Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46847 * 110.99887 * 2 1 4 4 C 1.53036 * 109.51868 * 185.83933 * 3 2 1 5 5 C 1.53121 * 109.28310 * 300.82228 * 4 3 2 6 6 C 1.53115 * 109.15641 * 57.65258 * 5 4 3 7 7 C 1.46842 * 110.99872 * 124.21474 * 2 1 3 8 8 H 1.09001 * 109.46046 * 294.16251 * 7 2 1 9 9 C 1.50697 * 109.46466 * 54.14048 * 7 2 1 10 10 O 1.21278 * 119.99966 * 20.00426 * 9 7 2 11 11 N 1.34782 * 120.00091 * 199.99688 * 9 7 2 12 12 C 1.46496 * 120.00001 * 180.02562 * 11 9 7 13 13 H 1.09001 * 110.78109 * 31.76357 * 12 11 9 14 14 C 1.55158 * 110.72089 * 155.00143 * 12 11 9 15 15 C 1.54908 * 101.58024 * 153.86367 * 14 12 11 16 16 N 1.47426 * 104.92948 * 322.93552 * 15 14 12 17 17 C 1.36940 * 125.64782 * 204.15046 * 16 15 14 18 18 H 1.07998 * 120.00050 * 161.52040 * 17 16 15 19 19 C 1.38813 * 119.99845 * 341.52923 * 17 16 15 20 20 N 1.31625 * 119.99502 * 157.60351 * 19 17 16 21 21 Si 1.86792 * 120.00162 * 337.60447 * 19 17 16 22 22 H 1.48498 * 109.47196 * 84.54220 * 21 19 17 23 23 H 1.48510 * 109.47106 * 204.53762 * 21 19 17 24 24 H 1.48492 * 109.47267 * 324.53766 * 21 19 17 25 25 C 1.47283 * 108.55833 * 24.15781 * 16 15 14 26 26 H 1.09004 * 109.46537 * 295.78847 * 1 2 3 27 27 H 1.08996 * 109.46990 * 55.78594 * 1 2 3 28 28 H 1.08995 * 109.47377 * 175.78851 * 1 2 3 29 29 H 1.08993 * 109.46803 * 305.85416 * 3 2 1 30 30 H 1.09004 * 109.46262 * 65.84058 * 3 2 1 31 31 H 1.09001 * 109.50467 * 60.76935 * 4 3 2 32 32 H 1.09010 * 109.50290 * 180.84200 * 4 3 2 33 33 H 1.08993 * 109.52494 * 177.55985 * 5 4 3 34 34 H 1.09009 * 109.51993 * 297.75208 * 5 4 3 35 35 H 1.09003 * 109.50378 * 182.40314 * 6 5 4 36 36 H 1.09001 * 109.50084 * 62.29195 * 6 5 4 37 37 H 0.96996 * 119.99780 * 0.02562 * 11 9 7 38 38 H 1.08995 * 111.00138 * 35.79096 * 14 12 11 39 39 H 1.08996 * 111.03892 * 271.95354 * 14 12 11 40 40 H 1.09001 * 110.37003 * 81.82903 * 15 14 12 41 41 H 1.09001 * 110.36869 * 204.04618 * 15 14 12 42 42 H 0.97002 * 119.99552 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.86001 * 239.49686 * 25 16 15 44 44 H 1.09000 * 110.00602 * 118.42786 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1189 0.5368 1.0143 6 6 3.5181 -0.8715 1.0207 7 6 1.9953 -0.7708 1.1336 8 1 1.7327 -0.2708 2.0659 9 6 1.3982 -2.1544 1.1205 10 8 0.9165 -2.5973 0.0993 11 7 1.3996 -2.8998 2.2434 12 6 0.8197 -4.2450 2.2305 13 1 0.9444 -4.7105 1.2528 14 6 1.4498 -5.1252 3.3420 15 6 0.3164 -6.1467 3.6097 16 7 -0.9312 -5.3715 3.4829 17 6 -2.1303 -5.6886 4.0634 18 1 -2.8958 -4.9341 4.1681 19 6 -2.3617 -6.9799 4.5173 20 7 -3.2758 -7.1996 5.4385 21 14 -1.3759 -8.4055 3.8208 22 1 -0.0887 -8.5212 4.5521 23 1 -2.1484 -9.6642 3.9763 24 1 -1.1071 -8.1645 2.3804 25 6 -0.6709 -4.2008 2.6280 26 1 -0.3632 0.4471 0.9254 27 1 -0.3633 0.5778 -0.8498 28 1 -0.3634 -1.0248 -0.0755 29 1 1.5636 1.9258 -0.8329 30 1 1.7328 1.8608 0.9377 31 1 3.7814 0.8568 -1.0907 32 1 3.9100 2.3512 -0.1317 33 1 5.1998 0.4712 0.8904 34 1 3.8888 1.0353 1.9560 35 1 3.9099 -1.4304 1.8706 36 1 3.7814 -1.3836 0.0952 37 1 1.7847 -2.5455 3.0601 38 1 1.6629 -4.5355 4.2335 39 1 2.3493 -5.6250 2.9825 40 1 0.3433 -6.9460 2.8691 41 1 0.4065 -6.5586 4.6149 42 1 -3.4378 -8.1020 5.7554 43 1 -0.8802 -3.2849 3.1806 44 1 -1.2942 -4.2453 1.7349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014956291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -2.859021 kcal Electronic energy + Delta-G solvation = -22970.962482 eV Core-core repulsion = 19730.889958 eV Total energy + Delta-G solvation = -3240.072524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46258 -38.53154 -37.24498 -34.28047 -33.58401 -32.21638 -31.32743 -29.52239 -27.93780 -26.90175 -24.70017 -23.71562 -23.05231 -21.17577 -20.82611 -19.96843 -19.83361 -17.44217 -16.84766 -16.34249 -15.60885 -15.30940 -15.25278 -14.96279 -14.56129 -14.36350 -14.08199 -13.50758 -13.37343 -13.21290 -13.08028 -12.73369 -12.39216 -12.29529 -11.94787 -11.84695 -11.64446 -11.46572 -11.29016 -11.11864 -11.02226 -10.97173 -10.73428 -10.69268 -10.12531 -10.03563 -9.53576 -9.42458 -8.91168 -8.64886 -8.47576 -7.05649 -5.94854 -3.25474 2.67086 3.07165 3.33873 3.49105 3.52036 3.77009 4.44946 4.50605 4.54822 4.62284 4.83326 4.85821 4.95169 5.00249 5.08565 5.20395 5.28879 5.33018 5.34608 5.40449 5.40662 5.50950 5.53072 5.60899 5.64840 5.80203 5.81612 5.85627 5.94917 6.03804 6.07205 6.15593 6.37813 6.52605 6.56522 6.71654 6.73985 6.85554 6.89384 7.61515 7.69673 8.30181 8.34338 8.82626 9.68089 10.16017 11.21264 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.003703 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.068764 B = 7559.405938 C = 7897.987080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.070 3.930 8 H 0.060 0.940 9 C 0.515 3.485 10 O -0.520 6.520 11 N -0.717 5.717 12 C 0.131 3.869 13 H 0.097 0.903 14 C -0.136 4.136 15 C 0.112 3.888 16 N -0.608 5.608 17 C -0.241 4.241 18 H 0.092 0.908 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.883 3.117 22 H -0.285 1.285 23 H -0.302 1.302 24 H -0.276 1.276 25 C 0.127 3.873 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.398 0.602 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.263 0.737 43 H 0.034 0.966 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.385 16.787 -7.697 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.042 4.042 8 H 0.078 0.922 9 C 0.300 3.700 10 O -0.394 6.394 11 N -0.369 5.369 12 C 0.026 3.974 13 H 0.115 0.885 14 C -0.175 4.175 15 C -0.014 4.014 16 N -0.335 5.335 17 C -0.368 4.368 18 H 0.110 0.890 19 C -0.177 4.177 20 N -0.553 5.553 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.230 1.230 24 H -0.201 1.201 25 C 0.001 3.999 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.984 16.104 -8.747 24.317 hybrid contribution 0.242 -0.337 0.834 0.931 sum 16.226 15.767 -7.913 23.969 Atomic orbital electron populations 1.22612 0.86288 1.04583 0.99960 1.61650 1.08492 1.12798 1.41571 1.22142 0.95621 0.88815 1.00637 1.21621 0.94451 1.00130 0.99502 1.21577 1.00149 0.95237 0.98737 1.21546 0.91609 0.97954 1.03397 1.21603 0.96416 0.92392 0.93776 0.92216 1.20386 0.79163 0.86865 0.83554 1.90688 1.44815 1.72177 1.31752 1.46037 1.61315 1.16964 1.12568 1.22054 0.93934 0.81269 1.00135 0.88496 1.23027 0.98320 0.98204 0.97925 1.21946 0.85682 0.93752 1.00007 1.44800 1.06422 1.26134 1.56175 1.18638 0.91311 0.95321 1.31529 0.89047 1.24999 0.97264 0.97098 0.98339 1.69845 1.36041 1.21277 1.28099 0.86981 0.78873 0.82691 0.80172 1.21171 1.22964 1.20147 1.21719 0.92630 0.91603 0.93974 0.96061 0.91302 0.88990 0.90357 0.94923 0.90853 0.91417 0.91275 0.92009 0.90899 0.90299 0.76777 0.90694 0.90991 0.95436 0.91873 0.92683 0.94772 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.10 60.07 0.55 0.71 16 2 N -0.52 -6.02 4.51 -236.33 -1.07 -7.09 16 3 C 0.06 0.49 5.46 -3.83 -0.02 0.46 16 4 C -0.12 -0.87 6.09 -26.65 -0.16 -1.04 16 5 C -0.12 -0.84 6.00 -26.61 -0.16 -1.00 16 6 C -0.11 -0.95 5.35 -26.65 -0.14 -1.09 16 7 C 0.07 0.77 2.24 -68.88 -0.15 0.61 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 9 C 0.52 7.27 6.27 -10.98 -0.07 7.20 16 10 O -0.52 -9.39 14.17 5.56 0.08 -9.31 16 11 N -0.72 -9.46 5.10 -52.03 -0.27 -9.73 16 12 C 0.13 2.17 3.32 -66.10 -0.22 1.95 16 13 H 0.10 1.73 7.55 -51.93 -0.39 1.34 16 14 C -0.14 -2.15 6.71 -24.58 -0.17 -2.32 16 15 C 0.11 2.39 4.69 -2.53 -0.01 2.38 16 16 N -0.61 -14.89 3.22 -169.86 -0.55 -15.44 16 17 C -0.24 -6.94 10.58 -15.06 -0.16 -7.10 16 18 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 19 C 0.02 0.63 5.43 -17.43 -0.09 0.54 16 20 N -0.91 -28.22 13.97 55.49 0.78 -27.44 16 21 Si 0.88 22.73 24.27 -169.99 -4.13 18.60 16 22 H -0.28 -6.94 6.48 56.52 0.37 -6.57 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 H -0.28 -7.07 6.65 56.52 0.38 -6.70 16 25 C 0.13 2.63 7.01 -2.92 -0.02 2.61 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.09 1.38 5.62 -51.93 -0.29 1.09 16 29 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.40 4.11 8.56 -40.82 -0.35 3.76 16 38 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.62 5.57 -51.93 -0.29 0.33 16 41 H 0.06 1.42 6.63 -51.93 -0.34 1.08 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 43 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -33.42 335.82 -8.53 -41.95 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.61 Total: -0.52 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.83 Total: 3.91 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -1.10 Total: -59.69 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.13 Total: 18.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.42 -8.53 -41.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014956291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.092 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds