Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 120.00473 * 2 1 4 4 O 1.21282 * 119.99844 * 3.56218 * 3 2 1 5 5 C 1.50697 * 120.00192 * 183.56453 * 3 2 1 6 6 H 1.09001 * 110.28616 * 313.59240 * 5 3 2 7 7 C 1.54259 * 110.32584 * 191.46523 * 5 3 2 8 8 C 1.54381 * 105.05784 * 241.10181 * 7 5 3 9 9 N 1.48562 * 104.59797 * 336.14666 * 8 7 5 10 10 C 1.46891 * 111.00193 * 159.03677 * 9 8 7 11 11 C 1.48566 * 104.22093 * 39.48155 * 9 8 7 12 12 C 1.46502 * 119.99361 * 180.02562 * 2 1 3 13 13 C 1.53786 * 113.61603 * 32.27028 * 12 2 1 14 14 C 1.53959 * 87.01424 * 220.04318 * 13 12 2 15 15 N 1.46499 * 113.66165 * 139.93364 * 14 13 12 16 16 C 1.36941 * 120.00505 * 107.44189 * 15 14 13 17 17 H 1.08003 * 119.99709 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00443 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00221 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47057 * 89.99697 * 20 18 16 22 22 H 1.48491 * 109.47221 * 209.99444 * 20 18 16 23 23 H 1.48496 * 109.46974 * 329.99927 * 20 18 16 24 24 C 1.53774 * 87.11216 * 25.36265 * 14 13 12 25 25 H 1.08995 * 109.47266 * 92.60765 * 1 2 3 26 26 H 1.09000 * 109.47459 * 212.61529 * 1 2 3 27 27 H 1.09001 * 109.46830 * 332.61198 * 1 2 3 28 28 H 1.08993 * 110.32750 * 122.20312 * 7 5 3 29 29 H 1.09003 * 110.32136 * 359.97438 * 7 5 3 30 30 H 1.09009 * 110.41092 * 94.92199 * 8 7 5 31 31 H 1.08991 * 110.41174 * 217.36569 * 8 7 5 32 32 H 1.09007 * 109.47121 * 59.87386 * 10 9 8 33 33 H 1.09000 * 109.47443 * 179.87004 * 10 9 8 34 34 H 1.09001 * 109.47703 * 299.87775 * 10 9 8 35 35 H 1.08997 * 110.41045 * 201.74180 * 11 9 8 36 36 H 1.09000 * 110.51268 * 79.34812 * 11 9 8 37 37 H 1.09002 * 112.84832 * 163.46417 * 12 2 1 38 38 H 1.08989 * 113.61176 * 334.55961 * 13 12 2 39 39 H 1.08999 * 113.61626 * 105.47074 * 13 12 2 40 40 H 1.08999 * 113.54017 * 270.80361 * 14 13 12 41 41 H 0.97005 * 120.00172 * 287.43714 * 15 14 13 42 42 H 0.96995 * 120.00446 * 180.02562 * 19 18 16 43 43 H 1.09010 * 113.61070 * 220.08720 * 24 14 13 44 44 H 1.09002 * 113.61590 * 89.18679 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5344 2.2165 0.0653 5 6 3.6438 1.1683 -0.0811 6 1 4.0604 0.4410 0.6157 7 6 4.1956 2.5768 0.2211 8 6 4.9421 2.9990 -1.0626 9 7 5.2965 1.7188 -1.7279 10 6 5.5571 1.9237 -3.1589 11 6 4.1033 0.8579 -1.5219 12 6 2.1974 -1.2688 -0.0006 13 6 1.4735 -2.3977 -0.7534 14 6 1.9383 -3.3380 0.3736 15 7 0.9246 -4.3145 0.7801 16 6 1.0690 -5.6332 0.4404 17 1 1.9300 -5.9534 -0.1276 18 6 0.1083 -6.5583 0.8251 19 7 -0.9413 -6.1681 1.5169 20 14 0.3049 -8.3570 0.3611 21 1 1.0562 -9.0644 1.4290 22 1 -1.0351 -8.9772 0.2047 23 1 1.0502 -8.4593 -0.9193 24 6 1.9963 -2.0968 1.2795 25 1 -0.3633 -0.0468 -1.0265 26 1 -0.3634 -0.8656 0.5539 27 1 -0.3633 0.9125 0.4728 28 1 4.8843 2.5406 1.0650 29 1 3.3779 3.2674 0.4276 30 1 4.2903 3.5928 -1.7036 31 1 5.8428 3.5591 -0.8117 32 1 6.3836 2.6237 -3.2812 33 1 5.8164 0.9712 -3.6211 34 1 4.6647 2.3283 -3.6365 35 1 4.3726 -0.1940 -1.6168 36 1 3.3195 1.1147 -2.2345 37 1 3.2430 -1.1539 -0.2864 38 1 0.3920 -2.2697 -0.7971 39 1 1.9132 -2.6272 -1.7240 40 1 2.9128 -3.7901 0.1892 41 1 0.1511 -4.0269 1.2900 42 1 -1.6125 -6.8145 1.7860 43 1 2.8574 -2.0839 1.9478 44 1 1.0579 -1.8865 1.7926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999832616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = 9.654174 kcal Electronic energy + Delta-G solvation = -22742.440827 eV Core-core repulsion = 19502.910916 eV Total energy + Delta-G solvation = -3239.529911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65377 -38.81212 -37.80521 -34.62159 -32.92729 -32.54686 -29.96969 -29.64253 -27.17880 -25.83275 -25.23638 -24.55004 -22.75066 -21.61740 -21.40214 -19.35300 -18.56953 -17.63160 -17.12886 -16.33478 -15.71891 -15.41806 -15.30148 -14.66590 -14.54176 -14.40686 -13.96909 -13.51493 -13.26706 -12.99195 -12.78602 -12.73616 -12.20489 -12.03360 -11.86135 -11.83541 -11.70269 -11.46177 -11.39267 -11.30918 -10.95748 -10.90398 -10.64858 -10.49129 -10.34621 -10.08375 -9.82945 -9.55690 -8.95232 -8.81128 -8.47693 -7.04674 -5.84778 -3.14343 2.57594 3.03221 3.39160 3.44711 3.46231 3.78099 4.36233 4.39401 4.50271 4.56746 4.90370 4.93826 5.01828 5.04994 5.08961 5.14615 5.17513 5.29000 5.39008 5.41655 5.52108 5.58102 5.62515 5.65942 5.70875 5.77796 5.86631 5.89241 5.92653 5.95444 6.00518 6.22253 6.23796 6.34633 6.46403 6.50320 6.67326 6.73974 6.91620 7.50236 7.63612 8.18089 8.33333 9.44815 10.00985 10.35092 11.37435 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.003518 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.219414 B = 7956.153096 C = 8556.427067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.595 5.595 3 C 0.518 3.482 4 O -0.549 6.549 5 C -0.114 4.114 6 H 0.105 0.895 7 C -0.116 4.116 8 C 0.032 3.968 9 N -0.514 5.514 10 C 0.012 3.988 11 C 0.046 3.954 12 C 0.104 3.896 13 C -0.174 4.174 14 C 0.170 3.830 15 N -0.709 5.709 16 C -0.247 4.247 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.164 4.164 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.824 16.389 -5.577 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.325 5.325 3 C 0.306 3.694 4 O -0.427 6.427 5 C -0.136 4.136 6 H 0.124 0.876 7 C -0.154 4.154 8 C -0.096 4.096 9 N -0.238 5.238 10 C -0.137 4.137 11 C -0.082 4.082 12 C 0.000 4.000 13 C -0.216 4.216 14 C 0.057 3.943 15 N -0.347 5.347 16 C -0.378 4.378 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.204 4.204 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.000 16.479 -5.387 20.533 hybrid contribution -1.000 -0.680 -0.516 1.315 sum 10.000 15.799 -5.903 19.607 Atomic orbital electron populations 1.21619 0.79222 1.03312 1.01810 1.47849 1.07001 1.05877 1.71795 1.20474 0.89864 0.83362 0.75746 1.90636 1.70146 1.31308 1.50659 1.22034 0.92189 1.00441 0.98962 0.87638 1.22330 1.00308 0.95096 0.97666 1.23154 0.99284 0.91782 0.95357 1.65419 1.34769 1.11144 1.12437 1.22522 1.00617 1.02313 0.88203 1.23064 0.91685 0.99236 0.94236 1.22818 0.96468 0.81310 0.99422 1.24359 1.01159 0.95981 1.00115 1.21379 0.93775 0.87453 0.91704 1.42361 1.23803 1.04140 1.64401 1.19298 1.05394 0.84252 1.28840 0.90966 1.24771 0.97085 0.98267 1.00612 1.69655 1.11993 1.33700 1.42587 0.86184 0.76819 0.85105 0.78037 1.21627 1.21756 1.20670 1.23957 1.02243 0.97520 0.96724 0.92819 0.90459 0.90735 0.90505 0.88954 0.93616 0.89872 0.91133 0.90987 0.95264 0.89021 0.93301 0.87313 0.89614 0.92019 0.90199 0.78053 0.93382 0.91596 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 9.08 59.85 0.54 1.66 16 2 N -0.59 -8.09 3.08 -173.00 -0.53 -8.62 16 3 C 0.52 7.24 6.81 -10.99 -0.07 7.17 16 4 O -0.55 -9.26 14.85 5.56 0.08 -9.18 16 5 C -0.11 -1.28 2.46 -90.39 -0.22 -1.50 16 6 H 0.11 1.09 7.24 -51.93 -0.38 0.71 16 7 C -0.12 -1.21 6.57 -25.35 -0.17 -1.38 16 8 C 0.03 0.31 6.49 -2.18 -0.01 0.29 16 9 N -0.51 -5.16 5.66 -238.23 -1.35 -6.51 16 10 C 0.01 0.10 9.53 60.06 0.57 0.67 16 11 C 0.05 0.48 5.48 -2.18 -0.01 0.47 16 12 C 0.10 1.36 3.78 -67.12 -0.25 1.10 16 13 C -0.17 -2.70 7.28 -25.82 -0.19 -2.89 16 14 C 0.17 3.06 4.48 -67.03 -0.30 2.76 16 15 N -0.71 -16.82 5.40 -52.55 -0.28 -17.11 16 16 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.16 -2.47 7.40 -25.93 -0.19 -2.67 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.06 6.51 -51.93 -0.34 0.72 16 27 H 0.07 1.03 7.30 -51.93 -0.38 0.65 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.11 6.53 -51.93 -0.34 0.77 16 30 H 0.05 0.45 7.97 -51.92 -0.41 0.04 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.24 7.97 -51.93 -0.41 -0.17 16 35 H 0.09 0.89 7.11 -51.93 -0.37 0.52 16 36 H 0.05 0.56 7.62 -51.93 -0.40 0.16 16 37 H 0.11 1.22 4.94 -51.93 -0.26 0.96 16 38 H 0.09 1.44 6.51 -51.94 -0.34 1.11 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 41 H 0.39 9.77 7.92 -40.82 -0.32 9.45 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 44 H 0.08 1.35 7.24 -51.93 -0.38 0.97 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -30.61 343.85 -9.00 -39.60 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.24 Total: 7.98 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.55 Total: -1.43 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -1.44 Total: -58.89 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.61 -9.00 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999832616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.258 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds