Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47847 * 110.99797 * 2 1 4 4 C 1.54913 * 104.79328 * 146.36127 * 3 2 1 5 5 C 1.55395 * 101.74400 * 323.01912 * 4 3 2 6 6 C 1.47442 * 111.00069 * 120.84184 * 2 1 3 7 7 H 1.08997 * 109.89154 * 117.17313 * 6 2 1 8 8 C 1.50706 * 109.88571 * 356.14841 * 6 2 1 9 9 O 1.21283 * 120.00365 * 306.04560 * 8 6 2 10 10 N 1.34777 * 119.99625 * 126.04832 * 8 6 2 11 11 C 1.46500 * 119.99944 * 179.97438 * 10 8 6 12 12 H 1.09004 * 109.49734 * 324.93887 * 11 10 8 13 13 C 1.53043 * 109.50012 * 204.84048 * 11 10 8 14 14 C 1.53039 * 109.53855 * 178.68722 * 13 11 10 15 15 C 1.52762 * 109.38604 * 61.23491 * 14 13 11 16 16 N 1.46922 * 109.01075 * 305.59080 * 15 14 13 17 17 C 1.36940 * 120.63305 * 233.58146 * 16 15 14 18 18 H 1.08000 * 119.99795 * 148.71631 * 17 16 15 19 19 C 1.38807 * 119.99997 * 328.71667 * 17 16 15 20 20 N 1.31627 * 119.99846 * 334.53859 * 19 17 16 21 21 Si 1.86794 * 120.00208 * 154.26037 * 19 17 16 22 22 H 1.48503 * 109.47002 * 60.00417 * 21 19 17 23 23 H 1.48507 * 109.47223 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47404 * 300.00250 * 21 19 17 25 25 C 1.46931 * 118.73741 * 53.30802 * 16 15 14 26 26 H 1.08995 * 109.47328 * 308.64399 * 1 2 3 27 27 H 1.09002 * 109.46840 * 68.64225 * 1 2 3 28 28 H 1.09006 * 109.47281 * 188.64071 * 1 2 3 29 29 H 1.08998 * 110.37744 * 265.19063 * 3 2 1 30 30 H 1.09002 * 110.37468 * 27.53848 * 3 2 1 31 31 H 1.09002 * 110.99107 * 81.02260 * 4 3 2 32 32 H 1.09000 * 110.98889 * 204.80158 * 4 3 2 33 33 H 1.09007 * 110.67857 * 277.17610 * 5 4 3 34 34 H 1.09001 * 110.84579 * 153.86222 * 5 4 3 35 35 H 0.97001 * 120.00523 * 0.02562 * 10 8 6 36 36 H 1.09003 * 109.45276 * 298.70101 * 13 11 10 37 37 H 1.08999 * 109.46038 * 58.66244 * 13 11 10 38 38 H 1.08994 * 109.49862 * 181.31632 * 14 13 11 39 39 H 1.09000 * 109.49634 * 301.38002 * 14 13 11 40 40 H 1.08997 * 109.51287 * 185.70593 * 15 14 13 41 41 H 1.09002 * 109.43096 * 65.42745 * 15 14 13 42 42 H 0.97005 * 119.99692 * 354.06216 * 20 19 17 43 43 H 1.08999 * 109.58860 * 66.42924 * 25 16 15 44 44 H 1.09003 * 109.58585 * 186.71219 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8297 5 6 2.9181 0.2789 1.9330 6 6 1.9974 -0.7057 1.1818 7 1 2.5673 -1.5801 0.8676 8 6 0.8610 -1.1291 2.0766 9 8 0.0529 -0.3098 2.4595 10 7 0.7429 -2.4183 2.4514 11 6 -0.3614 -2.8299 3.3217 12 1 -0.5825 -2.0321 4.0308 13 6 0.0337 -4.0968 4.0839 14 6 -1.1067 -4.5090 5.0176 15 6 -2.3550 -4.8113 4.1906 16 7 -2.6591 -3.6514 3.3416 17 6 -3.9016 -3.0760 3.3652 18 1 -4.0096 -2.0167 3.1848 19 6 -5.0221 -3.8543 3.6210 20 7 -5.0040 -5.1426 3.3515 21 14 -6.5529 -3.0751 4.3549 22 1 -7.0534 -2.0141 3.4443 23 1 -7.6014 -4.1122 4.5292 24 1 -6.2212 -2.4792 5.6741 25 6 -1.6030 -3.1167 2.4713 26 1 -0.3634 0.6417 0.8026 27 1 -0.3633 0.3743 -0.9571 28 1 -0.3634 -1.0160 0.1544 29 1 2.2147 1.7039 -1.0182 30 1 1.2889 2.0593 0.4724 31 1 4.1302 0.9282 0.2244 32 1 3.5497 2.2722 1.2636 33 1 2.3781 0.7706 2.7422 34 1 3.8017 -0.2335 2.3134 35 1 1.3894 -3.0736 2.1456 36 1 0.2307 -4.9006 3.3745 37 1 0.9314 -3.9024 4.6708 38 1 -0.8155 -5.3978 5.5772 39 1 -1.3206 -3.6961 5.7115 40 1 -3.1950 -5.0064 4.8573 41 1 -2.1724 -5.6846 3.5644 42 1 -4.2415 -5.5320 2.8956 43 1 -1.3578 -3.8489 1.7020 44 1 -1.9479 -2.1953 2.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006917629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -10.667999 kcal Electronic energy + Delta-G solvation = -23376.204053 eV Core-core repulsion = 20135.792906 eV Total energy + Delta-G solvation = -3240.411147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.67457 -38.35926 -37.02374 -34.50307 -32.61923 -32.16865 -30.46825 -30.00592 -28.25508 -25.62628 -25.07303 -23.19793 -22.19949 -21.46172 -21.22672 -20.01636 -19.14124 -17.38864 -17.28019 -16.30054 -15.60125 -15.28290 -14.97552 -14.34152 -14.19709 -14.09168 -13.67108 -13.58470 -13.49342 -12.94972 -12.77646 -12.46368 -12.40373 -12.05129 -11.90384 -11.60136 -11.42564 -11.33585 -11.12712 -11.01346 -10.74650 -10.69952 -10.37750 -10.12422 -10.07425 -9.98277 -9.76224 -9.33368 -8.91262 -8.38476 -8.24486 -6.86029 -6.05855 -3.25239 2.64510 3.28162 3.52598 3.55088 3.73400 3.92912 4.33382 4.46815 4.61113 4.73213 4.93445 5.12149 5.17887 5.24703 5.31033 5.36578 5.44155 5.52262 5.55486 5.56590 5.59462 5.63456 5.68709 5.90375 5.92705 5.96606 6.01801 6.10312 6.16175 6.37112 6.41885 6.54253 6.60094 6.69363 6.72633 6.82332 6.88154 7.03919 7.15490 7.66799 8.07714 8.36785 8.60235 9.12644 9.85496 10.29657 11.21607 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.004400 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.820967 B = 6362.034997 C = 7068.400184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.510 5.510 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.128 4.128 6 C 0.052 3.948 7 H 0.099 0.901 8 C 0.499 3.501 9 O -0.534 6.534 10 N -0.719 5.719 11 C 0.125 3.875 12 H 0.085 0.915 13 C -0.115 4.115 14 C -0.134 4.134 15 C 0.150 3.850 16 N -0.593 5.593 17 C -0.351 4.351 18 H 0.054 0.946 19 C -0.020 4.020 20 N -0.912 5.912 21 Si 1.064 2.936 22 H -0.292 1.292 23 H -0.285 1.285 24 H -0.293 1.293 25 C 0.145 3.855 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.395 0.605 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.017 0.983 42 H 0.268 0.732 43 H 0.015 0.985 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.080 7.221 -3.375 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.234 5.234 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.059 4.059 7 H 0.117 0.883 8 C 0.284 3.716 9 O -0.411 6.411 10 N -0.369 5.369 11 C 0.020 3.980 12 H 0.103 0.897 13 C -0.153 4.153 14 C -0.174 4.174 15 C 0.024 3.976 16 N -0.317 5.317 17 C -0.480 4.480 18 H 0.072 0.928 19 C -0.222 4.222 20 N -0.552 5.552 21 Si 0.893 3.107 22 H -0.219 1.219 23 H -0.211 1.211 24 H -0.220 1.220 25 C 0.018 3.982 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.229 0.771 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.079 0.921 43 H 0.032 0.968 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.050 7.234 -2.971 17.853 hybrid contribution 1.595 0.323 -0.116 1.632 sum 17.645 7.558 -3.087 19.442 Atomic orbital electron populations 1.22948 0.86487 1.02965 1.01996 1.64046 1.09439 1.14560 1.35404 1.23154 0.95654 0.89631 1.00560 1.22734 0.97743 0.99276 0.96661 1.22785 0.98960 0.96529 0.98430 1.22625 0.94371 0.99132 0.89794 0.88336 1.20946 0.86770 0.82658 0.81192 1.90705 1.43651 1.51526 1.55179 1.46256 1.30234 1.09127 1.51315 1.21718 0.86810 0.96809 0.92708 0.89683 1.21667 0.98390 0.96668 0.98556 1.21986 0.96649 1.00523 0.98231 1.20875 0.94911 0.89208 0.92619 1.44026 1.08857 1.34914 1.43932 1.19946 0.83768 0.92885 1.51434 0.92814 1.25891 1.00179 0.96254 0.99914 1.70787 1.32297 1.12913 1.39168 0.83554 0.75791 0.74911 0.76447 1.21907 1.21078 1.21982 1.21177 0.88040 0.97406 0.91580 0.91707 0.91762 0.91523 0.89896 0.92953 0.90476 0.90520 0.90387 0.90169 0.77123 0.92200 0.92812 0.92451 0.92109 0.90522 0.96460 0.92140 0.96761 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.21 60.06 0.49 0.55 16 2 N -0.51 -6.41 5.44 -232.94 -1.27 -7.68 16 3 C 0.04 0.39 6.73 -2.29 -0.02 0.38 16 4 C -0.13 -1.07 7.08 -24.45 -0.17 -1.24 16 5 C -0.13 -1.28 6.47 -24.77 -0.16 -1.44 16 6 C 0.05 0.62 3.83 -67.87 -0.26 0.36 16 7 H 0.10 0.97 7.94 -51.93 -0.41 0.56 16 8 C 0.50 7.57 4.86 -10.98 -0.05 7.52 16 9 O -0.53 -10.27 13.52 5.55 0.08 -10.19 16 10 N -0.72 -10.31 5.08 -53.68 -0.27 -10.58 16 11 C 0.12 2.25 2.60 -67.81 -0.18 2.07 16 12 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 13 C -0.11 -1.82 5.35 -26.69 -0.14 -1.96 16 14 C -0.13 -2.46 6.06 -26.83 -0.16 -2.62 16 15 C 0.15 3.47 4.74 -3.93 -0.02 3.45 16 16 N -0.59 -15.18 2.80 -172.58 -0.48 -15.67 16 17 C -0.35 -10.12 9.44 -15.06 -0.14 -10.26 16 18 H 0.05 1.60 7.95 -52.49 -0.42 1.18 16 19 C -0.02 -0.57 4.64 -17.43 -0.08 -0.65 16 20 N -0.91 -27.52 12.56 55.49 0.70 -26.82 16 21 Si 1.06 25.76 29.99 -169.99 -5.10 20.66 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.15 3.21 6.09 -3.71 -0.02 3.19 16 26 H 0.06 1.08 5.84 -51.93 -0.30 0.78 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.09 6.97 -51.93 -0.36 0.72 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.59 7.63 -51.93 -0.40 0.20 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 4.40 8.46 -40.82 -0.35 4.06 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.99 6.58 -51.93 -0.34 1.65 16 41 H 0.02 0.41 7.90 -51.93 -0.41 0.00 16 42 H 0.27 8.15 6.95 -40.82 -0.28 7.86 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -32.56 337.66 -9.68 -42.23 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.50 Total: 3.62 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.92 Total: -0.66 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -1.33 Total: -60.75 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.56 -9.68 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006917629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.566 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds