 1 4.1047 -8.4891 -0.0633 22 1 6.2012 -7.9893 1.0478 23 1 4.1122 -7.8243 2.2687 24 6 1.5371 -2.3639 0.8564 25 1 -0.3634 0.0840 1.0242 26 1 -0.3634 0.8450 -0.5848 27 1 -0.3633 -0.9290 -0.4394 28 1 2.4295 2.9772 -1.7301 29 1 0.6475 3.1700 -1.8086 30 1 0.6947 5.1733 -0.4649 31 1 2.2258 5.3547 -1.3844 32 1 2.3058 5.3709 1.3183 33 1 3.5447 4.4501 0.4114 34 1 3.8925 2.4459 1.2496 35 1 3.3169 3.0921 2.8050 36 1 2.6652 1.5569 2.1832 37 1 3.2625 -1.1438 0.1954 38 1 2.6998 -2.1729 -1.9564 39 1 0.9189 -1.9646 -1.6668 40 1 1.1358 -4.0907 -0.4676 41 1 4.0335 -3.4231 -0.2476 42 1 6.5664 -5.5125 0.3408 43 1 0.4622 -2.2312 0.9798 44 1 2.0511 -2.5535 1.7988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998555775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:59 Heat of formation + Delta-G solvation = 21.768248 kcal Electronic energy + Delta-G solvation = -22998.252557 eV Core-core repulsion = 19759.247952 eV Total energy + Delta-G solvation = -3239.004606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87485 -38.93477 -37.17236 -34.89492 -33.00832 -32.19899 -30.11998 -29.29284 -27.09020 -25.72512 -25.11808 -24.56650 -23.21486 -21.55599 -21.42606 -19.01255 -18.26965 -17.74882 -17.19683 -16.28239 -15.93369 -15.46092 -15.05951 -14.85854 -14.30411 -13.98969 -13.77645 -13.60661 -13.15742 -12.92988 -12.72733 -12.46461 -12.31141 -12.11421 -11.92024 -11.89224 -11.59621 -11.48871 -11.34019 -11.26427 -11.00423 -10.85975 -10.76014 -10.24934 -10.19857 -9.94387 -9.69073 -9.61030 -8.91675 -8.52936 -8.23243 -7.01911 -5.79573 -3.10054 2.55091 3.08975 3.42825 3.47015 3.48487 3.89249 4.27093 4.42662 4.53954 4.55579 4.85394 5.03103 5.08796 5.13960 5.16229 5.22252 5.37920 5.39310 5.42494 5.49507 5.51728 5.53636 5.61398 5.63980 5.66660 5.84325 5.86377 5.93410 5.98947 6.06486 6.08689 6.23640 6.41329 6.55792 6.69064 6.70131 6.77838 6.80526 7.01647 7.53032 7.67891 8.23998 8.38437 9.49042 10.05566 10.39640 11.42431 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033068 B = 0.003548 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.533289 B = 7888.819771 C = 8253.368125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.500 3.500 4 O -0.536 6.536 5 C 0.048 3.952 6 H 0.104 0.896 7 C -0.129 4.129 8 C -0.126 4.126 9 C 0.038 3.962 10 N -0.510 5.510 11 C 0.004 3.996 12 C 0.124 3.876 13 C -0.167 4.167 14 C 0.172 3.828 15 N -0.705 5.705 16 C -0.247 4.247 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.181 4.181 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.843 18.660 -1.374 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.332 5.332 3 C 0.287 3.713 4 O -0.413 6.413 5 C -0.063 4.063 6 H 0.122 0.878 7 C -0.168 4.168 8 C -0.164 4.164 9 C -0.090 4.090 10 N -0.234 5.234 11 C -0.143 4.143 12 C 0.021 3.979 13 C -0.208 4.208 14 C 0.059 3.941 15 N -0.344 5.344 16 C -0.378 4.378 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.223 4.223 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.546 18.540 -0.996 22.409 hybrid contribution 0.919 -1.022 -0.201 1.389 sum -11.628 17.519 -1.197 21.060 Atomic orbital electron populations 1.21762 0.80090 1.03070 1.01766 1.48043 1.06747 1.06202 1.72163 1.21017 0.88171 0.85656 0.76436 1.90683 1.14255 1.87108 1.49273 1.22752 1.00254 0.90832 0.92503 0.87821 1.22786 1.03244 0.94851 0.95906 1.22730 1.00928 0.96098 0.96635 1.23157 0.97925 0.92517 0.95412 1.64068 1.32267 1.04064 1.23041 1.22951 0.94637 0.97998 0.98754 1.22769 0.97608 0.79727 0.97753 1.23945 1.01388 0.97788 0.97656 1.20905 0.89912 0.91270 0.92006 1.42204 1.00990 1.10367 1.80808 1.19229 0.92354 0.87200 1.39034 0.90974 1.24786 0.95385 0.98317 1.02206 1.69663 0.97118 1.35754 1.55202 0.86239 0.76641 0.84679 0.78427 1.21180 1.21655 1.21175 1.24337 0.99396 0.97637 1.00961 0.92460 0.91514 0.90219 0.90411 0.90162 0.90458 0.90478 0.89892 0.92956 0.91555 0.91881 0.91805 0.86657 0.91181 0.90517 0.91419 0.77957 0.93298 0.90973 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 8.37 59.84 0.50 1.25 16 2 N -0.60 -8.44 3.08 -172.91 -0.53 -8.97 16 3 C 0.50 7.47 4.77 -10.98 -0.05 7.42 16 4 O -0.54 -10.04 13.27 5.55 0.07 -9.96 16 5 C 0.05 0.55 3.29 -67.88 -0.22 0.33 16 6 H 0.10 1.02 5.90 -51.93 -0.31 0.71 16 7 C -0.13 -1.26 6.48 -24.77 -0.16 -1.42 16 8 C -0.13 -1.03 7.08 -24.46 -0.17 -1.20 16 9 C 0.04 0.37 6.73 -2.29 -0.02 0.36 16 10 N -0.51 -6.16 5.44 -232.95 -1.27 -7.43 16 11 C 0.00 0.06 8.18 60.06 0.49 0.55 16 12 C 0.12 2.12 4.08 -67.03 -0.27 1.84 16 13 C -0.17 -2.82 7.34 -25.93 -0.19 -3.01 16 14 C 0.17 3.38 4.56 -67.12 -0.31 3.08 16 15 N -0.71 -17.80 5.31 -52.64 -0.28 -18.08 16 16 C -0.25 -6.86 9.97 -15.06 -0.15 -7.01 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 20 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 C -0.18 -3.10 7.29 -25.83 -0.19 -3.29 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.51 6.64 -51.93 -0.34 0.16 16 27 H 0.08 0.74 6.16 -51.93 -0.32 0.42 16 28 H 0.08 0.92 7.71 -51.93 -0.40 0.51 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.57 7.63 -51.93 -0.40 0.17 16 34 H 0.07 1.05 5.80 -51.93 -0.30 0.75 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.97 6.95 -51.93 -0.36 0.61 16 37 H 0.12 2.39 7.28 -51.93 -0.38 2.01 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.08 6.99 -51.93 -0.36 0.71 16 40 H 0.07 1.30 8.10 -51.93 -0.42 0.87 16 41 H 0.39 10.52 7.90 -40.82 -0.32 10.19 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.07 1.02 6.61 -51.92 -0.34 0.68 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -32.09 339.63 -9.21 -41.30 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.19 Total: 9.81 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.84 Total: -1.50 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -1.36 Total: -62.11 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.09 -9.21 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998555775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.064 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds