Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.91080 * 2 1 4 4 C 1.53997 * 109.92151 * 238.89185 * 2 1 3 5 5 H 1.08995 * 110.30472 * 120.40566 * 4 2 1 6 6 C 1.50698 * 110.30720 * 358.34181 * 4 2 1 7 7 O 1.21282 * 119.99631 * 273.22727 * 6 4 2 8 8 N 1.34773 * 120.00409 * 93.22179 * 6 4 2 9 9 C 1.46499 * 120.00351 * 179.97438 * 8 6 4 10 10 H 1.09000 * 110.63782 * 36.69291 * 9 8 6 11 11 C 1.55155 * 110.71984 * 160.02960 * 9 8 6 12 12 C 1.54903 * 101.58107 * 153.86860 * 11 9 8 13 13 N 1.47428 * 104.83458 * 322.98863 * 12 11 9 14 14 C 1.36931 * 125.65211 * 204.09731 * 13 12 11 15 15 H 1.07995 * 120.00417 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99836 * 0.03873 * 14 13 12 17 17 N 1.31616 * 120.00105 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47050 * 59.99456 * 18 16 14 20 20 H 1.48497 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46915 * 299.99532 * 18 16 14 22 22 C 1.47023 * 108.70195 * 24.12863 * 13 12 11 23 23 C 1.54587 * 105.14118 * 239.42337 * 4 2 1 24 24 C 1.54945 * 102.92414 * 338.04044 * 23 4 2 25 25 N 1.47907 * 109.91643 * 121.09694 * 2 1 3 26 26 C 1.46897 * 111.00273 * 265.19990 * 25 2 1 27 27 H 1.09006 * 109.46745 * 183.13172 * 1 2 3 28 28 H 1.09003 * 109.46578 * 63.13753 * 1 2 3 29 29 H 1.08998 * 109.47103 * 303.13329 * 1 2 3 30 30 H 0.97007 * 119.99475 * 0.02562 * 8 6 4 31 31 H 1.09008 * 111.00115 * 271.93783 * 11 9 8 32 32 H 1.09001 * 111.00753 * 35.79084 * 11 9 8 33 33 H 1.09000 * 110.36854 * 204.15204 * 12 11 9 34 34 H 1.08997 * 110.37229 * 81.82863 * 12 11 9 35 35 H 0.97006 * 120.00137 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.88214 * 239.52910 * 22 13 12 37 37 H 1.08992 * 110.01087 * 118.42846 * 22 13 12 38 38 H 1.09001 * 110.72637 * 96.39720 * 23 4 2 39 39 H 1.09004 * 110.72810 * 219.68576 * 23 4 2 40 40 H 1.09005 * 110.66768 * 155.84775 * 24 23 4 41 41 H 1.08994 * 110.66726 * 278.81117 * 24 23 4 42 42 H 1.09007 * 109.47044 * 59.99459 * 26 25 2 43 43 H 1.09000 * 109.47456 * 179.97438 * 26 25 2 44 44 H 1.09007 * 109.47178 * 300.00053 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0547 -0.7480 -1.2396 5 1 2.6700 -0.0858 -1.8486 6 6 0.9047 -1.2858 -2.0516 7 8 0.4324 -2.3715 -1.7889 8 7 0.4011 -0.5602 -3.0696 9 6 -0.7165 -1.0833 -3.8593 10 1 -1.4110 -1.6337 -3.2247 11 6 -1.4434 0.0643 -4.6090 12 6 -2.0507 -0.6898 -5.8181 13 7 -1.0343 -1.6918 -6.1872 14 6 -0.8893 -2.2639 -7.4228 15 1 -0.1099 -2.9918 -7.5929 16 6 -1.7441 -1.9079 -8.4571 17 7 -2.6941 -1.0210 -8.2499 18 14 -1.5468 -2.6889 -10.1426 19 1 -1.7140 -4.1600 -10.0291 20 1 -2.5758 -2.1438 -11.0641 21 1 -0.1942 -2.3839 -10.6741 22 6 -0.2024 -1.9757 -5.0087 23 6 2.9059 -1.9105 -0.6794 24 6 3.2682 -1.4197 0.7449 25 7 2.0338 -0.7182 1.1908 26 6 2.3211 0.2165 2.2870 27 1 -0.3633 -1.0262 0.0561 28 1 -0.3632 0.4644 -0.9168 29 1 -0.3633 0.5617 0.8605 30 1 0.7791 0.3080 -3.2799 31 1 -2.2257 0.5022 -3.9887 32 1 -0.7362 0.8255 -4.9383 33 1 -2.2237 -0.0022 -6.6461 34 1 -2.9806 -1.1807 -5.5311 35 1 -3.2917 -0.7725 -8.9725 36 1 0.8394 -1.7387 -5.2245 37 1 -0.2939 -3.0259 -4.7318 38 1 2.3215 -2.8294 -0.6337 39 1 3.8054 -2.0535 -1.2784 40 1 3.4888 -2.2640 1.3982 41 1 4.1116 -0.7302 0.7113 42 1 1.4093 0.7483 2.5593 43 1 2.6895 -0.3379 3.1501 44 1 3.0771 0.9328 1.9650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014486649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = -1.139019 kcal Electronic energy + Delta-G solvation = -22907.527190 eV Core-core repulsion = 19667.529251 eV Total energy + Delta-G solvation = -3239.997939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52746 -38.45165 -37.00399 -33.98894 -32.61913 -31.82822 -31.38829 -29.16638 -27.43187 -26.38864 -25.10105 -24.45782 -22.18975 -21.15119 -20.49244 -19.89664 -19.27106 -17.14358 -16.83364 -16.25536 -15.93952 -15.27556 -14.89218 -14.62460 -14.54879 -14.14598 -13.82122 -13.31108 -13.13134 -12.74384 -12.51589 -12.42178 -12.20553 -11.96837 -11.80147 -11.61327 -11.49748 -11.37522 -11.08229 -11.02677 -10.94264 -10.81817 -10.77013 -10.46853 -10.14128 -9.81323 -9.62104 -9.44870 -8.69815 -8.68610 -8.64350 -6.83055 -5.65127 -3.06506 2.81538 3.36835 3.41994 3.45796 3.47537 3.69748 4.36657 4.38020 4.50776 4.72750 4.96001 5.01962 5.07908 5.13310 5.20685 5.26234 5.37387 5.45779 5.46784 5.53524 5.56870 5.60950 5.66090 5.77102 5.81137 5.83948 5.86700 6.11394 6.21466 6.26355 6.41975 6.49150 6.58691 6.63137 6.77817 6.79576 7.04818 7.48079 7.62367 7.75266 7.85313 8.34752 8.48337 9.22492 9.83141 10.47484 11.39056 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042398 B = 0.003415 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.256703 B = 8196.178369 C = 8616.749486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.058 0.942 4 C -0.120 4.120 5 H 0.092 0.908 6 C 0.527 3.473 7 O -0.533 6.533 8 N -0.718 5.718 9 C 0.132 3.868 10 H 0.090 0.910 11 C -0.149 4.149 12 C 0.153 3.847 13 N -0.603 5.603 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.924 5.924 18 Si 0.916 3.084 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.129 3.871 23 C -0.112 4.112 24 C 0.036 3.964 25 N -0.515 5.515 26 C 0.017 3.983 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.396 0.604 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.015 0.985 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.614 6.260 18.008 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 H 0.076 0.924 4 C -0.142 4.142 5 H 0.110 0.890 6 C 0.313 3.687 7 O -0.410 6.410 8 N -0.369 5.369 9 C 0.028 3.972 10 H 0.108 0.892 11 C -0.188 4.188 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.573 5.573 18 Si 0.746 3.254 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.002 3.998 23 C -0.150 4.150 24 C -0.091 4.091 25 N -0.240 5.240 26 C -0.132 4.132 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.765 5.111 18.188 21.267 hybrid contribution 0.925 0.679 -1.215 1.671 sum 10.689 5.789 16.973 20.878 Atomic orbital electron populations 1.21963 0.93390 1.03789 1.01600 1.22229 0.96938 0.95322 0.88326 0.92383 1.22269 0.96330 0.99050 0.96559 0.88967 1.20108 0.83795 0.84950 0.79868 1.90696 1.60627 1.21013 1.68640 1.46167 1.36101 1.21862 1.32738 1.22074 0.87189 0.96191 0.91783 0.89205 1.23313 0.99440 0.96931 0.99132 1.21934 0.89715 0.91705 0.93821 1.44444 1.34621 1.47795 1.06143 1.19047 1.12627 1.18038 0.85245 0.90543 1.24781 0.97817 0.99701 0.98389 1.69759 1.20785 1.35403 1.31363 0.86132 0.77092 0.78661 0.83501 1.21186 1.21551 1.21187 1.21592 0.94476 0.96490 0.87212 1.22513 0.99241 0.98745 0.94529 1.23287 0.91045 0.98439 0.96358 1.64757 1.26656 1.26178 1.06375 1.22518 1.00582 0.95178 0.94911 0.90640 0.91810 0.92609 0.76961 0.91786 0.91720 0.87232 0.96697 0.93662 0.95834 0.95580 0.88459 0.90621 0.89687 0.93723 0.91287 0.91189 0.95496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.08 0.83 3.08 -66.64 -0.21 0.63 16 3 H 0.06 0.51 7.73 -51.93 -0.40 0.11 16 4 C -0.12 -1.33 3.38 -90.42 -0.31 -1.63 16 5 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 6 C 0.53 7.76 4.75 -10.99 -0.05 7.71 16 7 O -0.53 -10.01 14.72 5.56 0.08 -9.93 16 8 N -0.72 -10.30 4.59 -52.03 -0.24 -10.54 16 9 C 0.13 2.40 3.24 -66.09 -0.21 2.19 16 10 H 0.09 1.75 7.69 -51.93 -0.40 1.35 16 11 C -0.15 -2.70 6.69 -24.59 -0.16 -2.86 16 12 C 0.15 3.70 5.89 -2.53 -0.01 3.68 16 13 N -0.60 -15.77 3.39 -170.08 -0.58 -16.34 16 14 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 17 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 18 Si 0.92 22.24 29.55 -169.99 -5.02 17.22 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.13 2.87 6.99 -3.06 -0.02 2.85 16 23 C -0.11 -1.21 6.56 -24.87 -0.16 -1.37 16 24 C 0.04 0.33 6.57 -1.74 -0.01 0.32 16 25 N -0.52 -5.33 5.19 -230.53 -1.20 -6.52 16 26 C 0.02 0.13 9.41 60.06 0.57 0.70 16 27 H 0.07 1.09 7.06 -51.93 -0.37 0.72 16 28 H 0.06 0.73 7.05 -51.93 -0.37 0.36 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.40 4.60 8.52 -40.82 -0.35 4.25 16 31 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.06 1.10 8.00 -51.93 -0.42 0.68 16 33 H 0.11 2.94 5.87 -51.93 -0.31 2.63 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.02 0.52 8.03 -51.93 -0.42 0.10 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.31 6.89 -51.93 -0.36 0.95 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.35 7.97 -51.93 -0.41 -0.07 16 42 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.03 0.19 8.01 -51.92 -0.42 -0.23 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -32.18 341.79 -9.33 -41.50 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.56 Total: 1.89 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.53 Total: 3.93 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -1.45 Total: -59.76 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.18 -9.33 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014486649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.365 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds