Wall clock time and date at job start Tue Mar 31 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47840 * 110.99806 * 2 1 4 4 C 1.54908 * 104.79555 * 146.36665 * 3 2 1 5 5 C 1.55140 * 101.65050 * 322.92735 * 4 3 2 6 6 C 1.47442 * 110.99816 * 120.84447 * 2 1 3 7 7 H 1.09002 * 109.88867 * 117.17963 * 6 2 1 8 8 C 1.50696 * 109.89254 * 356.14382 * 6 2 1 9 9 O 1.21284 * 120.00261 * 307.38594 * 8 6 2 10 10 N 1.34776 * 119.99853 * 127.10404 * 8 6 2 11 11 C 1.46503 * 120.00168 * 180.27956 * 10 8 6 12 12 H 1.09006 * 109.49459 * 35.06522 * 11 10 8 13 13 C 1.53040 * 109.49795 * 155.16222 * 11 10 8 14 14 C 1.53042 * 109.53740 * 181.31755 * 13 11 10 15 15 C 1.53190 * 109.31195 * 298.63614 * 14 13 11 16 16 N 1.46925 * 108.77721 * 54.63432 * 15 14 13 17 17 C 1.36939 * 120.63134 * 126.41364 * 16 15 14 18 18 H 1.08002 * 119.99306 * 325.79827 * 17 16 15 19 19 C 1.38806 * 120.00026 * 145.79740 * 17 16 15 20 20 N 1.31623 * 119.99851 * 164.65459 * 19 17 16 21 21 Si 1.86798 * 119.99847 * 344.65550 * 19 17 16 22 22 H 1.48501 * 109.47265 * 90.53239 * 21 19 17 23 23 H 1.48508 * 109.47015 * 210.53245 * 21 19 17 24 24 H 1.48498 * 109.47594 * 330.52817 * 21 19 17 25 25 C 1.46928 * 118.73524 * 306.39349 * 16 15 14 26 26 H 1.08994 * 109.47299 * 310.38086 * 1 2 3 27 27 H 1.08996 * 109.47071 * 70.38926 * 1 2 3 28 28 H 1.09004 * 109.46772 * 190.38105 * 1 2 3 29 29 H 1.09004 * 110.37507 * 265.19023 * 3 2 1 30 30 H 1.08996 * 110.37355 * 27.42154 * 3 2 1 31 31 H 1.08994 * 110.99639 * 81.02240 * 4 3 2 32 32 H 1.09000 * 110.98929 * 204.83785 * 4 3 2 33 33 H 1.09010 * 110.70596 * 277.27312 * 5 4 3 34 34 H 1.09003 * 110.70567 * 154.04330 * 5 4 3 35 35 H 0.97003 * 119.99936 * 0.27466 * 10 8 6 36 36 H 1.09006 * 109.45710 * 301.33633 * 13 11 10 37 37 H 1.09001 * 109.46398 * 61.29810 * 13 11 10 38 38 H 1.08997 * 109.49596 * 178.68034 * 14 13 11 39 39 H 1.09006 * 109.52303 * 58.60151 * 14 13 11 40 40 H 1.08998 * 109.58437 * 294.84731 * 15 14 13 41 41 H 1.09005 * 109.70182 * 174.49134 * 15 14 13 42 42 H 0.96998 * 119.99441 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.58592 * 293.81809 * 25 16 15 44 44 H 1.09000 * 109.58021 * 173.39873 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9314 6 6 1.9974 -0.7057 1.1818 7 1 2.5673 -1.5801 0.8675 8 6 0.8612 -1.1291 2.0766 9 8 0.0393 -0.3145 2.4398 10 7 0.7551 -2.4142 2.4688 11 6 -0.3529 -2.8271 3.3337 12 1 -1.2468 -2.2588 3.0762 13 6 -0.6231 -4.3209 3.1397 14 6 -1.8017 -4.7462 4.0184 15 6 -1.4495 -4.5056 5.4897 16 7 -1.0480 -3.1021 5.6565 17 6 -1.6535 -2.3101 6.5953 18 1 -2.7004 -2.4466 6.8227 19 6 -0.9217 -1.3320 7.2544 20 7 -1.5431 -0.3823 7.9210 21 14 0.9451 -1.3636 7.1954 22 1 1.4173 -0.5671 6.0344 23 1 1.4899 -0.7823 8.4488 24 1 1.4124 -2.7662 7.0565 25 6 0.0157 -2.5648 4.7972 26 1 -0.3633 0.6657 0.7828 27 1 -0.3633 0.3449 -0.9680 28 1 -0.3633 -1.0109 0.1852 29 1 2.2148 1.7038 -1.0182 30 1 1.2880 2.0595 0.4706 31 1 4.1302 0.9282 0.2243 32 1 3.5495 2.2720 1.2639 33 1 2.3743 0.7747 2.7392 34 1 3.8001 -0.2279 2.3137 35 1 1.4123 -3.0658 2.1782 36 1 -0.8617 -4.5140 2.0938 37 1 0.2632 -4.8898 3.4208 38 1 -2.0085 -5.8049 3.8622 39 1 -2.6826 -4.1607 3.7548 40 1 -0.6259 -5.1582 5.7797 41 1 -2.3181 -4.7139 6.1144 42 1 -1.0317 0.3010 8.3819 43 1 0.9587 -3.0591 5.0307 44 1 0.1123 -1.4918 4.9631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006917634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:27 Heat of formation + Delta-G solvation = -2.168025 kcal Electronic energy + Delta-G solvation = -23726.797352 eV Core-core repulsion = 20486.754792 eV Total energy + Delta-G solvation = -3240.042560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63188 -38.41420 -37.01371 -34.32804 -32.72858 -32.13085 -30.74167 -30.21386 -28.49940 -25.62867 -25.29611 -23.32048 -22.35837 -21.39146 -21.16985 -20.05626 -19.27772 -17.28602 -16.82180 -16.36711 -15.58127 -15.50019 -14.92011 -14.83275 -14.22268 -14.02894 -13.84640 -13.54936 -13.30599 -12.93692 -12.74814 -12.53944 -12.46571 -12.15492 -11.85242 -11.56868 -11.54683 -11.37519 -11.25037 -11.05738 -10.91010 -10.75608 -10.63043 -10.25577 -10.19397 -9.78070 -9.75505 -9.53553 -8.87693 -8.55820 -8.26809 -6.87152 -5.93608 -3.37831 2.71621 3.30635 3.36397 3.45922 3.49464 3.96328 4.41880 4.53858 4.54721 4.77135 4.98798 5.07398 5.18032 5.19649 5.25663 5.31275 5.43032 5.46746 5.48527 5.59033 5.63095 5.71293 5.78545 5.81943 5.90517 5.94707 6.02506 6.07120 6.11031 6.21413 6.26130 6.43136 6.56380 6.64136 6.65826 6.73175 6.80159 6.84576 6.93451 7.70466 8.03716 8.37334 8.43566 8.95384 9.72585 10.11474 11.22284 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.006125 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.534926 B = 4570.596355 C = 5473.165414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.510 5.510 3 C 0.038 3.962 4 C -0.125 4.125 5 C -0.132 4.132 6 C 0.053 3.947 7 H 0.099 0.901 8 C 0.497 3.503 9 O -0.527 6.527 10 N -0.722 5.722 11 C 0.125 3.875 12 H 0.090 0.910 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.144 3.856 16 N -0.602 5.602 17 C -0.264 4.264 18 H 0.084 0.916 19 C 0.031 3.969 20 N -0.907 5.907 21 Si 0.887 3.113 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.122 3.878 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.395 0.605 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.263 0.737 43 H 0.023 0.977 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 -3.527 -16.316 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.235 5.235 3 C -0.090 4.090 4 C -0.163 4.163 5 C -0.171 4.171 6 C -0.058 4.058 7 H 0.117 0.883 8 C 0.282 3.718 9 O -0.403 6.403 10 N -0.373 5.373 11 C 0.019 3.981 12 H 0.108 0.892 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.019 3.981 16 N -0.326 5.326 17 C -0.393 4.393 18 H 0.101 0.899 19 C -0.169 4.169 20 N -0.550 5.550 21 Si 0.717 3.283 22 H -0.215 1.215 23 H -0.231 1.231 24 H -0.196 1.196 25 C -0.005 4.005 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.228 0.772 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.678 -3.047 -16.358 18.767 hybrid contribution 1.086 0.118 0.587 1.240 sum 9.765 -2.928 -15.771 18.779 Atomic orbital electron populations 1.22913 0.86854 1.02663 1.01744 1.64045 1.09229 1.14686 1.35544 1.23155 0.95814 0.89528 1.00497 1.22685 0.97614 0.99432 0.96612 1.22774 0.99155 0.96576 0.98549 1.22613 0.94414 0.99098 0.89715 0.88279 1.20965 0.87061 0.82681 0.81107 1.90745 1.42620 1.51189 1.55733 1.46265 1.29946 1.09756 1.51327 1.21768 0.89738 0.95071 0.91519 0.89231 1.21677 0.99435 0.94875 0.99423 1.21997 0.97648 0.99918 0.97631 1.21010 0.98209 0.85750 0.93152 1.44262 1.42940 1.06679 1.38724 1.18863 0.94127 1.12861 1.13410 0.89865 1.25425 0.97683 0.97216 0.96560 1.69791 1.35257 1.13808 1.36107 0.86846 0.87707 0.77883 0.75817 1.21470 1.23058 1.19619 1.21687 0.91290 0.99383 0.88119 0.91667 0.91958 0.91880 0.89938 0.92855 0.90480 0.90437 0.90157 0.90088 0.77171 0.92489 0.92110 0.92152 0.91725 0.95944 0.91608 0.92728 0.95935 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.21 60.07 0.49 0.58 16 2 N -0.51 -6.55 5.44 -232.96 -1.27 -7.82 16 3 C 0.04 0.42 6.73 -2.30 -0.02 0.41 16 4 C -0.13 -1.25 7.08 -24.59 -0.17 -1.42 16 5 C -0.13 -1.62 6.45 -24.91 -0.16 -1.78 16 6 C 0.05 0.69 3.84 -67.88 -0.26 0.43 16 7 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 8 C 0.50 8.20 4.85 -10.99 -0.05 8.15 16 9 O -0.53 -11.05 13.48 5.55 0.07 -10.98 16 10 N -0.72 -10.92 5.08 -53.69 -0.27 -11.19 16 11 C 0.12 2.27 2.60 -67.81 -0.18 2.09 16 12 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 13 C -0.12 -1.71 5.35 -26.69 -0.14 -1.85 16 14 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 15 C 0.14 2.82 6.52 -3.71 -0.02 2.80 16 16 N -0.60 -14.64 2.68 -172.32 -0.46 -15.10 16 17 C -0.26 -7.62 10.00 -15.06 -0.15 -7.78 16 18 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.03 0.93 5.28 -17.43 -0.09 0.84 16 20 N -0.91 -28.79 13.97 55.49 0.78 -28.01 16 21 Si 0.89 23.45 24.36 -169.99 -4.14 19.31 16 22 H -0.29 -7.57 6.66 56.52 0.38 -7.19 16 23 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 24 H -0.27 -6.94 6.63 56.52 0.37 -6.56 16 25 C 0.12 2.76 3.77 -3.71 -0.01 2.74 16 26 H 0.06 1.08 5.89 -51.93 -0.31 0.78 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.93 6.85 -51.93 -0.36 0.57 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.66 7.60 -51.93 -0.39 0.26 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.22 7.69 -51.92 -0.40 0.82 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.39 4.53 8.46 -40.82 -0.35 4.18 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 42 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 43 H 0.02 0.50 6.93 -51.93 -0.36 0.14 16 44 H 0.08 2.01 5.00 -51.93 -0.26 1.75 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -33.95 331.86 -8.70 -42.65 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.48 Total: 3.18 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.93 Total: 2.96 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -1.23 Total: -62.12 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.14 Total: 19.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.95 -8.70 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006917634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.484 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds