Wall clock time and date at job start Tue Mar 31 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47892 * 111.01576 * 2 1 4 4 C 1.54903 * 104.77403 * 146.33677 * 3 2 1 5 5 C 1.55146 * 101.68789 * 322.98006 * 4 3 2 6 6 H 1.08996 * 110.70703 * 277.25468 * 5 4 3 7 7 C 1.50694 * 110.70762 * 154.01783 * 5 4 3 8 8 O 1.21282 * 119.99958 * 0.02562 * 7 5 4 9 9 N 1.34773 * 120.00255 * 179.97438 * 7 5 4 10 10 C 1.46505 * 120.00553 * 179.97438 * 9 7 5 11 11 H 1.09005 * 109.49322 * 34.94100 * 10 9 7 12 12 C 1.53038 * 109.49871 * 155.00324 * 10 9 7 13 13 C 1.53045 * 109.53708 * 181.32024 * 12 10 9 14 14 C 1.53191 * 109.30951 * 298.63485 * 13 12 10 15 15 N 1.46923 * 108.77544 * 54.63720 * 14 13 12 16 16 C 1.36936 * 120.63079 * 126.41488 * 15 14 13 17 17 H 1.07998 * 119.99975 * 207.67490 * 16 15 14 18 18 C 1.38810 * 120.00109 * 27.66964 * 16 15 14 19 19 N 1.31618 * 120.00036 * 17.35546 * 18 16 15 20 20 Si 1.86808 * 119.99891 * 197.36141 * 18 16 15 21 21 H 1.48499 * 109.46999 * 90.00031 * 20 18 16 22 22 H 1.48504 * 109.46649 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.46901 * 329.99696 * 20 18 16 24 24 C 1.46923 * 118.73795 * 306.38785 * 15 14 13 25 25 C 1.47437 * 111.00335 * 120.88101 * 2 1 3 26 26 H 1.09007 * 109.46937 * 299.12201 * 1 2 3 27 27 H 1.09001 * 109.47399 * 59.11666 * 1 2 3 28 28 H 1.08998 * 109.46993 * 179.12327 * 1 2 3 29 29 H 1.08995 * 110.35664 * 27.52461 * 3 2 1 30 30 H 1.09002 * 110.41273 * 265.16849 * 3 2 1 31 31 H 1.08996 * 110.98884 * 204.87291 * 4 3 2 32 32 H 1.09002 * 110.99420 * 81.09131 * 4 3 2 33 33 H 0.97000 * 120.00056 * 0.02562 * 9 7 5 34 34 H 1.09001 * 109.45930 * 301.33756 * 12 10 9 35 35 H 1.08996 * 109.45870 * 61.29866 * 12 10 9 36 36 H 1.09002 * 109.49409 * 58.58646 * 13 12 10 37 37 H 1.08992 * 109.49594 * 178.64967 * 13 12 10 38 38 H 1.08998 * 109.58117 * 174.42374 * 14 13 12 39 39 H 1.09001 * 109.58735 * 294.84836 * 14 13 12 40 40 H 0.97002 * 120.00117 * 179.97438 * 19 18 16 41 41 H 1.09008 * 109.58740 * 293.82044 * 24 15 14 42 42 H 1.09004 * 109.58470 * 173.39978 * 24 15 14 43 43 H 1.08999 * 109.88864 * 117.33827 * 25 2 1 44 44 H 1.09000 * 109.89111 * 356.14887 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9993 1.3805 0.0000 4 6 3.3047 1.3022 0.8303 5 6 2.9159 0.2809 1.9315 6 1 2.3746 0.7728 2.7396 7 6 4.1384 -0.4247 2.4594 8 8 5.2338 -0.1550 2.0142 9 7 4.0145 -1.3546 3.4270 10 6 5.2029 -2.0410 3.9399 11 1 6.0463 -1.3505 3.9488 12 6 4.9328 -2.5358 5.3626 13 6 6.1847 -3.2241 5.9114 14 6 6.5231 -4.4340 5.0348 15 7 6.6418 -3.9887 3.6397 16 6 7.7669 -4.2690 2.9112 17 1 8.0649 -3.6153 2.1049 18 6 8.5244 -5.3934 3.2091 19 7 8.0077 -6.3613 3.9361 20 14 10.2773 -5.5327 2.5784 21 1 11.2097 -4.9462 3.5742 22 1 10.6148 -6.9633 2.3666 23 1 10.4004 -4.7995 1.2929 24 6 5.5302 -3.2374 3.0410 25 6 1.9974 -0.7065 1.1813 26 1 -0.3633 0.5002 0.8978 27 1 -0.3634 0.5275 -0.8819 28 1 -0.3633 -1.0275 -0.0157 29 1 1.2894 2.0595 0.4722 30 1 2.2160 1.7046 -1.0179 31 1 3.5495 2.2712 1.2653 32 1 4.1306 0.9284 0.2251 33 1 3.1385 -1.5701 3.7834 34 1 4.6756 -1.6890 5.9989 35 1 4.1049 -3.2446 5.3495 36 1 7.0192 -2.5229 5.9017 37 1 5.9996 -3.5550 6.9333 38 1 7.4678 -4.8689 5.3612 39 1 5.7294 -5.1768 5.1150 40 1 8.5370 -7.1472 4.1440 41 1 4.6555 -3.8827 2.9585 42 1 5.8197 -2.8829 2.0517 43 1 2.5697 -1.5790 0.8663 44 1 1.1756 -1.0132 1.8283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009510588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:18 Heat of formation + Delta-G solvation = -14.411417 kcal Electronic energy + Delta-G solvation = -22881.350626 eV Core-core repulsion = 19640.777153 eV Total energy + Delta-G solvation = -3240.573473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21727 -38.47154 -37.15510 -34.29427 -32.58632 -32.15890 -30.44551 -29.68248 -28.24110 -26.02418 -25.26278 -23.03377 -22.09604 -21.40106 -21.16255 -19.87756 -19.21856 -17.24493 -16.77122 -16.30627 -15.68520 -15.11819 -14.72919 -14.61982 -14.22943 -13.92689 -13.65947 -13.59713 -13.36402 -13.15716 -12.58704 -12.41958 -12.37405 -12.09173 -11.88070 -11.81615 -11.43540 -11.36957 -11.05590 -10.97758 -10.85753 -10.78072 -10.24725 -10.19904 -9.90492 -9.88241 -9.61452 -9.42725 -8.79897 -8.59112 -8.37598 -6.65204 -5.75787 -3.17837 2.82247 3.34804 3.42611 3.48952 3.52028 3.75704 4.29393 4.47505 4.55536 4.74794 5.04247 5.06208 5.11928 5.13055 5.23951 5.31989 5.34903 5.40506 5.55235 5.59000 5.62873 5.65615 5.73395 5.76912 5.85556 6.09605 6.13255 6.17678 6.25205 6.54054 6.62303 6.65222 6.70100 6.71050 6.77880 6.86004 7.01937 7.37420 7.66198 7.76499 7.86166 8.44641 8.50876 9.24959 9.87233 10.42755 11.32943 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023319 B = 0.003930 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.429613 B = 7123.018401 C = 7590.850602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.040 3.960 4 C -0.110 4.110 5 C -0.133 4.133 6 H 0.097 0.903 7 C 0.521 3.479 8 O -0.532 6.532 9 N -0.722 5.722 10 C 0.125 3.875 11 H 0.085 0.915 12 C -0.114 4.114 13 C -0.140 4.140 14 C 0.167 3.833 15 N -0.588 5.588 16 C -0.250 4.250 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.143 3.857 25 C 0.053 3.947 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.393 0.607 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.019 0.981 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 13.312 -0.736 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.087 4.087 4 C -0.148 4.148 5 C -0.156 4.156 6 H 0.115 0.885 7 C 0.305 3.695 8 O -0.407 6.407 9 N -0.372 5.372 10 C 0.020 3.980 11 H 0.103 0.897 12 C -0.152 4.152 13 C -0.180 4.180 14 C 0.042 3.958 15 N -0.311 5.311 16 C -0.380 4.380 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.549 5.549 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.203 1.203 24 C 0.015 3.985 25 C -0.075 4.075 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.226 0.774 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.772 13.069 -1.490 19.780 hybrid contribution 0.022 0.124 0.739 0.750 sum -14.750 13.193 -0.751 19.803 Atomic orbital electron populations 1.22562 0.87561 1.02239 1.00553 1.63565 1.07932 1.14583 1.39650 1.23122 0.95517 0.89136 1.00925 1.22613 0.98071 0.98380 0.95732 1.22591 0.95785 0.97813 0.99364 0.88492 1.20189 0.90223 0.79620 0.79442 1.90732 1.27726 1.64466 1.57818 1.46163 1.10910 1.40456 1.39686 1.21747 0.86797 0.95415 0.94062 0.89675 1.21673 0.99433 0.99322 0.94819 1.22182 0.96265 1.00533 0.98975 1.20839 1.01422 0.90904 0.82666 1.44003 1.15275 1.63238 1.08547 1.19250 0.99909 1.04473 1.14348 0.91514 1.25015 0.99502 0.94728 1.00351 1.70041 1.35357 1.07042 1.42471 0.86268 0.84984 0.76735 0.78727 1.21421 1.21780 1.20334 1.21177 0.91211 0.90727 0.95360 1.22810 0.97243 0.97147 0.90270 0.95513 0.91314 0.91199 0.93525 0.89799 0.90423 0.88857 0.77357 0.93198 0.92281 0.92448 0.92752 0.89258 0.96336 0.93682 0.96529 0.92406 0.89540 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.06 0.55 0.70 16 2 N -0.53 -5.51 5.44 -239.49 -1.30 -6.81 16 3 C 0.04 0.37 6.73 -2.27 -0.02 0.36 16 4 C -0.11 -1.20 6.17 -24.59 -0.15 -1.35 16 5 C -0.13 -1.45 3.34 -89.95 -0.30 -1.75 16 6 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.52 7.83 6.96 -10.99 -0.08 7.75 16 8 O -0.53 -10.48 15.36 5.56 0.09 -10.40 16 9 N -0.72 -10.20 5.08 -53.69 -0.27 -10.47 16 10 C 0.13 2.25 2.61 -67.81 -0.18 2.07 16 11 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 12 C -0.11 -1.84 5.35 -26.69 -0.14 -1.98 16 13 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 14 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 15 N -0.59 -15.13 2.99 -172.33 -0.52 -15.64 16 16 C -0.25 -7.14 9.59 -15.06 -0.14 -7.28 16 17 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 20 Si 0.90 22.31 29.59 -169.99 -5.03 17.28 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.14 3.15 6.09 -3.72 -0.02 3.13 16 25 C 0.05 0.56 6.48 -2.84 -0.02 0.54 16 26 H 0.03 0.19 8.11 -51.92 -0.42 -0.24 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.36 7.78 -51.93 -0.40 -0.04 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.26 7.40 -51.93 -0.38 0.88 16 33 H 0.39 4.25 8.60 -40.82 -0.35 3.90 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 42 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 43 H 0.09 1.08 7.81 -51.93 -0.41 0.68 16 44 H 0.06 0.52 7.58 -51.93 -0.39 0.13 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -32.41 344.31 -9.67 -42.08 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.68 Total: 1.32 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.77 Total: 3.35 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -1.47 Total: -58.82 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.41 -9.67 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009510588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.667 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds