Wall clock time and date at job start Tue Mar 31 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47840 * 111.00585 * 2 1 4 4 C 1.54901 * 104.79892 * 146.35964 * 3 2 1 5 5 C 1.55133 * 101.65517 * 322.93205 * 4 3 2 6 6 H 1.08999 * 110.85716 * 277.20116 * 5 4 3 7 7 C 1.50704 * 110.70785 * 154.03616 * 5 4 3 8 8 O 1.21273 * 119.99764 * 4.94462 * 7 5 4 9 9 N 1.34778 * 119.99835 * 184.94809 * 7 5 4 10 10 C 1.46501 * 119.99679 * 179.97438 * 9 7 5 11 11 H 1.08998 * 109.49810 * 324.93685 * 10 9 7 12 12 C 1.53104 * 109.51366 * 204.87066 * 10 9 7 13 13 C 1.53048 * 109.50266 * 178.68489 * 12 10 9 14 14 C 1.53194 * 109.33734 * 61.34917 * 13 12 10 15 15 N 1.46928 * 108.77525 * 305.34999 * 14 13 12 16 16 C 1.36933 * 120.62837 * 233.58988 * 15 14 13 17 17 H 1.08003 * 120.00239 * 152.62968 * 16 15 14 18 18 C 1.38810 * 120.00091 * 332.62877 * 16 15 14 19 19 N 1.31615 * 120.00392 * 159.34908 * 18 16 15 20 20 Si 1.86808 * 120.00049 * 339.34533 * 18 16 15 21 21 H 1.48497 * 109.46971 * 92.94029 * 20 18 16 22 22 H 1.48500 * 109.47031 * 212.94548 * 20 18 16 23 23 H 1.48504 * 109.46985 * 332.94376 * 20 18 16 24 24 C 1.46926 * 118.73932 * 53.60529 * 15 14 13 25 25 C 1.47446 * 110.99781 * 120.84276 * 2 1 3 26 26 H 1.09003 * 109.47613 * 299.16107 * 1 2 3 27 27 H 1.09007 * 109.46661 * 59.15621 * 1 2 3 28 28 H 1.08993 * 109.47663 * 179.15696 * 1 2 3 29 29 H 1.09002 * 110.37429 * 265.19588 * 3 2 1 30 30 H 1.09001 * 110.37304 * 27.53249 * 3 2 1 31 31 H 1.09002 * 110.99067 * 204.83656 * 4 3 2 32 32 H 1.09008 * 110.98998 * 81.02567 * 4 3 2 33 33 H 0.96996 * 120.00520 * 0.02562 * 9 7 5 34 34 H 1.08997 * 109.50647 * 58.66255 * 12 10 9 35 35 H 1.09005 * 109.45039 * 298.67900 * 12 10 9 36 36 H 1.08996 * 109.49509 * 301.37831 * 13 12 10 37 37 H 1.08996 * 109.49539 * 181.31575 * 13 12 10 38 38 H 1.09004 * 109.58693 * 65.13202 * 14 13 12 39 39 H 1.08999 * 109.58302 * 185.42032 * 14 13 12 40 40 H 0.97003 * 120.00375 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.58253 * 66.18210 * 24 15 14 42 42 H 1.08996 * 109.58508 * 186.45938 * 24 15 14 43 43 H 1.09001 * 109.88918 * 117.33592 * 25 2 1 44 44 H 1.09007 * 109.88752 * 356.14734 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9989 1.3801 0.0000 4 6 3.3047 1.3026 0.8297 5 6 2.9158 0.2821 1.9315 6 1 2.3752 0.7724 2.7411 7 6 4.1382 -0.4232 2.4601 8 8 5.2412 -0.0919 2.0799 9 7 4.0056 -1.4220 3.3552 10 6 5.1940 -2.1080 3.8686 11 1 5.9435 -2.1766 3.0801 12 6 4.8111 -3.5156 4.3333 13 6 6.0587 -4.2437 4.8392 14 6 6.6415 -3.4815 6.0334 15 7 6.8772 -2.0871 5.6351 16 6 8.1082 -1.5117 5.8045 17 1 8.4221 -0.7070 5.1561 18 6 8.9527 -1.9626 6.8097 19 7 10.2454 -1.7261 6.7386 20 14 8.2543 -2.9051 8.2635 21 1 8.3169 -4.3623 7.9849 22 1 9.0492 -2.5989 9.4799 23 1 6.8414 -2.5030 8.4814 24 6 5.7670 -1.3217 5.0517 25 6 1.9973 -0.7057 1.1819 26 1 -0.3634 0.5007 0.8974 27 1 -0.3633 0.5269 -0.8824 28 1 -0.3634 -1.0274 -0.0151 29 1 2.2148 1.7037 -1.0182 30 1 1.2890 2.0592 0.4723 31 1 3.5495 2.2719 1.2640 32 1 4.1302 0.9280 0.2243 33 1 3.1235 -1.6873 3.6589 34 1 4.3805 -4.0698 3.4993 35 1 4.0799 -3.4456 5.1387 36 1 6.8000 -4.2922 4.0416 37 1 5.7901 -5.2538 5.1483 38 1 5.9365 -3.5099 6.8644 39 1 7.5822 -3.9412 6.3364 40 1 10.8356 -2.0415 7.4409 41 1 4.9908 -1.1740 5.8026 42 1 6.1315 -0.3537 4.7078 43 1 2.5696 -1.5785 0.8675 44 1 1.1753 -1.0120 1.8291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009510585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:15 Heat of formation + Delta-G solvation = -8.320656 kcal Electronic energy + Delta-G solvation = -22872.662233 eV Core-core repulsion = 19632.352875 eV Total energy + Delta-G solvation = -3240.309358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29782 -38.61344 -37.40812 -34.44765 -32.65330 -32.26920 -30.83534 -29.94415 -28.59100 -26.12067 -25.30680 -23.35849 -21.99782 -21.72589 -21.24910 -20.00984 -19.47557 -17.34170 -16.80072 -16.40155 -15.82356 -15.43332 -14.96102 -14.84966 -14.31918 -13.93981 -13.80356 -13.73146 -13.59534 -13.23254 -12.87194 -12.70342 -12.38384 -12.14923 -12.05404 -11.94575 -11.54193 -11.52082 -11.43055 -11.13104 -11.01799 -10.89933 -10.75371 -10.16229 -9.98109 -9.75468 -9.61175 -9.43903 -8.98453 -8.67629 -8.51207 -6.96032 -5.91511 -3.28120 2.77144 3.26008 3.32294 3.48716 3.51613 3.68203 4.22487 4.41243 4.54682 4.68312 4.98214 4.99112 5.00480 5.05969 5.08013 5.16618 5.24711 5.27807 5.29786 5.43423 5.51560 5.52252 5.58101 5.72840 5.78154 5.82667 5.94976 6.03581 6.08097 6.19658 6.30883 6.42760 6.54593 6.57583 6.62413 6.65017 6.69779 6.78762 6.94345 7.67408 7.98857 8.36075 8.41641 8.97107 9.74523 10.10284 11.24484 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.003766 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.699670 B = 7432.520341 C = 7923.238203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.040 3.960 4 C -0.109 4.109 5 C -0.133 4.133 6 H 0.100 0.900 7 C 0.521 3.479 8 O -0.528 6.528 9 N -0.723 5.723 10 C 0.124 3.876 11 H 0.090 0.910 12 C -0.115 4.115 13 C -0.132 4.132 14 C 0.122 3.878 15 N -0.601 5.601 16 C -0.259 4.259 17 H 0.087 0.913 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.272 1.272 24 C 0.145 3.855 25 C 0.053 3.947 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.394 0.606 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.262 0.738 41 H 0.021 0.979 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.672 0.829 -10.040 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.156 4.156 6 H 0.118 0.882 7 C 0.306 3.694 8 O -0.403 6.403 9 N -0.374 5.374 10 C 0.019 3.981 11 H 0.108 0.892 12 C -0.154 4.154 13 C -0.172 4.172 14 C -0.004 4.004 15 N -0.325 5.325 16 C -0.387 4.387 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.197 1.197 24 C 0.018 3.982 25 C -0.075 4.075 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.227 0.773 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.524 0.823 -10.691 23.156 hybrid contribution -1.104 -0.297 1.890 2.209 sum -21.628 0.525 -8.802 23.356 Atomic orbital electron populations 1.22563 0.87550 1.02157 1.00690 1.63573 1.07966 1.14763 1.39486 1.23127 0.95617 0.89052 1.00977 1.22601 0.97837 0.98684 0.95573 1.22605 0.95704 0.97799 0.99483 0.88160 1.20212 0.90371 0.80018 0.78840 1.90754 1.27155 1.64028 1.58354 1.46116 1.10155 1.36536 1.44583 1.21706 0.86578 0.91694 0.98112 0.89175 1.21684 0.98575 0.94980 1.00113 1.21999 0.96802 0.97991 1.00391 1.21395 0.99240 0.85594 0.94124 1.44287 1.08639 1.06975 1.72622 1.18956 0.89361 1.18385 1.12002 0.89582 1.25268 0.95317 0.98914 0.98043 1.69843 1.02106 1.48942 1.34168 0.86944 0.79043 0.78950 0.83686 1.21602 1.23168 1.19676 1.21204 0.90068 0.94928 0.92009 1.22814 0.97278 0.97080 0.90344 0.95407 0.91277 0.91287 0.89766 0.93398 0.90148 0.89046 0.77305 0.92419 0.92177 0.91372 0.92253 0.95705 0.90759 0.92770 0.96129 0.91499 0.89838 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.12 60.06 0.55 0.68 16 2 N -0.53 -4.94 5.44 -239.52 -1.30 -6.25 16 3 C 0.04 0.34 6.73 -2.30 -0.02 0.33 16 4 C -0.11 -1.15 6.13 -24.60 -0.15 -1.30 16 5 C -0.13 -1.38 3.34 -89.95 -0.30 -1.68 16 6 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 7 C 0.52 7.50 6.98 -10.98 -0.08 7.42 16 8 O -0.53 -10.19 15.43 5.56 0.09 -10.10 16 9 N -0.72 -9.51 5.03 -53.66 -0.27 -9.78 16 10 C 0.12 2.10 2.60 -67.78 -0.18 1.92 16 11 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 12 C -0.12 -1.68 5.36 -26.65 -0.14 -1.82 16 13 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 14 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 15 N -0.60 -14.66 2.77 -172.32 -0.48 -15.14 16 16 C -0.26 -7.49 10.03 -15.06 -0.15 -7.64 16 17 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 18 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 19 N -0.91 -28.42 13.97 55.49 0.78 -27.64 16 20 Si 0.88 22.57 24.35 -169.99 -4.14 18.43 16 21 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 22 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 23 H -0.27 -6.79 6.64 56.52 0.38 -6.42 16 24 C 0.15 3.00 6.09 -3.71 -0.02 2.98 16 25 C 0.05 0.48 6.43 -2.83 -0.02 0.46 16 26 H 0.03 0.18 8.10 -51.93 -0.42 -0.25 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.36 7.78 -51.93 -0.40 -0.05 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.17 7.49 -51.92 -0.39 0.78 16 33 H 0.39 3.82 8.59 -40.82 -0.35 3.47 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 39 H 0.07 1.77 4.50 -51.93 -0.23 1.54 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 1.52 7.93 -51.93 -0.41 1.11 16 43 H 0.08 0.86 7.81 -51.93 -0.41 0.46 16 44 H 0.06 0.44 7.58 -51.93 -0.39 0.05 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -33.77 337.90 -8.62 -42.39 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.61 Total: 0.86 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.78 Total: 2.14 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -1.28 Total: -58.81 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.77 -8.62 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009510585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.071 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds