Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 120.00119 * 2 1 4 4 O 1.21283 * 119.99849 * 185.16680 * 3 2 1 5 5 C 1.50691 * 119.99977 * 5.16283 * 3 2 1 6 6 H 1.09004 * 110.29014 * 33.96307 * 5 3 2 7 7 C 1.54263 * 110.32333 * 156.08573 * 5 3 2 8 8 C 1.54378 * 105.06222 * 118.89682 * 7 5 3 9 9 N 1.48560 * 104.59300 * 23.85231 * 8 7 5 10 10 C 1.46901 * 111.00169 * 200.96135 * 9 8 7 11 11 C 1.48563 * 104.22347 * 320.51754 * 9 8 7 12 12 C 1.46508 * 119.99701 * 180.02562 * 2 1 3 13 13 C 1.53772 * 113.61610 * 39.92113 * 12 2 1 14 14 C 1.53775 * 87.08255 * 220.02003 * 13 12 2 15 15 N 1.46504 * 113.69405 * 139.99402 * 14 13 12 16 16 C 1.36929 * 120.00369 * 107.46099 * 15 14 13 17 17 H 1.08001 * 120.00212 * 0.02562 * 16 15 14 18 18 C 1.38819 * 120.00361 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99407 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00126 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46830 * 90.00590 * 20 18 16 22 22 H 1.48498 * 109.47268 * 210.00441 * 20 18 16 23 23 H 1.48497 * 109.47453 * 330.00828 * 20 18 16 24 24 C 1.53780 * 113.61290 * 302.42131 * 12 2 1 25 25 H 1.09001 * 109.47079 * 205.87461 * 1 2 3 26 26 H 1.08995 * 109.47033 * 85.86965 * 1 2 3 27 27 H 1.09004 * 109.46870 * 325.87193 * 1 2 3 28 28 H 1.08996 * 110.32828 * 237.79306 * 7 5 3 29 29 H 1.08999 * 110.32410 * 359.90007 * 7 5 3 30 30 H 1.08999 * 110.41307 * 142.63123 * 8 7 5 31 31 H 1.09000 * 110.41346 * 265.07811 * 8 7 5 32 32 H 1.09004 * 109.47124 * 60.12391 * 10 9 8 33 33 H 1.09004 * 109.47337 * 180.12835 * 10 9 8 34 34 H 1.09002 * 109.47216 * 300.12793 * 10 9 8 35 35 H 1.09003 * 110.41064 * 280.70385 * 11 9 8 36 36 H 1.09000 * 110.41380 * 158.26342 * 11 9 8 37 37 H 1.08999 * 112.84981 * 171.23191 * 12 2 1 38 38 H 1.09007 * 113.61592 * 334.56942 * 13 12 2 39 39 H 1.09000 * 113.61849 * 105.46714 * 13 12 2 40 40 H 1.09000 * 113.61797 * 270.88270 * 14 13 12 41 41 H 0.97005 * 119.99710 * 287.46841 * 15 14 13 42 42 H 0.97002 * 119.99484 * 179.97438 * 19 18 16 43 43 H 1.08998 * 113.62066 * 254.53108 * 24 12 2 44 44 H 1.09006 * 113.61395 * 25.35147 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3480 1.1693 -0.0946 5 6 1.3901 2.4696 0.1174 6 1 0.5138 2.3457 0.7539 7 6 2.3124 3.5688 0.6837 8 6 2.3753 4.6472 -0.4191 9 7 1.1299 4.4518 -1.2052 10 6 1.2570 5.0363 -2.5469 11 6 0.9732 2.9763 -1.2799 12 6 2.1975 -1.2688 -0.0006 13 6 1.5696 -2.3422 -0.9052 14 6 1.9044 -3.3575 0.2001 15 7 0.8552 -4.3561 0.4196 16 6 1.0443 -5.6492 0.0107 17 1 1.9671 -5.9330 -0.4733 18 6 0.0503 -6.5956 0.2192 19 7 -1.0741 -6.2497 0.8095 20 14 0.3081 -8.3593 -0.3393 21 1 0.9351 -9.1393 0.7578 22 1 -1.0021 -8.9638 -0.6904 23 1 1.1962 -8.3770 -1.5293 24 6 1.8512 -2.1805 1.1884 25 1 -0.3633 -0.9247 0.4485 26 1 -0.3633 0.0740 -1.0250 27 1 -0.3633 0.8507 0.5766 28 1 1.8881 3.9857 1.5971 29 1 3.3063 3.1658 0.8784 30 1 2.3931 5.6431 0.0235 31 1 3.2509 4.4950 -1.0502 32 1 2.0808 4.5567 -3.0756 33 1 0.3307 4.8811 -3.1001 34 1 1.4539 6.1049 -2.4605 35 1 1.6295 2.5627 -2.0457 36 1 -0.0646 2.7142 -1.4854 37 1 3.2688 -1.1390 -0.1536 38 1 0.4998 -2.2074 -1.0649 39 1 2.1192 -2.5083 -1.8318 40 1 2.8957 -3.7999 0.1010 41 1 0.0265 -4.1013 0.8546 42 1 -1.7688 -6.9109 0.9549 43 1 2.6280 -2.2162 1.9522 44 1 0.8589 -2.0006 1.6022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999832602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = 10.610651 kcal Electronic energy + Delta-G solvation = -22470.835421 eV Core-core repulsion = 19231.346986 eV Total energy + Delta-G solvation = -3239.488435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60200 -38.92013 -37.56386 -34.82351 -33.21916 -32.35913 -30.07410 -29.21326 -26.99550 -26.25687 -25.15580 -24.56783 -23.06919 -21.53383 -21.12280 -19.12726 -18.72364 -17.58286 -17.11757 -16.43296 -16.03112 -15.50107 -15.09272 -14.55901 -14.50073 -14.33264 -13.87432 -13.48752 -13.26241 -13.04858 -12.97758 -12.70975 -12.27869 -12.11326 -11.88029 -11.84430 -11.74637 -11.51028 -11.47757 -11.25019 -10.96172 -10.88924 -10.58244 -10.47448 -10.28259 -10.01251 -9.75065 -9.53274 -8.92376 -8.85297 -8.44753 -7.01555 -5.82775 -3.11618 2.57044 3.02184 3.40716 3.46376 3.47651 3.74607 4.32436 4.37109 4.52607 4.56124 4.83398 4.99044 5.02879 5.08420 5.12761 5.17949 5.22375 5.25048 5.35457 5.38706 5.42209 5.50577 5.54697 5.57137 5.65583 5.77690 5.83603 5.84669 5.86540 5.95278 6.13176 6.26367 6.31251 6.41385 6.46752 6.54291 6.63188 6.78286 7.01262 7.50831 7.66421 8.19496 8.35745 9.47157 10.03543 10.38312 11.39620 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041717 B = 0.003015 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.022591 B = 9286.180598 C = 9459.426728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.596 5.596 3 C 0.518 3.482 4 O -0.546 6.546 5 C -0.116 4.116 6 H 0.103 0.897 7 C -0.113 4.113 8 C 0.033 3.967 9 N -0.515 5.515 10 C 0.012 3.988 11 C 0.048 3.952 12 C 0.115 3.885 13 C -0.174 4.174 14 C 0.170 3.830 15 N -0.710 5.710 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.163 4.163 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 21.739 -2.634 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.327 5.327 3 C 0.305 3.695 4 O -0.423 6.423 5 C -0.138 4.138 6 H 0.121 0.879 7 C -0.152 4.152 8 C -0.095 4.095 9 N -0.239 5.239 10 C -0.137 4.137 11 C -0.080 4.080 12 C 0.011 3.989 13 C -0.216 4.216 14 C 0.057 3.943 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.203 4.203 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.244 21.785 -2.513 22.168 hybrid contribution 0.278 -1.288 -0.633 1.462 sum 3.522 20.497 -3.146 21.034 Atomic orbital electron populations 1.21860 0.79522 1.03751 1.01952 1.47873 1.06999 1.05874 1.71921 1.20460 0.87827 0.85236 0.75952 1.90652 1.14313 1.87168 1.50217 1.22098 0.99908 0.93047 0.98721 0.87862 1.22303 1.00780 0.93970 0.98099 1.23142 0.91220 0.99753 0.95410 1.65416 1.34033 1.10052 1.14357 1.22521 1.01173 1.00214 0.89748 1.22994 1.01887 0.88269 0.94861 1.22625 0.97279 0.80349 0.98620 1.24313 1.01108 0.96839 0.99358 1.21337 0.93762 0.87238 0.91986 1.42351 1.16367 1.05839 1.70195 1.19311 1.00756 0.85712 1.31751 0.91012 1.24766 0.96448 0.98332 1.01311 1.69659 1.06732 1.33721 1.47968 0.86177 0.76820 0.84879 0.78244 1.21656 1.21750 1.20703 1.23932 1.01808 0.97168 0.97373 0.89802 0.92433 0.91162 0.90544 0.89273 0.89882 0.93439 0.95170 0.91082 0.91125 0.93219 0.89260 0.86885 0.89892 0.92229 0.90292 0.78113 0.93438 0.91772 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 8.93 59.85 0.53 1.32 16 2 N -0.60 -8.04 3.09 -173.01 -0.53 -8.58 16 3 C 0.52 7.16 6.69 -10.99 -0.07 7.08 16 4 O -0.55 -9.37 15.05 5.55 0.08 -9.29 16 5 C -0.12 -1.22 2.69 -90.39 -0.24 -1.46 16 6 H 0.10 0.93 6.23 -51.93 -0.32 0.61 16 7 C -0.11 -1.13 6.52 -25.35 -0.17 -1.30 16 8 C 0.03 0.30 6.49 -2.18 -0.01 0.29 16 9 N -0.51 -4.90 5.66 -238.22 -1.35 -6.25 16 10 C 0.01 0.10 9.53 60.07 0.57 0.67 16 11 C 0.05 0.48 6.03 -2.18 -0.01 0.46 16 12 C 0.11 1.77 4.23 -67.12 -0.28 1.48 16 13 C -0.17 -2.95 7.31 -25.93 -0.19 -3.14 16 14 C 0.17 3.29 4.48 -67.12 -0.30 2.99 16 15 N -0.71 -17.30 5.40 -52.64 -0.28 -17.58 16 16 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 20 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C -0.16 -2.67 7.34 -25.92 -0.19 -2.86 16 25 H 0.08 1.01 6.16 -51.93 -0.32 0.69 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.60 5.97 -51.93 -0.31 0.29 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.05 6.75 -51.93 -0.35 0.70 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.47 7.97 -51.93 -0.41 0.05 16 32 H 0.03 0.25 7.97 -51.93 -0.41 -0.17 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.56 7.61 -51.93 -0.40 0.16 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.85 7.19 -51.93 -0.37 1.48 16 38 H 0.08 1.44 6.77 -51.93 -0.35 1.09 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 41 H 0.38 9.86 7.93 -40.82 -0.32 9.54 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.34 6.79 -51.93 -0.35 0.99 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -31.29 345.57 -9.06 -40.36 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.28 Total: 7.67 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.61 Total: -1.73 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -1.44 Total: -59.28 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.29 -9.06 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999832602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.967 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds