Wall clock time and date at job start Tue Mar 31 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46888 * 1 3 3 C 1.48564 * 111.00071 * 2 1 4 4 C 1.54384 * 104.59647 * 200.96040 * 3 2 1 5 5 C 1.54259 * 105.06023 * 23.85122 * 4 3 2 6 6 H 1.08997 * 110.32616 * 240.99991 * 5 4 3 7 7 C 1.50699 * 110.32336 * 118.89472 * 5 4 3 8 8 O 1.21281 * 120.00127 * 0.02562 * 7 5 4 9 9 N 1.34778 * 119.99892 * 179.97438 * 7 5 4 10 10 C 1.46919 * 120.63255 * 0.02562 * 9 7 5 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 14 14 H 1.08994 * 109.50232 * 301.42239 * 13 12 11 15 15 N 1.46506 * 109.52453 * 181.34035 * 13 12 11 16 16 C 1.36934 * 119.99844 * 85.15186 * 15 13 12 17 17 H 1.08001 * 120.00150 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99779 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99833 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47500 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47303 * 119.99501 * 20 18 16 23 23 H 1.48508 * 109.47215 * 239.99530 * 20 18 16 24 24 C 1.46933 * 120.62741 * 180.02562 * 9 7 5 25 25 C 1.48560 * 111.00210 * 244.58359 * 2 1 3 26 26 H 1.09003 * 109.47495 * 59.87456 * 1 2 3 27 27 H 1.09001 * 109.47241 * 179.87129 * 1 2 3 28 28 H 1.09001 * 109.47349 * 299.87116 * 1 2 3 29 29 H 1.08999 * 110.41386 * 82.17806 * 3 2 1 30 30 H 1.09005 * 110.51155 * 319.79051 * 3 2 1 31 31 H 1.09002 * 110.32121 * 264.95855 * 4 3 2 32 32 H 1.09001 * 110.40566 * 142.79165 * 4 3 2 33 33 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 34 34 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 36 36 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 37 37 H 1.08999 * 109.41979 * 178.67448 * 12 11 10 38 38 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 39 39 H 0.97001 * 119.99765 * 265.14265 * 15 13 12 40 40 H 0.97004 * 119.99951 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 42 42 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 43 43 H 1.09000 * 110.41436 * 40.25712 * 25 2 1 44 44 H 1.09002 * 110.41064 * 277.82092 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4432 -0.0538 -1.3585 6 1 4.1496 -0.7685 -0.9363 7 6 3.7894 0.2356 -2.7964 8 8 4.0185 1.3736 -3.1477 9 7 3.8454 -0.7703 -3.6916 10 6 3.5710 -2.1540 -3.2811 11 6 2.4830 -2.7346 -4.1900 12 6 2.9167 -2.5841 -5.6531 13 6 3.0887 -1.1008 -5.9879 14 1 2.1495 -0.5767 -5.8116 15 7 3.4720 -0.9576 -7.3947 16 6 2.5083 -0.9267 -8.3670 17 1 1.4658 -1.0083 -8.0970 18 6 2.8715 -0.7916 -9.7000 19 7 4.1419 -0.6927 -10.0292 20 14 1.5570 -0.7501 -11.0265 21 1 0.2168 -0.8791 -10.3997 22 1 1.6375 0.5369 -11.7631 23 1 1.7715 -1.8755 -11.9714 24 6 4.1820 -0.5038 -5.0968 25 6 2.0013 -0.5953 -1.2527 26 1 -0.3634 0.5158 -0.8889 27 1 -0.3634 -1.0277 -0.0023 28 1 -0.3634 0.5118 0.8911 29 1 2.0078 1.7917 1.0120 30 1 1.4103 2.0230 -0.6591 31 1 4.1482 1.1748 0.2935 32 1 3.6953 2.0994 -1.1696 33 1 4.4795 -2.7493 -3.3725 34 1 3.2282 -2.1670 -2.2465 35 1 2.3385 -3.7894 -3.9564 36 1 1.5495 -2.1949 -4.0303 37 1 2.1562 -3.0172 -6.3029 38 1 3.8630 -3.1030 -5.8058 39 1 4.4083 -0.8846 -7.6372 40 1 4.3957 -0.5979 -10.9606 41 1 4.2401 0.5722 -5.2609 42 1 5.1418 -0.9622 -5.3358 43 1 1.4098 -0.2713 -2.1089 44 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000921256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:54 Heat of formation + Delta-G solvation = -14.783336 kcal Electronic energy + Delta-G solvation = -23123.669947 eV Core-core repulsion = 19883.080346 eV Total energy + Delta-G solvation = -3240.589601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60145 -38.47817 -37.18878 -34.55256 -32.61027 -32.10162 -31.25311 -29.55724 -28.03943 -26.24372 -25.11857 -23.86219 -22.09659 -21.78140 -21.47849 -19.87989 -18.60550 -17.55683 -17.20424 -16.26576 -15.68552 -15.31091 -14.80571 -14.67304 -14.37066 -14.10681 -14.02409 -13.59341 -13.36623 -13.14020 -13.08186 -12.85129 -12.60193 -12.23550 -11.85444 -11.70045 -11.52511 -11.33409 -11.04511 -11.01548 -10.93540 -10.83596 -10.63396 -10.43367 -10.35335 -10.06684 -9.77712 -9.60740 -8.93966 -8.80678 -8.41966 -7.01053 -5.79856 -3.09533 2.68686 3.06580 3.41567 3.47297 3.49398 3.79030 4.34314 4.40785 4.55513 4.57635 4.85435 4.97348 5.06035 5.10940 5.14100 5.19970 5.27769 5.28676 5.43035 5.50494 5.54485 5.56629 5.61033 5.67858 5.73710 5.76989 5.79637 5.90435 5.97631 6.02533 6.13734 6.22800 6.36314 6.50193 6.52658 6.67058 6.70153 6.85716 7.02127 7.56134 7.67548 8.28092 8.38229 9.49392 10.04552 10.39680 11.42708 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.003890 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.680063 B = 7196.347372 C = 7305.634262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.515 5.515 3 C 0.031 3.969 4 C -0.117 4.117 5 C -0.113 4.113 6 H 0.105 0.895 7 C 0.517 3.483 8 O -0.540 6.540 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.169 3.831 14 H 0.048 0.952 15 N -0.721 5.721 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.105 3.895 25 C 0.041 3.959 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 -2.512 21.687 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.239 5.239 3 C -0.097 4.097 4 C -0.155 4.155 5 C -0.135 4.135 6 H 0.123 0.877 7 C 0.304 3.696 8 O -0.417 6.417 9 N -0.335 5.335 10 C -0.023 4.023 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.066 0.934 15 N -0.362 5.362 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.017 4.017 25 C -0.087 4.087 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.284 -2.185 21.845 22.198 hybrid contribution -0.712 0.243 -1.684 1.844 sum -3.996 -1.942 20.161 20.645 Atomic orbital electron populations 1.22523 0.87781 1.02374 1.01051 1.65437 1.08427 1.15711 1.34320 1.23165 0.95394 0.89935 1.01209 1.22339 0.96459 0.97443 0.99265 1.22022 0.98377 1.00069 0.92982 0.87735 1.20443 0.76923 0.84790 0.87448 1.90672 1.49955 1.21144 1.79935 1.48074 1.68608 1.07170 1.09635 1.21948 0.99195 0.82123 0.99044 1.21987 0.98047 1.00374 0.96776 1.22334 1.01530 1.00404 0.93496 1.20450 0.95538 0.92762 0.85425 0.93362 1.42319 1.07034 1.87634 0.99248 1.19245 0.88795 1.42375 0.86605 0.91138 1.24745 0.96125 1.02726 0.97181 1.69670 1.14383 1.56887 1.16985 0.86123 0.80730 0.77237 0.82122 1.20570 1.21802 1.21827 1.22006 0.98464 1.02837 0.78429 1.23234 0.93290 1.00345 0.91832 0.95083 0.91075 0.91159 0.89890 0.93496 0.90583 0.88637 0.91334 0.89732 0.91234 0.91992 0.91583 0.92431 0.78180 0.93486 0.88989 0.91664 0.92924 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.53 60.06 0.57 0.67 16 2 N -0.52 -5.08 5.66 -238.23 -1.35 -6.43 16 3 C 0.03 0.30 6.49 -2.18 -0.01 0.29 16 4 C -0.12 -1.25 6.59 -25.35 -0.17 -1.42 16 5 C -0.11 -1.24 2.52 -90.39 -0.23 -1.47 16 6 H 0.10 0.97 7.86 -51.93 -0.41 0.56 16 7 C 0.52 7.72 6.94 -10.99 -0.08 7.65 16 8 O -0.54 -10.17 14.67 5.56 0.08 -10.09 16 9 N -0.60 -8.75 2.97 -172.79 -0.51 -9.27 16 10 C 0.10 1.11 5.96 -3.71 -0.02 1.09 16 11 C -0.13 -1.63 6.11 -26.45 -0.16 -1.79 16 12 C -0.14 -2.30 5.47 -26.53 -0.15 -2.44 16 13 C 0.17 3.35 2.92 -67.83 -0.20 3.16 16 14 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 15 N -0.72 -17.99 5.12 -53.33 -0.27 -18.27 16 16 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C 0.11 1.88 5.90 -3.73 -0.02 1.85 16 25 C 0.04 0.42 4.91 -2.18 -0.01 0.41 16 26 H 0.03 0.28 7.98 -51.93 -0.41 -0.14 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.50 7.97 -51.93 -0.41 0.08 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.23 6.46 -51.93 -0.34 0.89 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.74 3.94 -51.93 -0.20 0.53 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.09 1.86 7.00 -51.93 -0.36 1.50 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.62 7.62 -51.93 -0.40 0.23 16 44 H 0.09 0.79 6.51 -51.93 -0.34 0.45 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -31.84 339.92 -9.33 -41.17 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.39 Total: 6.93 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.72 Total: 0.80 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -1.41 Total: -61.29 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.84 -9.33 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000921256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.389 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds