Wall clock time and date at job start Tue Mar 31 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.06717 * 2 1 4 4 C 1.53998 * 109.91803 * 238.79540 * 2 1 3 5 5 H 1.09001 * 110.39234 * 120.46224 * 4 2 1 6 6 C 1.50695 * 110.30903 * 358.33677 * 4 2 1 7 7 O 1.21291 * 119.99835 * 275.96207 * 6 4 2 8 8 N 1.34774 * 120.00225 * 95.95552 * 6 4 2 9 9 C 1.46500 * 120.00129 * 179.97438 * 8 6 4 10 10 H 1.09002 * 110.78171 * 323.22130 * 9 8 6 11 11 C 1.55160 * 110.71950 * 199.97740 * 9 8 6 12 12 C 1.54903 * 101.58386 * 277.14156 * 11 9 8 13 13 N 1.47420 * 104.83396 * 322.99073 * 12 11 9 14 14 C 1.36937 * 125.64930 * 204.16117 * 13 12 11 15 15 H 1.08002 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00213 * 359.96244 * 14 13 12 17 17 N 1.31621 * 119.99654 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00246 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47255 * 89.99837 * 18 16 14 20 20 H 1.48507 * 109.47049 * 209.99967 * 18 16 14 21 21 H 1.48500 * 109.47185 * 329.99778 * 18 16 14 22 22 C 1.47025 * 108.70246 * 24.12940 * 13 12 11 23 23 C 1.54595 * 105.13672 * 239.42108 * 4 2 1 24 24 C 1.54938 * 102.92411 * 338.03802 * 23 4 2 25 25 N 1.47898 * 109.91840 * 121.20189 * 2 1 3 26 26 C 1.46900 * 111.00361 * 265.19654 * 25 2 1 27 27 H 1.09002 * 109.46808 * 183.38777 * 1 2 3 28 28 H 1.08999 * 109.47152 * 303.39012 * 1 2 3 29 29 H 1.08997 * 109.47236 * 63.39066 * 1 2 3 30 30 H 0.96999 * 120.00026 * 0.02562 * 8 6 4 31 31 H 1.09000 * 111.00088 * 35.22282 * 11 9 8 32 32 H 1.09006 * 110.99821 * 159.06603 * 11 9 8 33 33 H 1.09000 * 110.36752 * 204.15334 * 12 11 9 34 34 H 1.08997 * 110.36746 * 81.83083 * 12 11 9 35 35 H 0.96998 * 120.00141 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.88067 * 239.51869 * 22 13 12 37 37 H 1.09002 * 109.88221 * 118.36156 * 22 13 12 38 38 H 1.09002 * 110.72782 * 96.40289 * 23 4 2 39 39 H 1.09000 * 110.72417 * 219.68142 * 23 4 2 40 40 H 1.09004 * 110.66591 * 155.84758 * 24 23 4 41 41 H 1.08994 * 110.67053 * 278.98383 * 24 23 4 42 42 H 1.09003 * 109.47341 * 302.47969 * 26 25 2 43 43 H 1.09003 * 109.46950 * 62.47789 * 26 25 2 44 44 H 1.08995 * 109.47402 * 182.47431 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2384 5 1 2.6710 -0.0905 -1.8491 6 6 0.9046 -1.2893 -2.0494 7 8 0.3999 -2.3520 -1.7540 8 7 0.4369 -0.5908 -3.1028 9 6 -0.6807 -1.1153 -3.8915 10 1 -0.6144 -2.1994 -3.9829 11 6 -0.7254 -0.4479 -5.2916 12 6 -1.4753 0.8719 -4.9833 13 7 -2.4857 0.5051 -3.9744 14 6 -3.6550 1.1765 -3.7351 15 1 -4.3323 0.8257 -2.9705 16 6 -3.9695 2.3081 -4.4750 17 7 -3.1437 2.7360 -5.4062 18 14 -5.5648 3.2235 -4.1491 19 1 -5.3353 4.2660 -3.1167 20 1 -6.0331 3.8644 -5.4042 21 1 -6.5944 2.2679 -3.6673 22 6 -2.0305 -0.7014 -3.2682 23 6 2.9059 -1.9117 -0.6762 24 6 3.2682 -1.4184 0.7472 25 7 2.0339 -0.7204 1.1894 26 6 2.3212 0.2124 2.2873 27 1 -0.3633 -1.0259 0.0607 28 1 -0.3633 0.5656 0.8580 29 1 -0.3633 0.4603 -0.9188 30 1 0.8407 0.2589 -3.3391 31 1 0.2803 -0.2487 -5.6616 32 1 -1.2859 -1.0600 -5.9983 33 1 -1.9585 1.2528 -5.8830 34 1 -0.7869 1.6137 -4.5784 35 1 -3.3632 3.5269 -5.9231 36 1 -2.7587 -1.5024 -3.3954 37 1 -1.8981 -0.4829 -2.2085 38 1 2.3215 -2.8306 -0.6289 39 1 3.8052 -2.0558 -1.2749 40 1 3.4889 -2.2615 1.4020 41 1 4.1097 -0.7266 0.7121 42 1 3.0445 0.9559 1.9525 43 1 1.4008 0.7115 2.5902 44 1 2.7314 -0.3382 3.1338 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014486657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:12 Heat of formation + Delta-G solvation = -1.654041 kcal Electronic energy + Delta-G solvation = -23376.346833 eV Core-core repulsion = 20136.326561 eV Total energy + Delta-G solvation = -3240.020272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46341 -38.43987 -36.97333 -33.78557 -32.52747 -31.70260 -31.27158 -29.13628 -27.51527 -26.31210 -24.94597 -24.49017 -22.29624 -21.05280 -20.19228 -19.77699 -19.36912 -17.10489 -16.84165 -16.15949 -15.76598 -15.21938 -14.72382 -14.60862 -14.54085 -13.83561 -13.73867 -13.27974 -13.24982 -12.63134 -12.61488 -12.26333 -12.08694 -11.91252 -11.70077 -11.60600 -11.43036 -11.18087 -11.04305 -10.91305 -10.87267 -10.78122 -10.70442 -10.37284 -10.11883 -9.88593 -9.59371 -9.40263 -8.69929 -8.57613 -8.56480 -6.83117 -5.66289 -3.06785 2.89077 3.39869 3.45327 3.46993 3.47720 3.82549 4.45850 4.49606 4.50797 4.82705 5.05436 5.14936 5.18031 5.25437 5.31310 5.37305 5.38631 5.45687 5.51527 5.59310 5.68302 5.74019 5.74763 5.78542 5.88379 6.01402 6.06212 6.14788 6.28513 6.38512 6.48679 6.51493 6.61673 6.76718 6.78697 6.92092 7.09822 7.42885 7.62769 7.80734 7.88567 8.34571 8.55627 9.22179 9.82952 10.47518 11.38012 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.004468 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.981340 B = 6265.743255 C = 6999.317084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 H 0.058 0.942 4 C -0.119 4.119 5 H 0.090 0.910 6 C 0.529 3.471 7 O -0.539 6.539 8 N -0.712 5.712 9 C 0.132 3.868 10 H 0.086 0.914 11 C -0.153 4.153 12 C 0.152 3.848 13 N -0.603 5.603 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.924 5.924 18 Si 0.913 3.087 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.127 3.873 23 C -0.111 4.111 24 C 0.036 3.964 25 N -0.515 5.515 26 C 0.016 3.984 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.010 0.990 35 H 0.251 0.749 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.026 0.974 43 H 0.069 0.931 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.728 -5.220 8.108 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 H 0.076 0.924 4 C -0.141 4.141 5 H 0.109 0.891 6 C 0.315 3.685 7 O -0.416 6.416 8 N -0.362 5.362 9 C 0.027 3.973 10 H 0.104 0.896 11 C -0.193 4.193 12 C 0.027 3.973 13 N -0.329 5.329 14 C -0.347 4.347 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.744 3.256 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.000 4.000 23 C -0.149 4.149 24 C -0.092 4.092 25 N -0.239 5.239 26 C -0.132 4.132 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.827 -6.170 8.442 17.335 hybrid contribution 0.027 1.736 -0.135 1.742 sum 13.854 -4.434 8.306 16.750 Atomic orbital electron populations 1.21995 0.92873 1.03720 1.02233 1.22243 0.97260 0.95199 0.87964 0.92351 1.22253 0.96251 0.98895 0.96745 0.89129 1.20070 0.83905 0.84522 0.80011 1.90671 1.59832 1.22723 1.68411 1.46071 1.35319 1.24303 1.30527 1.21966 0.85934 0.97947 0.91482 0.89606 1.23337 1.00555 1.00863 0.94497 1.21933 0.89544 0.89914 0.95893 1.44503 1.20470 1.28005 1.39925 1.19094 0.94766 1.05471 1.15357 0.90552 1.24751 0.98787 0.98381 0.98765 1.69780 1.36208 1.25848 1.25515 0.86081 0.82802 0.79687 0.77009 1.21716 1.21678 1.20690 1.21704 0.92423 0.90380 0.95494 1.22500 0.99004 0.98705 0.94684 1.23234 0.91241 0.98411 0.96291 1.64715 1.26315 1.26388 1.06483 1.22519 1.00834 0.95090 0.94784 0.90684 0.92680 0.91210 0.76726 0.91821 0.90688 0.87469 0.97230 0.93815 0.95290 0.95375 0.88627 0.90826 0.89780 0.93812 0.95511 0.91173 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.37 37.16 0.31 -1.97 16 2 C 0.08 1.04 3.09 -66.64 -0.21 0.83 16 3 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 4 C -0.12 -1.45 3.37 -90.42 -0.31 -1.76 16 5 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.53 8.20 4.73 -10.99 -0.05 8.15 16 7 O -0.54 -10.17 14.63 5.55 0.08 -10.09 16 8 N -0.71 -11.08 4.74 -52.03 -0.25 -11.32 16 9 C 0.13 2.36 3.25 -66.09 -0.21 2.14 16 10 H 0.09 1.53 7.70 -51.93 -0.40 1.13 16 11 C -0.15 -2.75 6.64 -24.58 -0.16 -2.91 16 12 C 0.15 3.52 5.87 -2.54 -0.01 3.50 16 13 N -0.60 -15.23 3.39 -170.08 -0.58 -15.81 16 14 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 17 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 18 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.13 2.76 6.98 -3.06 -0.02 2.73 16 23 C -0.11 -1.22 6.56 -24.87 -0.16 -1.39 16 24 C 0.04 0.36 6.56 -1.89 -0.01 0.35 16 25 N -0.51 -6.14 5.18 -230.78 -1.20 -7.33 16 26 C 0.02 0.16 9.41 60.06 0.57 0.72 16 27 H 0.07 1.31 6.96 -51.93 -0.36 0.95 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.18 6.46 -51.93 -0.34 0.84 16 30 H 0.40 5.61 8.62 -40.82 -0.35 5.26 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.64 7.35 -51.93 -0.38 0.26 16 38 H 0.10 1.28 6.93 -51.93 -0.36 0.92 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 42 H 0.03 0.23 7.99 -51.93 -0.42 -0.18 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -31.14 340.61 -9.29 -40.44 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.50 Total: 4.10 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -0.53 Total: 3.73 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -1.46 Total: -60.35 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.14 -9.29 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014486657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.784 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds