Wall clock time and date at job start Tue Mar 31 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47901 * 111.00227 * 2 1 4 4 C 1.53992 * 107.05754 * 145.84022 * 3 2 1 5 5 C 1.54593 * 105.14075 * 358.77600 * 4 3 2 6 6 H 1.09004 * 110.72742 * 96.57589 * 5 4 3 7 7 C 1.50702 * 110.72642 * 219.68349 * 5 4 3 8 8 O 1.21281 * 119.99678 * 359.97438 * 7 5 4 9 9 N 1.34780 * 120.00087 * 179.97438 * 7 5 4 10 10 C 1.46493 * 119.99751 * 179.97438 * 9 7 5 11 11 H 1.08996 * 109.52646 * 35.07809 * 10 9 7 12 12 C 1.53043 * 109.49543 * 155.16439 * 10 9 7 13 13 C 1.53042 * 109.53793 * 181.31687 * 12 10 9 14 14 C 1.53633 * 109.23974 * 298.51009 * 13 12 10 15 15 N 1.46919 * 108.54447 * 54.85600 * 14 13 12 16 16 C 1.36938 * 120.63199 * 126.36467 * 15 14 13 17 17 H 1.08005 * 119.99937 * 333.18298 * 16 15 14 18 18 C 1.38813 * 120.00236 * 153.17707 * 16 15 14 19 19 N 1.31623 * 119.99750 * 334.07796 * 18 16 15 20 20 Si 1.86793 * 120.00337 * 154.07370 * 18 16 15 21 21 H 1.48500 * 109.47220 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47306 * 300.00510 * 20 18 16 23 23 H 1.48502 * 109.47087 * 60.00231 * 20 18 16 24 24 C 1.46924 * 118.73979 * 306.09318 * 15 14 13 25 25 C 1.48534 * 110.99509 * 117.39527 * 2 1 3 26 26 H 1.09004 * 109.46690 * 59.87539 * 1 2 3 27 27 H 1.08994 * 109.47333 * 179.87267 * 1 2 3 28 28 H 1.09002 * 109.46825 * 299.87779 * 1 2 3 29 29 H 1.09003 * 109.91315 * 26.48847 * 3 2 1 30 30 H 1.08993 * 109.91503 * 265.19602 * 3 2 1 31 31 H 1.08992 * 110.31058 * 239.85886 * 4 3 2 32 32 H 1.09002 * 110.30502 * 117.68832 * 4 3 2 33 33 H 0.96995 * 119.99753 * 0.02562 * 9 7 5 34 34 H 1.08996 * 109.45991 * 301.33418 * 12 10 9 35 35 H 1.08995 * 109.46284 * 61.29707 * 12 10 9 36 36 H 1.08999 * 109.49939 * 58.57957 * 13 12 10 37 37 H 1.08998 * 109.50005 * 178.65370 * 13 12 10 38 38 H 1.08999 * 109.73643 * 295.11425 * 14 13 12 39 39 H 1.09004 * 109.66211 * 174.54915 * 14 13 12 40 40 H 0.97003 * 120.00248 * 354.36456 * 19 18 16 41 41 H 1.09004 * 109.58822 * 173.64786 * 24 15 14 42 42 H 1.08999 * 109.58592 * 293.93256 * 24 15 14 43 43 H 1.09005 * 110.66337 * 81.84544 * 25 2 1 44 44 H 1.08990 * 110.67006 * 318.71351 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 3.2983 1.3659 0.8266 5 6 3.4491 -0.0930 1.3155 6 1 4.1140 -0.6533 0.6581 7 6 3.9511 -0.1303 2.7360 8 8 4.1764 0.9047 3.3268 9 7 4.1498 -1.3137 3.3497 10 6 4.6382 -1.3498 4.7303 11 1 4.2221 -0.5097 5.2861 12 6 4.2082 -2.6621 5.3900 13 6 4.6899 -2.6866 6.8425 14 6 6.2242 -2.6129 6.8683 15 7 6.6478 -1.4265 6.1125 16 6 7.4791 -0.4978 6.6799 17 1 7.4920 -0.3682 7.7520 18 6 8.3052 0.2768 5.8770 19 7 8.6891 -0.1724 4.7009 20 14 8.8718 1.9565 6.4657 21 1 9.7383 2.5771 5.4317 22 1 7.6891 2.8223 6.7045 23 1 9.6379 1.8058 7.7289 24 6 6.1675 -1.2582 4.7342 25 6 2.0013 -0.6381 1.2312 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3634 -1.0276 -0.0023 28 1 -0.3633 0.5119 0.8911 29 1 1.2759 2.0561 0.4571 30 1 2.2123 1.6966 -1.0211 31 1 3.2137 2.0428 1.6766 32 1 4.1471 1.6453 0.2024 33 1 3.9699 -2.1413 2.8770 34 1 3.1214 -2.7412 5.3665 35 1 4.6450 -3.5011 4.8484 36 1 4.2732 -1.8338 7.3784 37 1 4.3627 -3.6109 7.3187 38 1 6.6435 -3.5080 6.4088 39 1 6.5702 -2.5325 7.8989 40 1 8.4633 -1.0759 4.4294 41 1 6.4761 -0.2836 4.3561 42 1 6.5843 -2.0435 4.1036 43 1 2.0040 -1.7235 1.1315 44 1 1.4237 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009510582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:13 Heat of formation + Delta-G solvation = -16.239208 kcal Electronic energy + Delta-G solvation = -23148.044634 eV Core-core repulsion = 19907.391901 eV Total energy + Delta-G solvation = -3240.652732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12134 -38.44544 -37.23135 -34.28513 -32.88413 -32.33359 -29.98794 -29.59053 -28.39007 -25.98979 -25.10299 -23.06700 -22.04830 -21.52601 -20.99752 -19.79706 -19.15475 -17.36949 -17.21636 -16.27467 -15.51651 -15.02780 -14.93909 -14.42207 -14.17276 -13.98621 -13.79415 -13.43810 -13.37321 -13.22891 -12.94730 -12.62475 -12.29014 -12.00217 -11.78747 -11.69600 -11.47235 -11.29011 -11.10819 -10.87728 -10.72497 -10.62087 -10.36167 -10.24453 -10.01327 -9.84770 -9.45711 -9.33609 -8.71046 -8.63084 -8.29981 -6.85718 -6.03148 -3.17869 2.93940 3.38735 3.54477 3.62491 3.77585 3.88270 4.43342 4.51254 4.66058 4.86934 5.03574 5.12293 5.19627 5.21941 5.25120 5.33014 5.36708 5.42313 5.48607 5.57162 5.58959 5.60885 5.70357 5.78119 5.94625 6.04109 6.05879 6.11717 6.18178 6.30853 6.35333 6.56389 6.59595 6.68200 6.73337 6.77178 6.85467 7.03945 7.30128 7.84732 8.04860 8.57213 8.62594 9.14319 9.88729 10.31284 11.25446 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.004853 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.201931 B = 5768.712176 C = 6884.525148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.119 4.119 5 C -0.113 4.113 6 H 0.108 0.892 7 C 0.517 3.483 8 O -0.528 6.528 9 N -0.721 5.721 10 C 0.123 3.877 11 H 0.084 0.916 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.144 3.856 15 N -0.595 5.595 16 C -0.355 4.355 17 H 0.057 0.943 18 C -0.019 4.019 19 N -0.911 5.911 20 Si 1.062 2.938 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.146 3.854 25 C 0.047 3.953 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.393 0.607 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.087 0.913 42 H 0.015 0.985 43 H 0.088 0.912 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 -3.768 -7.967 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.158 4.158 5 C -0.135 4.135 6 H 0.126 0.874 7 C 0.301 3.699 8 O -0.404 6.404 9 N -0.372 5.372 10 C 0.017 3.983 11 H 0.102 0.898 12 C -0.153 4.153 13 C -0.171 4.171 14 C 0.018 3.982 15 N -0.319 5.319 16 C -0.483 4.483 17 H 0.075 0.925 18 C -0.221 4.221 19 N -0.551 5.551 20 Si 0.892 3.108 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.220 1.220 24 C 0.019 3.981 25 C -0.081 4.081 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.226 0.774 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.033 0.967 43 H 0.106 0.894 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.384 -1.902 -8.406 16.768 hybrid contribution -1.281 -1.489 0.936 2.176 sum -15.665 -3.390 -7.470 17.683 Atomic orbital electron populations 1.22526 0.87787 1.02204 1.00854 1.64762 1.08180 1.15430 1.36198 1.22931 0.96052 0.89506 1.00776 1.22365 0.97423 0.95520 1.00463 1.22229 0.97514 0.99228 0.94547 0.87393 1.20298 0.77719 0.83942 0.87929 1.90739 1.50621 1.32754 1.66273 1.46099 1.67568 1.07846 1.15666 1.21803 0.98048 0.98063 0.80342 0.89825 1.21667 0.99419 0.97026 0.97232 1.22071 0.99254 1.00735 0.95033 1.21032 0.91152 0.89671 0.96327 1.44060 1.54402 1.21757 1.11718 1.19941 1.18573 1.16492 0.93327 0.92503 1.25816 0.94768 1.04905 0.96656 1.70794 1.42129 1.19063 1.23077 0.83579 0.76055 0.76182 0.75024 1.21056 1.21909 1.22000 1.21268 0.88699 1.01369 0.86778 1.23169 0.93257 0.99989 0.91656 0.91218 0.91214 0.95289 0.93551 0.90078 0.89212 0.90333 0.77392 0.92883 0.92248 0.92029 0.92533 0.96538 0.92466 0.92215 0.89498 0.96739 0.89387 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 60.07 0.56 0.69 16 2 N -0.52 -5.49 5.55 -238.71 -1.33 -6.81 16 3 C 0.04 0.37 6.70 -2.76 -0.02 0.35 16 4 C -0.12 -1.53 6.33 -25.38 -0.16 -1.69 16 5 C -0.11 -1.46 3.45 -89.91 -0.31 -1.77 16 6 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 7 C 0.52 8.82 7.10 -10.98 -0.08 8.75 16 8 O -0.53 -11.66 15.10 5.56 0.08 -11.58 16 9 N -0.72 -11.41 5.08 -53.69 -0.27 -11.68 16 10 C 0.12 2.37 2.60 -67.81 -0.18 2.19 16 11 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 12 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16 13 C -0.13 -2.23 6.10 -26.38 -0.16 -2.39 16 14 C 0.14 3.03 6.54 -3.48 -0.02 3.01 16 15 N -0.60 -15.27 2.86 -172.05 -0.49 -15.77 16 16 C -0.35 -10.23 9.49 -15.06 -0.14 -10.37 16 17 H 0.06 1.64 7.95 -52.48 -0.42 1.22 16 18 C -0.02 -0.56 4.67 -17.43 -0.08 -0.64 16 19 N -0.91 -28.19 12.38 55.49 0.69 -27.50 16 20 Si 1.06 26.55 29.99 -169.99 -5.10 21.45 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.15 3.53 4.27 -3.71 -0.02 3.51 16 25 C 0.05 0.51 5.99 -1.90 -0.01 0.50 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.25 8.00 -51.93 -0.42 -0.17 16 29 H 0.05 0.47 7.73 -51.93 -0.40 0.07 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.34 6.85 -51.93 -0.36 0.99 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.39 4.80 8.60 -40.82 -0.35 4.45 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.27 8.29 6.74 -40.82 -0.28 8.02 16 41 H 0.09 2.50 6.24 -51.93 -0.32 2.17 16 42 H 0.01 0.36 7.88 -51.93 -0.41 -0.05 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.58 7.86 -51.93 -0.41 0.17 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -33.86 343.21 -9.61 -43.47 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.61 Total: 3.07 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.76 Total: 0.17 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -1.40 Total: -61.76 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -5.10 Total: 21.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.86 -9.61 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009510582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.233 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds