Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48541 * 110.99400 * 2 1 4 4 C 1.54943 * 103.22383 * 200.28148 * 3 2 1 5 5 C 1.54597 * 102.92066 * 37.40996 * 4 3 2 6 6 H 1.09000 * 110.38847 * 97.00906 * 5 4 3 7 7 C 1.50700 * 110.30546 * 219.12641 * 5 4 3 8 8 O 1.21276 * 120.00516 * 357.17361 * 7 5 4 9 9 N 1.34777 * 119.99702 * 177.17210 * 7 5 4 10 10 C 1.46501 * 120.00136 * 180.02562 * 9 7 5 11 11 H 1.09001 * 109.49454 * 324.99818 * 10 9 7 12 12 C 1.53043 * 109.50058 * 204.93800 * 10 9 7 13 13 C 1.53036 * 109.53743 * 178.65094 * 12 10 9 14 14 C 1.53189 * 109.31463 * 61.36328 * 13 12 10 15 15 N 1.46921 * 108.77587 * 305.36375 * 14 13 12 16 16 C 1.36934 * 120.63047 * 233.63119 * 15 14 13 17 17 H 1.08003 * 120.00338 * 27.67480 * 16 15 14 18 18 C 1.38822 * 120.00137 * 207.67903 * 16 15 14 19 19 N 1.31615 * 119.99603 * 17.34873 * 18 16 15 20 20 Si 1.86803 * 119.99991 * 197.35289 * 18 16 15 21 21 H 1.48498 * 109.47219 * 89.99572 * 20 18 16 22 22 H 1.48496 * 109.46845 * 209.99626 * 20 18 16 23 23 H 1.48499 * 109.46921 * 329.99636 * 20 18 16 24 24 C 1.46927 * 118.74219 * 53.60727 * 15 14 13 25 25 C 1.47896 * 111.00140 * 242.60656 * 2 1 3 26 26 H 1.09004 * 109.46819 * 177.40059 * 1 2 3 27 27 H 1.09003 * 109.47424 * 297.39389 * 1 2 3 28 28 H 1.08995 * 109.47436 * 57.39788 * 1 2 3 29 29 H 1.08997 * 110.66379 * 318.71048 * 3 2 1 30 30 H 1.08991 * 110.66800 * 81.84395 * 3 2 1 31 31 H 1.09004 * 110.71789 * 279.05843 * 4 3 2 32 32 H 1.08998 * 110.72343 * 155.77317 * 4 3 2 33 33 H 0.97003 * 120.00363 * 0.02562 * 9 7 5 34 34 H 1.08999 * 109.45638 * 298.67034 * 12 10 9 35 35 H 1.09002 * 109.45914 * 58.64001 * 12 10 9 36 36 H 1.09005 * 109.49337 * 181.31866 * 13 12 10 37 37 H 1.09003 * 109.49638 * 301.41096 * 13 12 10 38 38 H 1.09000 * 109.58246 * 65.15336 * 14 13 12 39 39 H 1.09002 * 109.58541 * 185.43137 * 14 13 12 40 40 H 0.97006 * 119.99566 * 180.02562 * 19 18 16 41 41 H 1.08990 * 109.59056 * 186.60205 * 24 15 14 42 42 H 1.09002 * 109.58676 * 66.17713 * 24 15 14 43 43 H 1.08992 * 109.91922 * 26.48263 * 25 2 1 44 44 H 1.09003 * 109.91359 * 265.19307 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3868 0.0000 4 6 3.4491 1.2108 -0.5228 5 6 3.2982 0.1054 -1.5931 6 1 3.2142 0.5472 -2.5860 7 6 4.4717 -0.8385 -1.5390 8 8 5.3807 -0.6322 -0.7632 9 7 4.5110 -1.9120 -2.3529 10 6 5.6515 -2.8300 -2.3001 11 1 6.5618 -2.2676 -2.0921 12 6 5.7912 -3.5491 -3.6438 13 6 7.0025 -4.4834 -3.6008 14 6 6.7916 -5.5365 -2.5084 15 7 6.5125 -4.8517 -1.2389 16 6 7.2518 -5.1279 -0.1199 17 1 8.2713 -5.4706 -0.2172 18 6 6.6907 -4.9676 1.1397 19 7 5.3837 -4.8875 1.2726 20 14 7.7908 -4.8655 2.6461 21 1 8.1527 -3.4478 2.8995 22 1 7.0690 -5.4103 3.8239 23 1 9.0251 -5.6573 2.4121 24 6 5.4253 -3.8644 -1.1929 25 6 1.9990 -0.6353 -1.2259 26 1 -0.3633 -1.0267 -0.0466 27 1 -0.3634 0.4728 0.9124 28 1 -0.3634 0.5537 -0.8657 29 1 1.4236 2.0204 -0.6730 30 1 2.0039 1.7978 1.0094 31 1 4.1114 0.8838 0.2787 32 1 3.8121 2.1354 -0.9717 33 1 3.7841 -2.0769 -2.9737 34 1 4.8906 -4.1310 -3.8395 35 1 5.9279 -2.8138 -4.4367 36 1 7.1152 -4.9776 -4.5658 37 1 7.9001 -3.9055 -3.3805 38 1 5.9478 -6.1736 -2.7732 39 1 7.6910 -6.1442 -2.4082 40 1 4.9917 -4.7751 2.1528 41 1 5.4240 -3.3672 -0.2230 42 1 4.4700 -4.3651 -1.3504 43 1 1.2759 -0.5403 -2.0358 44 1 2.2123 -1.6873 -1.0364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009510590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = -12.042298 kcal Electronic energy + Delta-G solvation = -23317.722465 eV Core-core repulsion = 20077.251724 eV Total energy + Delta-G solvation = -3240.470741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02603 -38.25485 -37.02977 -34.07162 -32.67007 -32.22207 -30.05443 -29.54594 -28.20104 -25.84076 -25.21495 -22.84909 -22.09411 -21.33828 -21.02704 -19.63378 -19.10147 -17.05147 -16.71229 -16.10395 -15.60959 -15.13429 -14.71645 -14.28727 -14.09843 -13.96879 -13.64433 -13.38844 -13.10984 -12.93422 -12.41948 -12.28991 -12.24882 -12.03865 -11.81855 -11.59055 -11.39892 -11.17245 -10.96491 -10.76668 -10.68359 -10.67878 -10.44152 -10.19629 -9.92599 -9.88832 -9.47565 -9.23483 -8.49851 -8.46482 -8.36863 -6.60565 -5.69444 -3.12985 3.08324 3.47528 3.54349 3.55533 3.58945 3.93783 4.51424 4.58806 4.63330 4.93541 5.16313 5.22900 5.26881 5.32670 5.39591 5.44859 5.46905 5.50013 5.58390 5.67390 5.72696 5.75412 5.83245 5.87780 5.98583 6.12168 6.17372 6.33758 6.37519 6.44824 6.54831 6.73810 6.78325 6.81270 6.93072 6.98924 7.02405 7.35975 7.79204 7.89070 8.00520 8.53914 8.73263 9.28881 9.92860 10.47564 11.38335 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.005613 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.474232 B = 4987.479437 C = 6061.871923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.518 5.518 3 C 0.034 3.966 4 C -0.110 4.110 5 C -0.121 4.121 6 H 0.097 0.903 7 C 0.520 3.480 8 O -0.527 6.527 9 N -0.721 5.721 10 C 0.117 3.883 11 H 0.080 0.920 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.143 3.857 15 N -0.589 5.589 16 C -0.259 4.259 17 H 0.066 0.934 18 C 0.008 3.992 19 N -0.897 5.897 20 Si 0.901 3.099 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.168 3.832 25 C 0.045 3.955 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.391 0.609 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.055 0.945 40 H 0.254 0.746 41 H 0.095 0.905 42 H 0.016 0.984 43 H 0.050 0.950 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 10.349 -9.872 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.242 5.242 3 C -0.094 4.094 4 C -0.148 4.148 5 C -0.143 4.143 6 H 0.115 0.885 7 C 0.304 3.696 8 O -0.403 6.403 9 N -0.372 5.372 10 C 0.011 3.989 11 H 0.099 0.901 12 C -0.154 4.154 13 C -0.171 4.171 14 C 0.016 3.984 15 N -0.311 5.311 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.540 5.540 20 Si 0.731 3.269 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.041 3.959 25 C -0.083 4.083 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.223 0.777 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.155 10.185 -8.662 15.661 hybrid contribution -0.324 0.399 -0.334 0.613 sum -8.479 10.584 -8.996 16.274 Atomic orbital electron populations 1.22522 0.87817 1.02184 1.00670 1.64732 1.07980 1.14944 1.36568 1.23293 0.95077 0.89727 1.01267 1.22470 0.96770 0.96898 0.98652 1.22198 0.94208 0.96598 1.01304 0.88522 1.20194 0.87482 0.81494 0.80403 1.90725 1.38401 1.73807 1.37348 1.46069 1.24338 1.26178 1.40580 1.21960 0.88511 0.91241 0.97155 0.90147 1.21673 0.99246 0.98218 0.96228 1.22005 0.97466 0.98469 0.99154 1.20940 0.98301 0.92572 0.86566 1.43963 1.38777 1.42470 1.05930 1.19145 0.93609 1.42157 0.83930 0.91634 1.25028 0.95328 1.00951 0.97868 1.70010 1.08765 1.52696 1.22559 0.86311 0.79886 0.78011 0.82679 1.21249 1.21776 1.20465 1.21086 0.89465 0.88046 0.97339 1.22874 0.93866 1.00368 0.91197 0.91136 0.91232 0.95616 0.93911 0.89752 0.88389 0.90804 0.77662 0.92323 0.93216 0.92701 0.92153 0.96493 0.92674 0.93613 0.88644 0.96613 0.93164 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.06 0.56 0.73 16 2 N -0.52 -6.79 5.55 -238.72 -1.33 -8.11 16 3 C 0.03 0.39 6.56 -1.89 -0.01 0.37 16 4 C -0.11 -1.43 6.39 -24.87 -0.16 -1.59 16 5 C -0.12 -1.57 3.38 -90.42 -0.31 -1.88 16 6 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.52 9.14 6.93 -10.98 -0.08 9.07 16 8 O -0.53 -11.95 15.11 5.56 0.08 -11.86 16 9 N -0.72 -11.79 4.92 -53.69 -0.26 -12.06 16 10 C 0.12 2.31 2.60 -67.81 -0.18 2.13 16 11 H 0.08 1.82 7.58 -51.93 -0.39 1.43 16 12 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 13 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 14 C 0.14 3.01 6.51 -3.72 -0.02 2.98 16 15 N -0.59 -15.24 2.99 -172.32 -0.52 -15.76 16 16 C -0.26 -7.42 9.59 -15.06 -0.14 -7.56 16 17 H 0.07 1.84 7.89 -52.48 -0.41 1.42 16 18 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 19 N -0.90 -27.28 11.19 55.49 0.62 -26.66 16 20 Si 0.90 23.00 29.59 -169.99 -5.03 17.97 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.17 4.16 4.89 -3.71 -0.02 4.14 16 25 C 0.05 0.57 6.28 -2.76 -0.02 0.55 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.22 8.00 -51.93 -0.42 -0.19 16 29 H 0.04 0.41 7.96 -51.93 -0.41 -0.01 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.61 6.91 -51.93 -0.36 1.26 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.39 4.97 8.58 -40.82 -0.35 4.62 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 40 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.10 2.81 6.03 -51.93 -0.31 2.50 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.50 7.73 -51.93 -0.40 0.10 16 44 H 0.09 1.33 7.59 -51.93 -0.39 0.93 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -33.87 343.64 -9.66 -43.54 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.65 Total: 3.11 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.76 Total: 4.66 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -1.48 Total: -62.59 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.87 -9.66 -43.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009510590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.496 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds