Wall clock time and date at job start Tue Mar 31 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00511 * 3 2 1 7 7 C 1.38814 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 204.22080 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.22367 * 7 2 1 10 10 C 1.46930 * 120.63047 * 29.24542 * 9 7 2 11 11 C 1.53187 * 108.77447 * 126.36972 * 10 9 7 12 12 C 1.53044 * 109.31450 * 54.63251 * 11 10 9 13 13 C 1.53042 * 109.53662 * 298.63496 * 12 11 10 14 14 H 1.08994 * 109.49679 * 301.40966 * 13 12 11 15 15 N 1.46496 * 109.49440 * 181.34655 * 13 12 11 16 16 C 1.34780 * 120.00080 * 154.99686 * 15 13 12 17 17 O 1.21290 * 119.99453 * 0.02562 * 16 15 13 18 18 C 1.50694 * 120.00070 * 179.97438 * 16 15 13 19 19 N 1.46913 * 109.46789 * 180.02562 * 18 16 15 20 20 C 1.48530 * 110.99807 * 52.60720 * 19 18 16 21 21 C 1.54941 * 103.22450 * 159.72122 * 20 19 18 22 22 C 1.54601 * 102.91986 * 322.58197 * 21 20 19 23 23 C 1.47907 * 110.99624 * 170.00277 * 19 18 16 24 24 C 1.46926 * 120.62610 * 208.96279 * 9 7 2 25 25 H 0.96998 * 119.99374 * 185.77013 * 1 2 3 26 26 H 1.09001 * 109.58218 * 246.15690 * 10 9 7 27 27 H 1.08998 * 109.58258 * 6.43678 * 10 9 7 28 28 H 1.09001 * 109.49858 * 174.58638 * 11 10 9 29 29 H 1.09006 * 109.49530 * 294.67981 * 11 10 9 30 30 H 1.09002 * 109.45884 * 58.65430 * 12 11 10 31 31 H 1.09004 * 109.46009 * 178.61596 * 12 11 10 32 32 H 0.97001 * 120.00313 * 335.00220 * 15 13 12 33 33 H 1.09000 * 109.47265 * 300.00163 * 18 16 15 34 34 H 1.09000 * 109.47302 * 60.01001 * 18 16 15 35 35 H 1.09006 * 110.66599 * 278.15104 * 20 19 18 36 36 H 1.08994 * 110.67362 * 41.28148 * 20 19 18 37 37 H 1.09002 * 110.72188 * 204.22767 * 21 20 19 38 38 H 1.09001 * 110.87804 * 81.01055 * 21 20 19 39 39 H 1.08997 * 110.30497 * 263.04355 * 22 21 20 40 40 H 1.09001 * 110.38977 * 140.91988 * 22 21 20 41 41 H 1.09001 * 109.91714 * 333.50260 * 23 19 18 42 42 H 1.08994 * 109.91752 * 94.80175 * 23 19 18 43 43 H 1.08991 * 109.58972 * 353.42219 * 24 9 7 44 44 H 1.09010 * 109.58337 * 113.84630 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0190 -1.2434 0.3831 9 7 1.4161 -2.3357 -0.4877 10 6 0.3974 -2.2524 -1.5432 11 6 0.8093 -3.1691 -2.6993 12 6 1.0461 -4.5833 -2.1644 13 6 2.1818 -4.5591 -1.1389 14 1 3.0862 -4.1702 -1.6068 15 7 2.4292 -5.9182 -0.6512 16 6 3.6407 -6.2483 -0.1613 17 8 4.5258 -5.4199 -0.1239 18 6 3.8950 -7.6462 0.3408 19 7 5.2800 -7.7501 0.8194 20 6 5.5862 -6.6774 1.8001 21 6 6.8182 -7.2318 2.5587 22 6 6.5086 -8.7428 2.6634 23 6 5.4990 -9.0256 1.5355 24 6 1.7895 -3.6586 0.0310 25 1 -0.4849 -0.8358 0.0845 26 1 -0.5660 -2.5739 -1.1474 27 1 0.3221 -1.2245 -1.8980 28 1 0.0162 -3.1908 -3.4467 29 1 1.7267 -2.7932 -3.1525 30 1 0.1357 -4.9490 -1.6894 31 1 1.3155 -5.2432 -2.9891 32 1 1.7212 -6.5806 -0.6809 33 1 3.2104 -7.8683 1.1595 34 1 3.7358 -8.3579 -0.4693 35 1 5.8359 -5.7480 1.2882 36 1 4.7491 -6.5292 2.4822 37 1 6.8946 -6.7841 3.5496 38 1 7.7327 -7.0640 1.9896 39 1 6.0665 -8.9720 3.6330 40 1 7.4162 -9.3277 2.5143 41 1 4.5591 -9.3800 1.9587 42 1 5.9056 -9.7704 0.8514 43 1 2.6341 -3.5588 0.7127 44 1 0.9419 -4.0972 0.5578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009527708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:08 Heat of formation + Delta-G solvation = -11.170870 kcal Electronic energy + Delta-G solvation = -22879.259820 eV Core-core repulsion = 19638.826867 eV Total energy + Delta-G solvation = -3240.432953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09096 -38.52060 -37.27622 -34.47373 -32.71839 -32.24465 -30.41470 -28.99763 -28.90546 -26.33541 -25.09193 -22.46093 -22.03216 -21.21970 -20.94139 -20.19606 -19.28426 -17.37789 -16.99632 -16.28682 -15.90658 -15.28147 -15.19163 -14.38618 -14.21379 -13.99479 -13.76077 -13.51699 -13.35089 -13.05567 -12.74798 -12.55451 -12.29032 -12.24423 -12.01303 -11.67501 -11.44700 -11.22035 -11.01372 -10.74803 -10.70035 -10.67812 -10.36224 -10.07234 -10.01748 -9.96899 -9.39764 -9.29352 -8.88727 -8.52393 -8.29272 -6.86381 -6.04424 -3.22663 2.81429 3.18683 3.53618 3.56441 3.74505 3.95841 4.52722 4.55956 4.64478 4.78936 4.89314 5.09577 5.18532 5.19689 5.20782 5.33179 5.38218 5.40330 5.53429 5.57675 5.61539 5.64480 5.73207 5.88568 5.94999 6.04500 6.05970 6.13255 6.23529 6.39154 6.43626 6.55569 6.62750 6.69974 6.76415 6.81714 6.90652 7.06534 7.18017 7.72185 8.06499 8.46256 8.60739 9.13297 9.86738 10.29505 11.23775 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.004090 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.065916 B = 6844.741524 C = 7850.219388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.348 4.348 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.148 3.852 11 C -0.134 4.134 12 C -0.115 4.115 13 C 0.128 3.872 14 H 0.086 0.914 15 N -0.724 5.724 16 C 0.509 3.491 17 O -0.520 6.520 18 C 0.027 3.973 19 N -0.502 5.502 20 C 0.030 3.970 21 C -0.126 4.126 22 C -0.131 4.131 23 C 0.034 3.966 24 C 0.145 3.855 25 H 0.268 0.732 26 H 0.017 0.983 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 -18.888 0.748 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.225 4.225 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.477 4.477 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.104 0.896 15 N -0.376 5.376 16 C 0.294 3.706 17 O -0.395 6.395 18 C -0.104 4.104 19 N -0.226 5.226 20 C -0.097 4.097 21 C -0.164 4.164 22 C -0.169 4.169 23 C -0.094 4.094 24 C 0.018 3.982 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.227 0.773 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.779 -16.546 0.261 17.883 hybrid contribution -0.849 -2.307 0.792 2.582 sum 5.930 -18.853 1.052 19.792 Atomic orbital electron populations 1.70789 1.06572 1.30230 1.48120 1.25873 0.96527 1.01448 0.98609 0.83528 0.74768 0.75924 0.76332 1.21098 1.21963 1.21939 1.20003 0.97140 0.88137 1.42419 0.92613 1.44044 1.46653 1.01130 1.40016 1.20999 0.90518 0.99043 0.87268 1.22059 1.01179 0.94816 0.99347 1.21670 0.97660 0.98355 0.97591 1.21597 0.99034 0.80702 0.96452 0.89559 1.46105 1.13025 1.14009 1.64441 1.20390 0.82461 0.89614 0.78148 1.90675 1.43450 1.51411 1.53989 1.22231 0.91191 0.95764 1.01240 1.64689 1.20306 1.02615 1.35029 1.23548 0.96217 0.97165 0.92749 1.22528 0.99043 0.94559 1.00288 1.22397 0.99233 0.97329 0.97981 1.22933 0.98389 0.92750 0.95324 1.21085 0.97564 0.86402 0.93167 0.92131 0.96489 0.90156 0.92498 0.92038 0.92298 0.92782 0.77328 0.91993 0.88001 0.86704 0.94383 0.91174 0.90730 0.91664 0.91083 0.93853 0.90297 0.92344 0.96894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 12.45 55.49 0.69 -26.97 16 2 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 3 Si 1.06 25.80 29.98 -169.99 -5.10 20.71 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.35 -10.03 9.48 -15.06 -0.14 -10.17 16 8 H 0.06 1.65 7.94 -52.49 -0.42 1.24 16 9 N -0.59 -15.23 2.84 -172.58 -0.49 -15.72 16 10 C 0.15 3.43 4.70 -3.71 -0.02 3.41 16 11 C -0.13 -2.47 6.08 -26.61 -0.16 -2.64 16 12 C -0.11 -1.82 5.36 -26.69 -0.14 -1.96 16 13 C 0.13 2.29 2.59 -68.04 -0.18 2.11 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -10.21 5.08 -53.91 -0.27 -10.49 16 16 C 0.51 7.71 7.51 -10.99 -0.08 7.62 16 17 O -0.52 -10.13 13.18 5.55 0.07 -10.06 16 18 C 0.03 0.31 5.52 -4.97 -0.03 0.28 16 19 N -0.50 -6.23 5.26 -231.88 -1.22 -7.45 16 20 C 0.03 0.40 5.30 -1.90 -0.01 0.39 16 21 C -0.13 -1.33 7.06 -24.87 -0.18 -1.51 16 22 C -0.13 -1.15 6.93 -25.37 -0.18 -1.32 16 23 C 0.03 0.32 6.70 -2.75 -0.02 0.30 16 24 C 0.15 3.20 6.06 -3.93 -0.02 3.18 16 25 H 0.27 8.11 6.72 -40.82 -0.27 7.84 16 26 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 27 H 0.08 2.10 6.38 -51.93 -0.33 1.77 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.39 4.16 8.60 -40.82 -0.35 3.81 16 33 H 0.06 0.60 7.81 -51.93 -0.41 0.19 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.12 1.90 5.97 -51.93 -0.31 1.59 16 36 H 0.04 0.52 8.02 -51.93 -0.42 0.10 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.36 7.57 -51.93 -0.39 -0.03 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 44 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -32.96 340.03 -9.99 -42.95 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.56 Total: 2.94 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.24 Total: -1.03 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -1.29 Total: -60.63 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.10 Total: 20.71 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.96 -9.99 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009527708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.781 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds