Wall clock time and date at job start Tue Mar 31 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99725 * 2 1 4 4 H 1.48502 * 109.47137 * 269.99600 * 3 2 1 5 5 H 1.48499 * 109.47227 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46989 * 149.99799 * 3 2 1 7 7 C 1.38807 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99603 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00281 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.49442 * 325.06325 * 10 9 7 12 12 C 1.53041 * 109.49651 * 205.00307 * 10 9 7 13 13 C 1.53045 * 109.53392 * 178.68130 * 12 10 9 14 14 C 1.53189 * 109.31206 * 61.36377 * 13 12 10 15 15 N 1.46929 * 108.77826 * 305.36137 * 14 13 12 16 16 C 1.34775 * 120.63327 * 233.58523 * 15 14 13 17 17 O 1.21276 * 119.99950 * 179.97438 * 16 15 14 18 18 C 1.50695 * 119.99755 * 0.02562 * 16 15 14 19 19 N 1.46904 * 109.46864 * 179.97438 * 18 16 15 20 20 C 1.48566 * 110.99843 * 169.99938 * 19 18 16 21 21 C 1.54380 * 104.59262 * 200.95774 * 20 19 18 22 22 C 1.54264 * 105.06204 * 23.85280 * 21 20 19 23 23 C 1.48556 * 111.00162 * 54.57693 * 19 18 16 24 24 C 1.46931 * 118.73600 * 53.85951 * 15 14 13 25 25 H 0.96999 * 119.99940 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99820 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46381 * 58.66302 * 12 10 9 28 28 H 1.08996 * 109.44803 * 298.69224 * 12 10 9 29 29 H 1.09002 * 109.50075 * 301.41302 * 13 12 10 30 30 H 1.09001 * 109.52297 * 181.32564 * 13 12 10 31 31 H 1.08998 * 109.58975 * 185.57498 * 14 13 12 32 32 H 1.09004 * 109.58772 * 65.15292 * 14 13 12 33 33 H 1.09001 * 109.47736 * 59.99408 * 18 16 15 34 34 H 1.08998 * 109.47027 * 299.99144 * 18 16 15 35 35 H 1.08999 * 110.41049 * 319.73313 * 20 19 18 36 36 H 1.08999 * 110.41330 * 82.18261 * 20 19 18 37 37 H 1.09005 * 110.32530 * 142.74561 * 21 20 19 38 38 H 1.08995 * 110.32857 * 264.95872 * 21 20 19 39 39 H 1.08995 * 110.32483 * 241.10627 * 22 21 20 40 40 H 1.09000 * 110.32872 * 118.89474 * 22 21 20 41 41 H 1.08997 * 110.41166 * 277.81957 * 23 19 18 42 42 H 1.09000 * 110.40826 * 40.26311 * 23 19 18 43 43 H 1.09000 * 109.58407 * 65.92626 * 24 15 14 44 44 H 1.08990 * 109.58691 * 186.35451 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9695 -3.5506 -0.5879 12 6 1.1811 -4.7528 -0.6092 13 6 1.9574 -6.0714 -0.6398 14 6 2.3174 -6.4807 0.7919 15 7 3.0365 -5.3720 1.4341 16 6 4.2391 -5.5742 2.0078 17 8 4.8228 -4.6507 2.5343 18 6 4.8590 -6.9477 1.9941 19 7 6.1589 -6.9051 2.6772 20 6 6.6905 -8.2750 2.8960 21 6 7.7124 -8.1171 4.0423 22 6 7.2734 -6.8464 4.7986 23 6 6.0230 -6.3433 4.0457 24 6 2.4167 -4.0398 1.4443 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3880 -0.0002 27 1 0.9024 -4.4719 -1.6249 28 1 0.2814 -4.8750 -0.0063 29 1 2.8701 -5.9430 -1.2218 30 1 1.3412 -6.8464 -1.0956 31 1 2.9541 -7.3651 0.7700 32 1 1.4065 -6.6975 1.3499 33 1 5.0011 -7.2720 0.9632 34 1 4.2010 -7.6485 2.5079 35 1 5.8885 -8.9511 3.1923 36 1 7.1833 -8.6400 1.9949 37 1 7.6763 -8.9828 4.7037 38 1 8.7170 -7.9895 3.6390 39 1 8.0623 -6.0951 4.7665 40 1 7.0217 -7.0883 5.8312 41 1 6.0133 -5.2539 4.0102 42 1 5.1165 -6.7172 4.5217 43 1 1.5138 -4.0616 2.0545 44 1 3.1189 -3.3133 1.8529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000921422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:57 Heat of formation + Delta-G solvation = -13.489273 kcal Electronic energy + Delta-G solvation = -22787.575582 eV Core-core repulsion = 19547.042095 eV Total energy + Delta-G solvation = -3240.533486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22097 -38.59780 -37.02980 -34.48076 -32.60159 -32.13024 -31.13531 -28.90967 -28.52485 -26.84772 -24.56118 -23.88352 -21.89576 -21.45601 -20.98002 -20.12865 -18.67561 -17.08520 -16.98811 -16.41259 -15.86744 -15.43658 -15.08190 -14.62801 -14.20534 -14.12936 -13.96544 -13.50480 -13.37684 -13.05111 -12.77027 -12.50987 -12.33890 -12.26602 -12.21038 -11.70619 -11.38628 -11.37307 -11.09798 -11.02644 -10.83330 -10.68056 -10.60990 -10.56944 -10.18961 -9.82134 -9.70327 -9.39001 -9.05080 -8.57718 -8.30099 -6.98547 -5.77579 -3.07295 2.83228 3.12230 3.46226 3.51633 3.54510 3.91804 4.46445 4.50196 4.59797 4.77785 4.80850 4.89191 5.05799 5.10355 5.13537 5.22330 5.25849 5.37526 5.49268 5.52779 5.54383 5.61580 5.62273 5.69064 5.79397 5.87705 5.92345 6.01292 6.03786 6.16803 6.18161 6.24823 6.35065 6.49839 6.70320 6.74273 6.81255 6.85737 7.03489 7.69230 7.73576 8.40194 8.45890 9.52558 10.06490 10.41744 11.44743 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.003989 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.715195 B = 7016.993126 C = 8078.458076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.108 3.892 15 N -0.608 5.608 16 C 0.510 3.490 17 O -0.526 6.526 18 C 0.027 3.973 19 N -0.495 5.495 20 C 0.030 3.970 21 C -0.123 4.123 22 C -0.127 4.127 23 C 0.028 3.972 24 C 0.094 3.906 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.502 -21.131 4.707 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.016 4.016 15 N -0.342 5.342 16 C 0.296 3.704 17 O -0.403 6.403 18 C -0.104 4.104 19 N -0.219 5.219 20 C -0.098 4.098 21 C -0.162 4.162 22 C -0.165 4.165 23 C -0.099 4.099 24 C -0.031 4.031 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.265 -20.125 4.640 22.636 hybrid contribution -0.637 0.322 0.425 0.830 sum 8.628 -19.804 5.064 22.187 Atomic orbital electron populations 1.69663 1.05130 1.25751 1.57582 1.24741 0.95514 0.97753 1.02686 0.86189 0.78842 0.83679 0.77545 1.21671 1.21739 1.20562 1.19281 0.91127 0.83982 1.42900 0.91025 1.42380 1.05790 0.99627 1.88116 1.20577 0.94886 0.86377 0.92413 0.93080 1.21824 0.98677 0.94130 1.01811 1.21883 1.00974 0.98229 0.95788 1.21726 0.96895 0.88969 0.93999 1.48297 1.18790 1.11210 1.55949 1.20367 0.80884 0.90410 0.78691 1.90647 1.60967 1.44196 1.44451 1.22244 0.91189 0.95272 1.01735 1.65307 1.22095 1.16645 1.17856 1.23191 0.97435 0.90132 0.99057 1.22277 0.99351 0.97904 0.96618 1.22341 0.98282 0.97340 0.98525 1.23376 0.95988 1.03405 0.87111 1.22847 0.97613 0.81637 1.00977 0.93483 0.78106 0.91406 0.92080 0.91518 0.91029 0.90544 0.91476 0.87880 0.92146 0.93971 0.90044 0.91519 0.91012 0.90952 0.91625 0.87058 0.94680 0.92217 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.72 -17.98 5.12 -53.09 -0.27 -18.25 16 10 C 0.17 3.36 2.93 -67.59 -0.20 3.17 16 11 H 0.05 1.10 8.08 -51.92 -0.42 0.68 16 12 C -0.13 -1.96 5.35 -26.69 -0.14 -2.11 16 13 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 14 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 15 N -0.61 -9.26 2.97 -172.51 -0.51 -9.77 16 16 C 0.51 8.09 7.41 -10.99 -0.08 8.01 16 17 O -0.53 -10.48 13.08 5.56 0.07 -10.40 16 18 C 0.03 0.32 3.89 -4.98 -0.02 0.30 16 19 N -0.49 -6.19 5.33 -231.41 -1.23 -7.43 16 20 C 0.03 0.27 6.49 -2.18 -0.01 0.26 16 21 C -0.12 -1.05 7.00 -25.35 -0.18 -1.22 16 22 C -0.13 -1.27 7.00 -25.34 -0.18 -1.45 16 23 C 0.03 0.37 5.31 -2.18 -0.01 0.35 16 24 C 0.09 1.78 6.05 -3.49 -0.02 1.76 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.39 10.10 7.80 -40.82 -0.32 9.78 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.03 7.69 -51.93 -0.40 0.63 16 34 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 35 H 0.04 0.34 7.82 -51.93 -0.41 -0.06 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.11 1.78 6.05 -51.93 -0.31 1.46 16 42 H 0.03 0.44 8.00 -51.93 -0.42 0.02 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 2.04 7.00 -51.93 -0.36 1.67 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -32.47 341.48 -9.91 -42.38 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.54 Total: 6.76 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.27 Total: 1.20 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -1.29 Total: -62.93 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.47 -9.91 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000921422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.895 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds