Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47442 * 110.99993 * 2 1 4 4 C 1.54311 * 107.23411 * 123.26223 * 3 2 1 5 5 C 1.55258 * 103.08543 * 22.20368 * 4 3 2 6 6 C 1.47840 * 111.00279 * 120.84651 * 2 1 3 7 7 H 1.08998 * 110.37590 * 332.57089 * 6 2 1 8 8 C 1.50700 * 110.37465 * 94.80550 * 6 2 1 9 9 O 1.21275 * 120.00028 * 17.04855 * 8 6 2 10 10 N 1.34777 * 119.99722 * 197.04369 * 8 6 2 11 11 C 1.46500 * 119.99737 * 179.97438 * 10 8 6 12 12 H 1.08997 * 109.49983 * 325.00452 * 11 10 8 13 13 C 1.53041 * 109.49999 * 204.93227 * 11 10 8 14 14 C 1.53042 * 109.53802 * 178.65135 * 13 11 10 15 15 C 1.53193 * 109.31121 * 61.37084 * 14 13 11 16 16 N 1.46917 * 108.77507 * 305.36256 * 15 14 13 17 17 C 1.36935 * 120.63197 * 233.63114 * 16 15 14 18 18 H 1.07998 * 119.99952 * 27.65398 * 17 16 15 19 19 C 1.38815 * 119.99918 * 207.66421 * 17 16 15 20 20 N 1.31614 * 120.00332 * 17.35531 * 19 17 16 21 21 Si 1.86808 * 119.99812 * 197.35895 * 19 17 16 22 22 H 1.48506 * 109.46866 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47167 * 119.99620 * 21 19 17 24 24 H 1.48494 * 109.47081 * 240.00049 * 21 19 17 25 25 C 1.46998 * 118.75901 * 53.60904 * 16 15 14 26 26 H 1.09001 * 109.46625 * 299.15038 * 1 2 3 27 27 H 1.08994 * 109.47657 * 59.15602 * 1 2 3 28 28 H 1.09005 * 109.46863 * 179.16194 * 1 2 3 29 29 H 1.08999 * 109.88753 * 242.66739 * 3 2 1 30 30 H 1.09005 * 109.88647 * 3.85637 * 3 2 1 31 31 H 1.08993 * 110.70888 * 140.67104 * 4 3 2 32 32 H 1.09002 * 110.70440 * 263.72944 * 4 3 2 33 33 H 1.09008 * 111.09062 * 206.38391 * 5 4 3 34 34 H 1.08996 * 110.94737 * 82.53402 * 5 4 3 35 35 H 0.97000 * 120.00493 * 359.97438 * 10 8 6 36 36 H 1.09000 * 109.46461 * 298.67824 * 13 11 10 37 37 H 1.09003 * 109.45393 * 58.64784 * 13 11 10 38 38 H 1.08999 * 109.49529 * 181.32136 * 14 13 11 39 39 H 1.08993 * 109.50019 * 301.41850 * 14 13 11 40 40 H 1.09006 * 109.58649 * 65.15051 * 15 14 13 41 41 H 1.09000 * 109.58581 * 185.57467 * 15 14 13 42 42 H 0.97007 * 120.00009 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.63668 * 186.61756 * 25 16 15 44 44 H 1.09008 * 109.57774 * 66.16595 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2324 5 6 3.3044 0.0436 1.5465 6 6 1.9989 -0.7077 1.1849 7 1 1.2883 -0.6519 2.0095 8 6 2.2974 -2.1457 0.8472 9 8 2.3940 -2.4889 -0.3119 10 7 2.4572 -3.0503 1.8335 11 6 2.7469 -4.4483 1.5052 12 1 2.2222 -4.7235 0.5903 13 6 2.2817 -5.3492 2.6515 14 6 2.5533 -6.8126 2.2950 15 6 4.0593 -7.0157 2.1012 16 7 4.5418 -6.0519 1.1028 17 6 5.2449 -6.4756 0.0068 18 1 5.0869 -7.4696 -0.3849 19 6 6.1609 -5.6277 -0.6005 20 7 6.6097 -4.5724 0.0455 21 14 6.7565 -5.9843 -2.3348 22 1 6.1057 -7.2210 -2.8372 23 1 6.4079 -4.8455 -3.2219 24 1 8.2297 -6.1703 -2.3237 25 6 4.2552 -4.6239 1.3021 26 1 -0.3632 0.5006 0.8975 27 1 -0.3634 0.5268 -0.8822 28 1 -0.3633 -1.0276 -0.0150 29 1 2.5697 1.5540 -0.9105 30 1 1.1755 2.0892 0.0689 31 1 3.8000 2.1034 0.9904 32 1 2.3753 1.9574 2.0684 33 1 3.5472 -0.0810 2.6019 34 1 4.1310 -0.2842 0.9161 35 1 2.3805 -2.7757 2.7606 36 1 2.8247 -5.0901 3.5605 37 1 1.2132 -5.2075 2.8140 38 1 2.2004 -7.4550 3.1017 39 1 2.0304 -7.0654 1.3727 40 1 4.5750 -6.8509 3.0473 41 1 4.2490 -8.0303 1.7511 42 1 7.2501 -3.9801 -0.3788 43 1 4.5738 -4.0605 0.4251 44 1 4.7868 -4.2642 2.1831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006917637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = -8.515490 kcal Electronic energy + Delta-G solvation = -23374.877981 eV Core-core repulsion = 20134.560174 eV Total energy + Delta-G solvation = -3240.317807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93662 -38.24504 -36.86137 -33.97482 -32.63273 -32.10174 -30.18600 -29.78222 -28.17195 -25.72372 -25.21294 -22.95078 -22.10271 -21.35190 -20.92541 -19.66665 -19.07697 -17.08586 -16.70312 -16.15662 -15.25776 -15.15247 -14.64308 -14.21355 -14.02591 -13.89935 -13.54750 -13.43190 -13.13673 -12.87436 -12.71151 -12.38769 -12.25563 -12.13340 -11.76579 -11.53720 -11.33288 -11.24708 -10.96391 -10.81931 -10.68469 -10.64109 -10.42869 -10.17792 -9.90940 -9.88178 -9.45970 -9.17488 -8.41318 -8.37195 -8.26794 -6.60169 -5.70200 -3.13055 3.16646 3.40097 3.47474 3.55113 3.56247 4.16175 4.52340 4.59640 4.63373 4.83824 5.06894 5.19781 5.28224 5.29730 5.41024 5.43570 5.46201 5.58304 5.60637 5.68296 5.72129 5.74511 5.78324 5.83886 5.97702 6.13753 6.18049 6.19081 6.38443 6.45920 6.56639 6.74820 6.82388 6.82829 6.99062 6.99849 7.08022 7.37984 7.79609 7.89349 8.09487 8.53688 8.86535 9.28675 9.92851 10.47476 11.37746 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.005528 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.355208 B = 5064.231362 C = 6093.226938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.511 5.511 3 C 0.044 3.956 4 C -0.140 4.140 5 C -0.117 4.117 6 C 0.056 3.944 7 H 0.070 0.930 8 C 0.516 3.484 9 O -0.508 6.508 10 N -0.725 5.725 11 C 0.119 3.881 12 H 0.080 0.920 13 C -0.115 4.115 14 C -0.131 4.131 15 C 0.143 3.857 16 N -0.589 5.589 17 C -0.256 4.256 18 H 0.066 0.934 19 C 0.007 3.993 20 N -0.898 5.898 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.291 1.291 25 C 0.168 3.832 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.389 0.611 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.017 0.983 41 H 0.055 0.945 42 H 0.252 0.748 43 H 0.095 0.905 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 10.344 7.603 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.235 5.235 3 C -0.083 4.083 4 C -0.179 4.179 5 C -0.155 4.155 6 C -0.056 4.056 7 H 0.088 0.912 8 C 0.299 3.701 9 O -0.381 6.381 10 N -0.377 5.377 11 C 0.013 3.987 12 H 0.098 0.902 13 C -0.153 4.153 14 C -0.171 4.171 15 C 0.016 3.984 16 N -0.312 5.312 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.542 5.542 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.218 1.218 25 C 0.041 3.959 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.221 0.779 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.108 9.930 6.188 16.133 hybrid contribution -0.037 0.487 0.382 0.620 sum -11.145 10.417 6.571 16.610 Atomic orbital electron populations 1.22535 0.87335 1.02323 1.00230 1.63048 1.07752 1.13517 1.39225 1.22854 0.97857 0.88722 0.98901 1.22802 1.00172 0.96972 0.97926 1.22684 0.96612 0.93903 1.02343 1.22530 0.97658 0.93245 0.92196 0.91200 1.20176 0.77546 0.86414 0.85957 1.90733 1.48174 1.79822 1.19363 1.46081 1.73251 1.09776 1.08611 1.21914 1.00975 0.78103 0.97662 0.90201 1.21670 0.99376 0.96210 0.98076 1.22005 0.99940 0.94672 1.00493 1.20946 0.90855 0.94103 0.92461 1.43999 1.62606 1.01410 1.23210 1.19183 1.15246 1.00475 1.03628 0.91609 1.25015 0.96589 0.98527 0.99104 1.70024 1.32026 1.16555 1.35642 0.86256 0.77858 0.77830 0.85025 1.20218 1.21380 1.21805 1.21104 0.87605 0.85937 1.01283 0.95765 0.91135 0.91346 0.90139 0.92646 0.90263 0.91449 0.90000 0.89421 0.77874 0.92344 0.93243 0.92714 0.92150 0.96475 0.92677 0.93764 0.88704 0.96633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 60.07 0.55 0.83 16 2 N -0.51 -7.23 4.68 -232.98 -1.09 -8.32 16 3 C 0.04 0.50 6.90 -2.84 -0.02 0.48 16 4 C -0.14 -1.38 6.94 -24.85 -0.17 -1.55 16 5 C -0.12 -1.45 6.50 -24.53 -0.16 -1.61 16 6 C 0.06 0.77 2.84 -67.34 -0.19 0.58 16 7 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 8 C 0.52 9.42 7.09 -10.98 -0.08 9.34 16 9 O -0.51 -12.06 16.24 5.56 0.09 -11.97 16 10 N -0.73 -12.11 5.08 -53.69 -0.27 -12.38 16 11 C 0.12 2.38 2.60 -67.80 -0.18 2.20 16 12 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 13 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 14 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 15 C 0.14 3.02 6.52 -3.72 -0.02 2.99 16 16 N -0.59 -15.29 3.00 -172.26 -0.52 -15.81 16 17 C -0.26 -7.34 9.59 -15.06 -0.14 -7.48 16 18 H 0.07 1.85 7.89 -52.49 -0.41 1.43 16 19 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 20 N -0.90 -27.22 11.19 55.49 0.62 -26.60 16 21 Si 0.90 23.00 29.59 -169.99 -5.03 17.97 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 C 0.17 4.17 4.89 -3.67 -0.02 4.15 16 26 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.51 7.58 -51.93 -0.39 0.11 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 35 H 0.39 5.04 8.60 -40.82 -0.35 4.69 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.09 2.79 6.04 -51.93 -0.31 2.48 16 44 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -34.41 345.97 -9.54 -43.94 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.73 Total: 2.38 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.83 Total: 5.57 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -1.26 Total: -63.11 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.41 -9.54 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006917637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.428 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds