Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48528 * 111.00639 * 2 1 4 4 C 1.54932 * 103.23290 * 200.28389 * 3 2 1 5 5 C 1.54599 * 102.92118 * 37.41000 * 4 3 2 6 6 H 1.08994 * 110.38735 * 97.00592 * 5 4 3 7 7 C 1.50695 * 110.30824 * 219.13005 * 5 4 3 8 8 O 1.21274 * 120.00413 * 357.44325 * 7 5 4 9 9 N 1.34784 * 119.99635 * 177.17283 * 7 5 4 10 10 C 1.46923 * 120.63216 * 359.97438 * 9 7 5 11 11 C 1.53190 * 108.77666 * 126.36791 * 10 9 7 12 12 C 1.53044 * 109.31247 * 54.63326 * 11 10 9 13 13 C 1.53035 * 109.53745 * 298.63925 * 12 11 10 14 14 H 1.08998 * 109.49766 * 301.40785 * 13 12 11 15 15 N 1.46511 * 109.49535 * 181.34826 * 13 12 11 16 16 C 1.36933 * 119.99902 * 84.99812 * 15 13 12 17 17 H 1.08001 * 120.00243 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99609 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00360 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00021 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47156 * 59.99740 * 20 18 16 22 22 H 1.48496 * 109.47402 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46825 * 299.99690 * 20 18 16 24 24 C 1.46927 * 120.62699 * 179.71634 * 9 7 5 25 25 C 1.47911 * 110.99731 * 242.60327 * 2 1 3 26 26 H 1.08996 * 109.47782 * 177.39558 * 1 2 3 27 27 H 1.09004 * 109.46771 * 297.39073 * 1 2 3 28 28 H 1.08998 * 109.47441 * 57.38903 * 1 2 3 29 29 H 1.09006 * 110.66350 * 318.71912 * 3 2 1 30 30 H 1.09000 * 110.66474 * 81.67935 * 3 2 1 31 31 H 1.09003 * 110.72080 * 279.05898 * 4 3 2 32 32 H 1.08999 * 110.72689 * 155.77336 * 4 3 2 33 33 H 1.08997 * 109.58570 * 246.16095 * 10 9 7 34 34 H 1.09000 * 109.58284 * 6.44197 * 10 9 7 35 35 H 1.09000 * 109.49890 * 174.58770 * 11 10 9 36 36 H 1.09005 * 109.49991 * 294.68428 * 11 10 9 37 37 H 1.09005 * 109.45662 * 58.65792 * 12 11 10 38 38 H 1.08997 * 109.46192 * 178.60857 * 12 11 10 39 39 H 0.97001 * 119.99241 * 264.99878 * 15 13 12 40 40 H 0.97005 * 120.00268 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.58817 * 353.42412 * 24 9 7 42 42 H 1.09005 * 109.58520 * 113.84651 * 24 9 7 43 43 H 1.09000 * 109.91180 * 26.49394 * 25 2 1 44 44 H 1.08997 * 109.91532 * 265.19627 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4491 1.2105 -0.5228 5 6 3.2982 0.1052 -1.5931 6 1 3.2142 0.5470 -2.5860 7 6 4.4715 -0.8388 -1.5392 8 8 5.3782 -0.6354 -0.7599 9 7 4.5107 -1.9124 -2.3532 10 6 3.4167 -2.1757 -3.2980 11 6 4.0060 -2.3332 -4.7032 12 6 5.0898 -3.4136 -4.6794 13 6 6.2126 -2.9913 -3.7293 14 1 6.6284 -2.0389 -4.0580 15 7 7.2646 -4.0110 -3.7317 16 6 8.2430 -3.9830 -4.6893 17 1 8.2390 -3.2095 -5.4430 18 6 9.2394 -4.9495 -4.6919 19 7 9.2440 -5.8924 -3.7737 20 14 10.5746 -4.9110 -5.9978 21 1 11.3185 -3.6289 -5.9075 22 1 11.5107 -6.0433 -5.7822 23 1 9.9554 -5.0304 -7.3423 24 6 5.6508 -2.8384 -2.3166 25 6 1.9989 -0.6354 -1.2260 26 1 -0.3634 -1.0265 -0.0467 27 1 -0.3633 0.4728 0.9125 28 1 -0.3634 0.5538 -0.8656 29 1 1.4237 2.0204 -0.6729 30 1 2.0015 1.7986 1.0091 31 1 4.1115 0.8834 0.2786 32 1 3.8123 2.1351 -0.9716 33 1 2.9007 -3.0926 -3.0132 34 1 2.7144 -1.3422 -3.2853 35 1 3.2178 -2.6238 -5.3978 36 1 4.4426 -1.3870 -5.0229 37 1 4.6578 -4.3537 -4.3361 38 1 5.4936 -3.5451 -5.6833 39 1 7.2679 -4.7059 -3.0549 40 1 9.9401 -6.5680 -3.7757 41 1 6.4234 -2.4409 -1.6584 42 1 5.3204 -3.8104 -1.9503 43 1 1.2757 -0.5402 -2.0359 44 1 2.2121 -1.6874 -1.0366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000921245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -15.665200 kcal Electronic energy + Delta-G solvation = -22936.811097 eV Core-core repulsion = 19696.183256 eV Total energy + Delta-G solvation = -3240.627842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57332 -38.53491 -37.16019 -34.52852 -32.62725 -32.09742 -31.23204 -29.60226 -28.03212 -26.23194 -25.12104 -23.82973 -22.18393 -21.78637 -21.42073 -19.82335 -18.83181 -17.19839 -17.11694 -16.27596 -16.14834 -15.07673 -14.96799 -14.57272 -14.42973 -14.03781 -13.91375 -13.56581 -13.34888 -13.21001 -12.91661 -12.84803 -12.43274 -12.30646 -12.01219 -11.80573 -11.66887 -11.37028 -11.11974 -10.95290 -10.91327 -10.88280 -10.63135 -10.41378 -10.34307 -10.09860 -9.73020 -9.53128 -8.90650 -8.74603 -8.38593 -6.98794 -5.77265 -3.07012 2.75714 3.10733 3.44104 3.48633 3.49588 3.70781 4.27390 4.32631 4.58696 4.61315 4.82120 4.97785 4.99720 5.05465 5.11896 5.15203 5.23318 5.28552 5.32208 5.51085 5.52752 5.56047 5.59499 5.60652 5.73881 5.76054 5.77105 5.83084 6.03096 6.10991 6.16881 6.25414 6.39051 6.53329 6.55518 6.68936 6.72307 6.88663 7.04713 7.59916 7.68784 8.33699 8.40966 9.51731 10.07110 10.42303 11.45154 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.003528 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.157619 B = 7934.013222 C = 8213.780839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.034 3.966 4 C -0.110 4.110 5 C -0.120 4.120 6 H 0.101 0.899 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.604 5.604 10 C 0.106 3.894 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.168 3.832 14 H 0.049 0.951 15 N -0.721 5.721 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.107 3.893 25 C 0.046 3.954 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 12.703 3.406 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.148 4.148 5 C -0.142 4.142 6 H 0.119 0.881 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.337 5.337 10 C -0.017 4.017 11 C -0.173 4.173 12 C -0.178 4.178 13 C 0.057 3.943 14 H 0.067 0.933 15 N -0.362 5.362 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.016 4.016 25 C -0.082 4.082 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.227 12.527 4.169 23.324 hybrid contribution 0.335 0.036 -1.478 1.516 sum -18.892 12.563 2.691 22.847 Atomic orbital electron populations 1.22527 0.87681 1.02163 1.00931 1.64751 1.08130 1.15241 1.36456 1.23296 0.95062 0.89610 1.01408 1.22476 0.96695 0.97133 0.98487 1.22175 0.93935 0.96476 1.01657 0.88138 1.20282 0.87453 0.81114 0.80151 1.90685 1.38799 1.73475 1.38357 1.48077 1.21868 1.25906 1.37898 1.21845 0.88957 1.01381 0.89514 1.21945 0.99270 1.00694 0.95363 1.22281 0.96156 0.97181 1.02150 1.20395 0.88894 0.93507 0.91483 0.93317 1.42302 1.27571 1.31016 1.35306 1.19157 1.02692 1.09422 1.05837 0.91231 1.24746 0.99243 0.97856 0.98932 1.69651 1.35754 1.16908 1.35674 0.86263 0.81742 0.76981 0.81155 1.21223 1.21661 1.21283 1.21912 0.87951 0.92200 0.99544 1.22969 0.94006 0.99929 0.91340 0.91201 0.91147 0.95366 0.93685 0.89661 0.88530 0.90536 0.91343 0.90365 0.91374 0.91900 0.92456 0.91577 0.78175 0.93390 0.88916 0.91727 0.92791 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.06 0.56 0.68 16 2 N -0.52 -5.17 5.55 -238.72 -1.33 -6.49 16 3 C 0.03 0.30 6.56 -1.90 -0.01 0.29 16 4 C -0.11 -1.16 6.40 -24.87 -0.16 -1.32 16 5 C -0.12 -1.32 2.48 -90.42 -0.22 -1.54 16 6 H 0.10 0.92 7.74 -51.93 -0.40 0.51 16 7 C 0.52 7.97 6.90 -10.98 -0.08 7.90 16 8 O -0.54 -10.37 14.85 5.56 0.08 -10.29 16 9 N -0.60 -8.91 2.94 -173.01 -0.51 -9.42 16 10 C 0.11 1.19 5.28 -3.71 -0.02 1.17 16 11 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 12 C -0.14 -2.32 5.47 -26.69 -0.15 -2.47 16 13 C 0.17 3.36 2.91 -68.01 -0.20 3.16 16 14 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 15 N -0.72 -18.10 5.12 -53.51 -0.27 -18.38 16 16 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.11 1.92 5.88 -3.91 -0.02 1.90 16 25 C 0.05 0.44 4.70 -2.75 -0.01 0.43 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.18 8.00 -51.93 -0.42 -0.23 16 29 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.28 6.91 -51.93 -0.36 0.93 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.68 4.80 -51.93 -0.25 0.43 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 1.91 7.01 -51.93 -0.36 1.54 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.41 7.33 -51.93 -0.38 0.03 16 44 H 0.09 0.94 7.01 -51.93 -0.36 0.57 16 LS Contribution 340.08 15.07 5.13 5.13 Total: -1.00 -32.38 340.08 -9.37 -41.75 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.46 Total: 6.61 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.71 Total: 1.12 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -1.38 Total: -61.77 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.38 -9.37 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000921245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.088 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds