Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21273 * 119.99996 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99675 * 179.97438 * 14 13 12 17 17 N 1.46898 * 109.46932 * 180.02562 * 16 14 13 18 18 C 1.48531 * 111.00098 * 52.60219 * 17 16 14 19 19 C 1.54938 * 103.22676 * 159.72534 * 18 17 16 20 20 C 1.54602 * 102.91976 * 322.58317 * 19 18 17 21 21 C 1.47901 * 111.00019 * 170.00153 * 17 16 14 22 22 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 23 23 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 24 24 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 26 26 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 27 27 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 28 28 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 29 29 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 30 30 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 31 31 H 1.08998 * 109.47131 * 300.00301 * 16 14 13 32 32 H 1.08991 * 109.47148 * 60.00419 * 16 14 13 33 33 H 1.09002 * 110.66825 * 278.15154 * 18 17 16 34 34 H 1.08998 * 110.66829 * 41.28980 * 18 17 16 35 35 H 1.09002 * 110.72334 * 204.22840 * 19 18 17 36 36 H 1.08999 * 110.72870 * 80.94151 * 19 18 17 37 37 H 1.08993 * 110.31140 * 263.04144 * 20 19 18 38 38 H 1.09006 * 110.38947 * 140.91864 * 20 19 18 39 39 H 1.09000 * 109.91854 * 333.50356 * 21 17 16 40 40 H 1.08998 * 109.91849 * 94.60671 * 21 17 16 41 41 H 1.09002 * 109.49848 * 178.74812 * 22 12 11 42 42 H 1.08999 * 109.49849 * 58.64620 * 22 12 11 43 43 H 1.09004 * 109.59094 * 246.19900 * 23 9 7 44 44 H 1.09001 * 109.59077 * 6.49172 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5951 -0.9854 -3.4494 16 6 7.8611 -2.7947 -4.9412 17 7 8.9466 -1.9620 -5.4762 18 6 9.8757 -1.5406 -4.3967 19 6 11.1661 -1.1632 -5.1669 20 6 11.2183 -2.2211 -6.2931 21 6 9.7694 -2.7207 -6.4431 22 6 4.8755 -2.9898 -1.0921 23 6 4.2351 -2.2628 0.0946 24 1 -0.4850 0.8401 0.0004 25 1 2.9908 0.3501 -1.7559 26 1 4.5579 0.3822 -0.9097 27 1 3.7035 -1.5726 -3.0945 28 1 4.9277 -0.2876 -3.2372 29 1 6.2781 -1.3980 -1.4672 30 1 5.8557 -3.5342 -3.4126 31 1 8.2692 -3.7437 -4.5934 32 1 7.1258 -2.9805 -5.7239 33 1 9.4794 -0.6764 -3.8636 34 1 10.0653 -2.3646 -3.7089 35 1 12.0394 -1.2453 -4.5199 36 1 11.0867 -0.1594 -5.5840 37 1 11.8747 -3.0436 -6.0095 38 1 11.5606 -1.7684 -7.2238 39 1 9.7188 -3.7861 -6.2182 40 1 9.4136 -2.5381 -7.4571 41 1 5.6320 -3.6849 -0.7278 42 1 4.1091 -3.5392 -1.6388 43 1 5.0116 -1.7874 0.6940 44 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004147981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = -2.841409 kcal Electronic energy + Delta-G solvation = -22721.321500 eV Core-core repulsion = 19481.249740 eV Total energy + Delta-G solvation = -3240.071760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21599 -38.63916 -37.38888 -34.56560 -32.68203 -32.04948 -30.41282 -30.15402 -29.01623 -26.88964 -24.68056 -22.85704 -22.10066 -21.36790 -21.04259 -20.32581 -19.55091 -17.23086 -16.75455 -16.42493 -16.00077 -15.62275 -15.27340 -14.81682 -14.21915 -14.16976 -13.76524 -13.68926 -13.40066 -13.11093 -12.87954 -12.59148 -12.39541 -12.33021 -11.92845 -11.82287 -11.74584 -11.54284 -11.23718 -10.95289 -10.84429 -10.81325 -10.60414 -10.15794 -10.03292 -9.93265 -9.49242 -9.48656 -8.83540 -8.61206 -8.57572 -6.99216 -5.94735 -3.30914 2.68723 3.10043 3.36259 3.51535 3.55267 3.86136 4.43133 4.48061 4.54833 4.69639 4.78726 4.95827 4.98997 5.07243 5.13677 5.18659 5.30053 5.30960 5.41910 5.43963 5.55182 5.61794 5.65248 5.78847 5.82272 5.95419 6.01772 6.04499 6.13421 6.19386 6.32074 6.43149 6.55637 6.64241 6.66455 6.68280 6.70413 6.78094 6.92330 7.61221 7.96039 8.32511 8.33388 8.93677 9.72299 10.09649 11.21073 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035023 B = 0.003519 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.281356 B = 7955.535743 C = 8295.282321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.086 0.914 9 N -0.607 5.607 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.152 3.848 13 N -0.725 5.725 14 C 0.510 3.490 15 O -0.526 6.526 16 C 0.027 3.973 17 N -0.502 5.502 18 C 0.031 3.969 19 C -0.126 4.126 20 C -0.131 4.131 21 C 0.034 3.966 22 C -0.140 4.140 23 C 0.152 3.848 24 H 0.263 0.737 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.396 0.604 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.181 -8.744 -11.280 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.103 0.897 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.049 3.951 13 N -0.376 5.376 14 C 0.296 3.704 15 O -0.402 6.402 16 C -0.105 4.105 17 N -0.226 5.226 18 C -0.096 4.096 19 C -0.165 4.165 20 C -0.169 4.169 21 C -0.094 4.094 22 C -0.180 4.180 23 C 0.025 3.975 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.230 0.770 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.038 -7.416 -11.240 24.143 hybrid contribution 0.505 -0.302 0.112 0.599 sum 20.543 -7.718 -11.128 24.606 Atomic orbital electron populations 1.69838 1.05738 1.26598 1.52952 1.25276 0.95227 0.97632 0.99374 0.86968 0.80051 0.84603 0.77148 1.21536 1.23118 1.19495 1.18911 0.84927 0.94767 1.40363 0.89653 1.44400 1.08642 1.33379 1.46613 1.21309 0.97232 0.92010 0.89197 1.22385 0.97561 0.98698 0.99407 1.20978 0.94365 0.93639 0.86159 1.46256 1.34351 1.22117 1.34893 1.20410 0.80244 0.86445 0.83337 1.90642 1.63049 1.20186 1.66295 1.22245 0.96309 0.95099 0.96841 1.64671 1.09324 1.35336 1.13290 1.23538 0.91174 1.01819 0.93077 1.22534 0.97510 0.99496 0.96920 1.22393 0.95900 0.98890 0.99746 1.22936 0.92871 0.95867 0.97726 1.22326 0.99511 0.97614 0.98544 1.20857 0.92477 0.91495 0.92655 0.92751 0.90750 0.95524 0.91687 0.92264 0.90021 0.77048 0.92027 0.87797 0.86822 0.94584 0.91223 0.90681 0.91664 0.91016 0.93846 0.90195 0.92229 0.91364 0.95770 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.85 24.34 -169.99 -4.14 18.71 16 4 H -0.29 -7.27 6.62 56.52 0.37 -6.89 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.91 6.64 56.52 0.38 -6.53 16 7 C -0.26 -7.29 10.03 -15.06 -0.15 -7.44 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.61 -14.38 2.77 -172.32 -0.48 -14.86 16 10 C 0.13 2.90 4.20 -3.71 -0.02 2.88 16 11 C -0.14 -2.62 5.66 -26.59 -0.15 -2.77 16 12 C 0.15 2.43 2.41 -67.87 -0.16 2.26 16 13 N -0.73 -9.15 5.08 -53.75 -0.27 -9.43 16 14 C 0.51 6.92 7.50 -10.98 -0.08 6.83 16 15 O -0.53 -9.13 13.18 5.56 0.07 -9.06 16 16 C 0.03 0.27 5.52 -4.97 -0.03 0.24 16 17 N -0.50 -5.67 5.26 -231.90 -1.22 -6.89 16 18 C 0.03 0.36 5.30 -1.90 -0.01 0.35 16 19 C -0.13 -1.15 7.06 -24.87 -0.18 -1.32 16 20 C -0.13 -1.00 6.93 -25.37 -0.18 -1.17 16 21 C 0.03 0.29 6.70 -2.75 -0.02 0.27 16 22 C -0.14 -2.13 5.55 -26.61 -0.15 -2.28 16 23 C 0.15 2.90 6.52 -3.71 -0.02 2.87 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.07 1.84 4.49 -51.93 -0.23 1.61 16 26 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 30 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 31 H 0.06 0.50 7.81 -51.93 -0.41 0.10 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.64 5.97 -51.93 -0.31 1.33 16 34 H 0.04 0.40 8.02 -51.93 -0.42 -0.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.04 0.32 7.57 -51.93 -0.39 -0.07 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.69 334.54 -9.00 -41.69 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.54 Total: 0.67 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.23 Total: 1.32 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -1.20 Total: -58.37 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.14 Total: 18.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.69 -9.00 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004147981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.845 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds