Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48529 * 111.00222 * 2 1 4 4 C 1.54930 * 103.22793 * 159.71838 * 3 2 1 5 5 C 1.54599 * 102.92612 * 322.58850 * 4 3 2 6 6 C 1.47910 * 110.99768 * 117.39915 * 2 1 3 7 7 H 1.08998 * 110.08047 * 333.60102 * 6 2 1 8 8 C 1.50702 * 109.91679 * 94.80366 * 6 2 1 9 9 O 1.21277 * 119.99963 * 17.58535 * 8 6 2 10 10 N 1.34772 * 119.99424 * 197.58763 * 8 6 2 11 11 C 1.46505 * 119.99822 * 180.02562 * 10 8 6 12 12 H 1.08997 * 109.52019 * 34.91588 * 11 10 8 13 13 C 1.53036 * 109.49815 * 154.99986 * 11 10 8 14 14 C 1.53040 * 109.52386 * 181.30571 * 13 11 10 15 15 C 1.53190 * 109.31939 * 298.64317 * 14 13 11 16 16 N 1.46923 * 108.77343 * 54.63425 * 15 14 13 17 17 C 1.36933 * 120.63258 * 126.37338 * 16 15 14 18 18 H 1.08004 * 120.00007 * 332.60692 * 17 16 15 19 19 C 1.38809 * 120.00333 * 152.60519 * 17 16 15 20 20 N 1.31624 * 120.00279 * 159.36350 * 19 17 16 21 21 Si 1.86799 * 119.99886 * 339.36762 * 19 17 16 22 22 H 1.48502 * 109.47406 * 92.90686 * 21 19 17 23 23 H 1.48504 * 109.47139 * 212.90827 * 21 19 17 24 24 H 1.48494 * 109.47265 * 332.90554 * 21 19 17 25 25 C 1.46936 * 118.73827 * 306.39295 * 16 15 14 26 26 H 1.08997 * 109.47164 * 302.60081 * 1 2 3 27 27 H 1.09002 * 109.46763 * 62.60420 * 1 2 3 28 28 H 1.09004 * 109.47184 * 182.60162 * 1 2 3 29 29 H 1.09006 * 110.66613 * 41.28588 * 3 2 1 30 30 H 1.08997 * 110.80916 * 278.22647 * 3 2 1 31 31 H 1.09001 * 110.72588 * 204.22738 * 4 3 2 32 32 H 1.09003 * 110.87638 * 81.01387 * 4 3 2 33 33 H 1.09002 * 110.30868 * 263.04342 * 5 4 3 34 34 H 1.08994 * 110.39279 * 140.91665 * 5 4 3 35 35 H 0.97003 * 120.00657 * 359.97438 * 10 8 6 36 36 H 1.09000 * 109.46016 * 61.29741 * 13 11 10 37 37 H 1.09000 * 109.46177 * 301.32170 * 13 11 10 38 38 H 1.08998 * 109.49590 * 58.59557 * 14 13 11 39 39 H 1.09006 * 109.49718 * 178.69030 * 14 13 11 40 40 H 1.08992 * 109.58961 * 174.42622 * 15 14 13 41 41 H 1.09003 * 109.58525 * 294.70774 * 15 14 13 42 42 H 0.96996 * 119.99796 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.58323 * 173.39457 * 25 16 15 44 44 H 1.08997 * 109.58923 * 293.68061 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2983 0.1052 1.5931 6 6 1.9991 -0.6355 1.2260 7 1 1.2771 -0.5433 2.0373 8 6 2.2938 -2.0900 0.9640 9 8 2.3969 -2.4921 -0.1755 10 7 2.4427 -2.9438 1.9961 11 6 2.7297 -4.3577 1.7415 12 1 3.3655 -4.4474 0.8608 13 6 3.4465 -4.9594 2.9524 14 6 3.7756 -6.4279 2.6742 15 6 2.4749 -7.2045 2.4468 16 7 1.7108 -6.5448 1.3793 17 6 1.2807 -7.2530 0.2891 18 1 1.8253 -8.1271 -0.0362 19 6 0.1447 -6.8477 -0.3979 20 7 -0.0501 -7.2423 -1.6384 21 14 -1.1075 -5.7419 0.4380 22 1 -0.7950 -4.3222 0.1346 23 1 -2.4673 -6.0673 -0.0624 24 1 -1.0558 -5.9572 1.9064 25 6 1.4172 -5.1104 1.5036 26 1 -0.3633 0.5537 0.8657 27 1 -0.3633 0.4729 -0.9124 28 1 -0.3634 -1.0266 0.0466 29 1 1.4238 2.0204 0.6730 30 1 2.0041 1.8004 -1.0084 31 1 3.8123 2.1351 0.9716 32 1 4.1140 0.8846 -0.2771 33 1 3.2136 0.5484 2.5853 34 1 4.1468 -0.5779 1.5558 35 1 2.3605 -2.6221 2.9075 36 1 2.8002 -4.8917 3.8276 37 1 4.3689 -4.4094 3.1387 38 1 4.4016 -6.4982 1.7847 39 1 4.3067 -6.8497 3.5276 40 1 2.7071 -8.2276 2.1512 41 1 1.8894 -7.2138 3.3661 42 1 -0.8438 -6.9587 -2.1185 43 1 0.9515 -4.7520 0.5856 44 1 0.7423 -4.9470 2.3437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006917631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = -2.058315 kcal Electronic energy + Delta-G solvation = -23537.366000 eV Core-core repulsion = 20297.328197 eV Total energy + Delta-G solvation = -3240.037803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13570 -38.44499 -37.08064 -34.17303 -32.68677 -32.28830 -30.67308 -30.18902 -28.41526 -25.76640 -25.24701 -23.25492 -22.30155 -21.37529 -21.14666 -19.98943 -19.28353 -17.20901 -16.77774 -16.24970 -15.75905 -15.42729 -14.72959 -14.33924 -14.15457 -14.00169 -13.82317 -13.68063 -13.38193 -13.14027 -12.73041 -12.60617 -12.31989 -12.19823 -11.99601 -11.67606 -11.52678 -11.49649 -11.23342 -11.04933 -10.93760 -10.70702 -10.57633 -10.20301 -10.11623 -9.71200 -9.46882 -9.33380 -8.77801 -8.46054 -8.42533 -6.91386 -5.87735 -3.23823 2.98134 3.27130 3.42502 3.51341 3.54832 4.01383 4.44424 4.47632 4.61275 4.70541 4.97534 5.02430 5.11786 5.22688 5.25847 5.29202 5.30557 5.37597 5.48075 5.53565 5.54364 5.56538 5.65277 5.82197 5.87388 5.92736 5.97800 5.99717 6.07770 6.24285 6.29315 6.48173 6.61702 6.65645 6.67437 6.74367 6.87232 6.87575 7.01199 7.87505 8.03076 8.40101 8.67321 9.00246 9.79384 10.15347 11.28198 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.006064 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.858780 B = 4615.949163 C = 5697.014595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.497 5.497 3 C 0.036 3.964 4 C -0.122 4.122 5 C -0.118 4.118 6 C 0.048 3.952 7 H 0.071 0.929 8 C 0.512 3.488 9 O -0.502 6.502 10 N -0.731 5.731 11 C 0.128 3.872 12 H 0.090 0.910 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.146 3.854 16 N -0.602 5.602 17 C -0.264 4.264 18 H 0.087 0.913 19 C 0.029 3.971 20 N -0.904 5.904 21 Si 0.881 3.119 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.273 1.273 25 C 0.121 3.879 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.391 0.609 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.078 0.922 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 16.941 11.536 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.221 5.221 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.157 4.157 6 C -0.065 4.065 7 H 0.089 0.911 8 C 0.295 3.705 9 O -0.374 6.374 10 N -0.384 5.384 11 C 0.022 3.978 12 H 0.108 0.892 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.020 3.980 16 N -0.325 5.325 17 C -0.392 4.392 18 H 0.104 0.896 19 C -0.171 4.171 20 N -0.546 5.546 21 Si 0.711 3.289 22 H -0.214 1.214 23 H -0.232 1.232 24 H -0.198 1.198 25 C -0.006 4.006 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.287 16.304 10.030 20.148 hybrid contribution -1.282 1.229 1.579 2.376 sum 5.006 17.533 11.609 21.616 Atomic orbital electron populations 1.22557 0.87127 1.02687 1.00815 1.64316 1.08364 1.14153 1.35250 1.23261 0.94925 0.89490 1.01459 1.22477 0.96901 0.98068 0.98538 1.22333 0.96346 0.97744 0.99248 1.22386 0.97897 0.93371 0.92830 0.91109 1.20321 0.77592 0.87005 0.85535 1.90766 1.47341 1.77903 1.21390 1.46153 1.74023 1.09542 1.08675 1.21696 0.99108 0.78232 0.98721 0.89164 1.21675 0.99397 0.97040 0.97253 1.22004 0.99711 0.94464 1.01057 1.20971 0.90406 0.95797 0.90861 1.44286 1.63950 1.02807 1.21497 1.18889 1.06557 1.11172 1.02584 0.89586 1.25247 0.97632 0.98176 0.96008 1.69833 1.28437 1.47649 1.08726 0.86953 0.81395 0.80347 0.80161 1.21446 1.23181 1.19818 1.21677 0.93955 0.84804 1.00179 0.95465 0.90743 0.91001 0.93728 0.89600 0.90760 0.90278 0.90603 0.90368 0.77613 0.92220 0.92517 0.91644 0.92207 0.91692 0.95993 0.92775 0.90358 0.96027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.40 60.07 0.56 0.78 16 2 N -0.50 -7.05 4.75 -232.16 -1.10 -8.16 16 3 C 0.04 0.37 6.56 -1.90 -0.01 0.36 16 4 C -0.12 -1.14 7.06 -24.87 -0.18 -1.31 16 5 C -0.12 -1.18 6.56 -25.37 -0.17 -1.35 16 6 C 0.05 0.63 2.87 -67.79 -0.19 0.43 16 7 H 0.07 0.80 7.74 -51.93 -0.40 0.40 16 8 C 0.51 9.00 6.83 -10.99 -0.08 8.93 16 9 O -0.50 -11.67 16.22 5.56 0.09 -11.58 16 10 N -0.73 -11.45 5.08 -53.70 -0.27 -11.72 16 11 C 0.13 2.41 2.60 -67.82 -0.18 2.23 16 12 H 0.09 1.98 7.58 -51.93 -0.39 1.59 16 13 C -0.12 -1.73 5.36 -26.69 -0.14 -1.87 16 14 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 15 C 0.15 2.87 6.52 -3.71 -0.02 2.85 16 16 N -0.60 -14.89 2.77 -172.34 -0.48 -15.37 16 17 C -0.26 -7.73 10.03 -15.06 -0.15 -7.88 16 18 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.03 0.88 5.23 -17.43 -0.09 0.79 16 20 N -0.90 -29.13 13.97 55.49 0.78 -28.36 16 21 Si 0.88 23.83 24.34 -169.99 -4.14 19.69 16 22 H -0.29 -7.81 6.62 56.52 0.37 -7.43 16 23 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 24 H -0.27 -7.13 6.63 56.52 0.38 -6.76 16 25 C 0.12 2.81 3.78 -3.72 -0.01 2.79 16 26 H 0.03 0.29 8.01 -51.93 -0.42 -0.13 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.39 7.96 -51.93 -0.41 -0.02 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 35 H 0.39 4.55 8.60 -40.82 -0.35 4.20 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 43 H 0.08 2.14 4.50 -51.93 -0.23 1.90 16 44 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -36.18 339.38 -8.48 -44.66 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.65 Total: 1.24 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.82 Total: 4.47 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -1.08 Total: -63.60 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -4.14 Total: 19.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.18 -8.48 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006917631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.606 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds