Wall clock time and date at job start Tue Mar 31 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46847 * 111.00156 * 2 1 4 4 C 1.53037 * 109.52846 * 174.16269 * 3 2 1 5 5 C 1.53119 * 109.27736 * 59.17770 * 4 3 2 6 6 C 1.53122 * 109.15803 * 302.34475 * 5 4 3 7 7 C 1.46848 * 111.00271 * 235.79054 * 2 1 3 8 8 H 1.08994 * 109.45508 * 65.82281 * 7 2 1 9 9 C 1.50706 * 109.45661 * 305.85341 * 7 2 1 10 10 O 1.21274 * 120.00042 * 339.66804 * 9 7 2 11 11 N 1.34777 * 119.99766 * 159.94340 * 9 7 2 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 7 13 13 H 1.09006 * 110.63822 * 325.70649 * 12 11 9 14 14 C 1.55154 * 110.72278 * 202.56361 * 12 11 9 15 15 C 1.55392 * 101.36509 * 277.04346 * 14 12 11 16 16 N 1.47429 * 104.87336 * 323.01629 * 15 14 12 17 17 C 1.36930 * 125.64981 * 204.16992 * 16 15 14 18 18 H 1.07999 * 120.00483 * 179.97438 * 17 16 15 19 19 C 1.38817 * 119.99838 * 359.95428 * 17 16 15 20 20 N 1.31618 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47359 * 90.00462 * 21 19 17 23 23 H 1.48505 * 109.47294 * 210.00485 * 21 19 17 24 24 H 1.48499 * 109.47049 * 330.00096 * 21 19 17 25 25 C 1.47024 * 108.70108 * 24.13285 * 16 15 14 26 26 H 1.08998 * 109.47002 * 184.21170 * 1 2 3 27 27 H 1.09000 * 109.47335 * 304.21317 * 1 2 3 28 28 H 1.08999 * 109.47446 * 64.21203 * 1 2 3 29 29 H 1.08993 * 109.46644 * 54.14185 * 3 2 1 30 30 H 1.09010 * 109.44959 * 294.17144 * 3 2 1 31 31 H 1.08996 * 109.50143 * 299.23943 * 4 3 2 32 32 H 1.08997 * 109.53901 * 179.13704 * 4 3 2 33 33 H 1.09000 * 109.52480 * 182.44449 * 5 4 3 34 34 H 1.08994 * 109.52391 * 62.25191 * 5 4 3 35 35 H 1.08995 * 109.50652 * 297.71465 * 6 5 4 36 36 H 1.09006 * 109.50186 * 177.59752 * 6 5 4 37 37 H 0.96999 * 120.00043 * 0.02562 * 11 9 7 38 38 H 1.08999 * 111.00423 * 35.21468 * 14 12 11 39 39 H 1.09002 * 111.00238 * 159.06734 * 14 12 11 40 40 H 1.09000 * 110.34473 * 204.16822 * 15 14 12 41 41 H 1.08989 * 110.35054 * 81.86831 * 15 14 12 42 42 H 0.97004 * 119.99463 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.87994 * 239.52232 * 25 16 15 44 44 H 1.09001 * 109.88005 * 118.36222 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5181 -0.8714 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7324 -0.2708 -2.0659 9 6 1.3982 -2.1544 -1.1205 10 8 0.9219 -2.5995 -0.0978 11 7 1.3986 -2.8993 -2.2437 12 6 0.8187 -4.2445 -2.2308 13 1 0.9849 -4.7253 -1.2667 14 6 1.4033 -5.1055 -3.3816 15 6 0.5154 -4.6620 -4.5772 16 7 -0.8274 -4.4685 -4.0002 17 6 -2.0091 -4.5351 -4.6887 18 1 -2.9446 -4.3782 -4.1724 19 6 -2.0047 -4.8041 -6.0505 20 7 -0.8646 -4.9955 -6.6798 21 14 -3.6167 -4.8943 -6.9900 22 1 -3.9630 -3.5470 -7.5096 23 1 -3.4759 -5.8415 -8.1251 24 1 -4.6929 -5.3664 -6.0822 25 6 -0.6875 -4.1930 -2.5628 26 1 -0.3633 -1.0249 0.0755 27 1 -0.3634 0.5778 0.8498 28 1 -0.3634 0.4471 -0.9253 29 1 1.5634 1.9258 0.8329 30 1 1.7324 1.8606 -0.9378 31 1 3.7814 0.8568 1.0905 32 1 3.9104 2.3511 0.1313 33 1 5.1997 0.4715 -0.8906 34 1 3.8886 1.0355 -1.9560 35 1 3.7814 -1.3835 -0.0953 36 1 3.9099 -1.4303 -1.8707 37 1 1.7834 -2.5449 -3.0605 38 1 2.4512 -4.8626 -3.5576 39 1 1.2794 -6.1687 -3.1758 40 1 0.4918 -5.4396 -5.3406 41 1 0.8857 -3.7272 -4.9980 42 1 -0.8616 -5.1839 -7.6314 43 1 -1.2202 -4.9497 -1.9868 44 1 -1.0838 -3.2035 -2.3347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014956290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:37 Heat of formation + Delta-G solvation = -6.018435 kcal Electronic energy + Delta-G solvation = -23169.784559 eV Core-core repulsion = 19929.575032 eV Total energy + Delta-G solvation = -3240.209526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30614 -38.35493 -36.92386 -33.98862 -33.43597 -32.03709 -31.00623 -29.12774 -27.38653 -26.71329 -24.68436 -23.86091 -22.97326 -20.81058 -20.21036 -19.76680 -19.71204 -17.27940 -16.77259 -16.17440 -15.40613 -15.13194 -14.89013 -14.64748 -14.44077 -14.21978 -13.79523 -13.50063 -13.30286 -13.15060 -12.72322 -12.55637 -12.16094 -11.95621 -11.71359 -11.62978 -11.48556 -11.11219 -11.01318 -10.90686 -10.87698 -10.73825 -10.57740 -10.39267 -10.13447 -9.89330 -9.59470 -9.32322 -8.73276 -8.59832 -8.35521 -6.85745 -5.68208 -3.09072 2.85262 3.28770 3.38627 3.43971 3.45813 3.92002 4.47617 4.58859 4.65102 4.73855 4.98455 5.04916 5.10416 5.32783 5.36157 5.40795 5.43562 5.45652 5.49570 5.52292 5.62798 5.72170 5.75497 5.75937 5.86371 5.90379 5.92946 6.13169 6.17489 6.27470 6.36403 6.48596 6.56568 6.71009 6.87572 7.00229 7.08188 7.41065 7.60460 7.79080 7.86614 8.32656 8.53356 9.20061 9.80686 10.45267 11.36011 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.003966 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.347020 B = 7058.166667 C = 7288.257586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.519 5.519 3 C 0.055 3.945 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.106 4.106 7 C 0.069 3.931 8 H 0.060 0.940 9 C 0.517 3.483 10 O -0.528 6.528 11 N -0.710 5.710 12 C 0.132 3.868 13 H 0.088 0.912 14 C -0.154 4.154 15 C 0.152 3.848 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.128 3.872 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.021 0.979 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.010 0.990 42 H 0.252 0.748 43 H 0.031 0.969 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.685 10.637 10.166 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.043 4.043 8 H 0.078 0.922 9 C 0.302 3.698 10 O -0.404 6.404 11 N -0.361 5.361 12 C 0.027 3.973 13 H 0.106 0.894 14 C -0.193 4.193 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.001 3.999 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 10.389 10.030 11.130 18.232 hybrid contribution -1.023 0.677 -1.731 2.121 sum 9.367 10.707 9.399 17.051 Atomic orbital electron populations 1.22593 0.86408 1.04501 0.99869 1.61658 1.08415 1.12693 1.41664 1.22141 0.95614 0.88935 1.00581 1.21610 0.94466 1.00065 0.99475 1.21580 1.00082 0.95324 0.98746 1.21537 0.91687 0.97880 1.03330 1.21607 0.96364 0.92609 0.93698 0.92236 1.20303 0.79173 0.86804 0.83558 1.90650 1.45674 1.72263 1.31814 1.46019 1.60748 1.16991 1.12366 1.21980 0.94000 0.81741 0.99593 0.89403 1.23419 0.99230 0.99283 0.97348 1.22028 0.82304 0.99982 0.92965 1.44510 1.02879 1.83194 1.02397 1.19096 0.84395 1.40672 0.90721 0.90534 1.24766 0.97232 1.02282 0.96396 1.69781 1.23120 1.55529 1.08854 0.86068 0.82515 0.77397 0.79513 1.21702 1.21627 1.20678 1.21682 0.92878 0.97926 0.87388 0.89042 0.91439 0.96066 0.90452 0.94940 0.90907 0.91484 0.91316 0.91985 0.90369 0.90872 0.76696 0.91711 0.90626 0.87416 0.97216 0.93767 0.95132 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.10 60.06 0.55 0.74 16 2 N -0.52 -6.76 4.51 -236.33 -1.07 -7.83 16 3 C 0.06 0.56 5.46 -3.83 -0.02 0.53 16 4 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 5 C -0.12 -1.02 6.00 -26.61 -0.16 -1.18 16 6 C -0.11 -1.12 5.36 -26.65 -0.14 -1.26 16 7 C 0.07 0.89 2.24 -68.87 -0.15 0.74 16 8 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 9 C 0.52 8.27 6.25 -10.98 -0.07 8.20 16 10 O -0.53 -10.15 14.23 5.56 0.08 -10.07 16 11 N -0.71 -11.29 5.10 -52.03 -0.27 -11.56 16 12 C 0.13 2.38 3.28 -66.10 -0.22 2.16 16 13 H 0.09 1.58 7.62 -51.93 -0.40 1.18 16 14 C -0.15 -2.77 6.69 -24.32 -0.16 -2.93 16 15 C 0.15 3.54 5.88 -2.26 -0.01 3.52 16 16 N -0.60 -15.37 3.40 -169.77 -0.58 -15.95 16 17 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.47 10.09 55.49 0.56 -25.91 16 21 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.13 2.80 6.98 -3.06 -0.02 2.78 16 26 H 0.09 1.50 5.64 -51.93 -0.29 1.20 16 27 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.03 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 5.77 8.63 -40.82 -0.35 5.41 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.11 2.85 5.87 -51.93 -0.30 2.54 16 41 H 0.01 0.24 8.14 -51.94 -0.42 -0.18 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.02 0.54 8.04 -51.93 -0.42 0.13 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -31.26 341.25 -9.62 -40.88 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.65 Total: 2.88 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.83 Total: 5.39 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -1.35 Total: -61.25 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.26 -9.62 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014956290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.865 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds