Wall clock time and date at job start Tue Mar 31 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46839 * 111.00197 * 2 1 4 4 C 1.53038 * 109.52644 * 174.15653 * 3 2 1 5 5 C 1.53117 * 109.27965 * 59.17653 * 4 3 2 6 6 C 1.53127 * 109.15854 * 302.34995 * 5 4 3 7 7 C 1.46847 * 111.00346 * 235.78253 * 2 1 3 8 8 H 1.09006 * 109.44681 * 65.83476 * 7 2 1 9 9 C 1.50696 * 109.46379 * 305.86322 * 7 2 1 10 10 O 1.21289 * 119.99909 * 339.94193 * 9 7 2 11 11 N 1.34779 * 120.00158 * 159.94590 * 9 7 2 12 12 C 1.46496 * 119.99871 * 179.97438 * 11 9 7 13 13 H 1.08993 * 110.78380 * 36.78363 * 12 11 9 14 14 C 1.55165 * 110.71696 * 160.02159 * 12 11 9 15 15 C 1.54915 * 101.57980 * 153.86336 * 14 12 11 16 16 N 1.47425 * 104.83334 * 322.99105 * 15 14 12 17 17 C 1.36936 * 125.64929 * 204.09758 * 16 15 14 18 18 H 1.08003 * 119.99909 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99697 * 0.03486 * 17 16 15 20 20 N 1.31617 * 120.00113 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99553 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47589 * 60.00049 * 21 19 17 23 23 H 1.48501 * 109.46964 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47018 * 299.99910 * 21 19 17 25 25 C 1.47022 * 108.70334 * 24.12789 * 16 15 14 26 26 H 1.08995 * 109.47495 * 184.20731 * 1 2 3 27 27 H 1.09001 * 109.47314 * 304.21714 * 1 2 3 28 28 H 1.09001 * 109.46637 * 64.21279 * 1 2 3 29 29 H 1.09000 * 109.46779 * 54.14175 * 3 2 1 30 30 H 1.09002 * 109.45434 * 294.16489 * 3 2 1 31 31 H 1.09001 * 109.49889 * 299.23917 * 4 3 2 32 32 H 1.09001 * 109.53956 * 179.13741 * 4 3 2 33 33 H 1.08998 * 109.52887 * 182.44704 * 5 4 3 34 34 H 1.09005 * 109.57488 * 62.27991 * 5 4 3 35 35 H 1.08997 * 109.50432 * 297.70695 * 6 5 4 36 36 H 1.09005 * 109.53369 * 177.61412 * 6 5 4 37 37 H 0.96996 * 119.99898 * 359.97438 * 11 9 7 38 38 H 1.08995 * 111.00547 * 271.93668 * 14 12 11 39 39 H 1.09001 * 111.00003 * 35.79247 * 14 12 11 40 40 H 1.08997 * 110.36462 * 204.15099 * 15 14 12 41 41 H 1.08999 * 110.46102 * 81.87572 * 15 14 12 42 42 H 0.97003 * 119.99386 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.88723 * 239.52626 * 25 16 15 44 44 H 1.08998 * 109.88661 * 118.35607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1189 0.5368 -1.0141 6 6 3.5182 -0.8716 -1.0206 7 6 1.9953 -0.7709 -1.1336 8 1 1.7326 -0.2708 -2.0658 9 6 1.3982 -2.1545 -1.1204 10 8 0.9172 -2.5977 -0.0990 11 7 1.3987 -2.8994 -2.2436 12 6 0.8187 -4.2446 -2.2306 13 1 -0.0639 -4.2791 -1.5921 14 6 0.4728 -4.7072 -3.6708 15 6 0.5527 -6.2478 -3.5301 16 7 1.6752 -6.4846 -2.6042 17 6 2.4189 -7.6319 -2.5285 18 1 3.2240 -7.7073 -1.8124 19 6 2.1383 -8.6979 -3.3722 20 7 1.1576 -8.6057 -4.2452 21 14 3.1524 -10.2631 -3.2684 22 1 3.0313 -10.8421 -1.9063 23 1 2.6559 -11.2419 -4.2688 24 1 4.5767 -9.9496 -3.5481 25 6 1.8633 -5.2852 -1.7749 26 1 -0.3634 -1.0248 0.0754 27 1 -0.3634 0.5779 0.8498 28 1 -0.3633 0.4471 -0.9254 29 1 1.5635 1.9257 0.8329 30 1 1.7326 1.8606 -0.9377 31 1 3.7812 0.8567 1.0908 32 1 3.9105 2.3510 0.1315 33 1 5.1999 0.4712 -0.8902 34 1 3.8898 1.0348 -1.9563 35 1 3.7813 -1.3838 -0.0951 36 1 3.9099 -1.4311 -1.8701 37 1 1.7831 -2.5448 -3.0606 38 1 -0.5321 -4.3921 -3.9515 39 1 1.2095 -4.3414 -4.3861 40 1 0.7557 -6.7070 -4.4976 41 1 -0.3738 -6.6408 -3.1115 42 1 0.9618 -9.3505 -4.8350 43 1 2.8684 -4.8889 -1.9188 44 1 1.7068 -5.5321 -0.7249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014956292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:43 Heat of formation + Delta-G solvation = -5.018572 kcal Electronic energy + Delta-G solvation = -22924.198842 eV Core-core repulsion = 19684.032673 eV Total energy + Delta-G solvation = -3240.166169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36020 -38.34817 -36.95651 -34.14939 -33.52140 -32.08355 -31.10830 -29.13448 -27.34981 -26.72058 -24.70841 -23.77430 -23.01247 -20.80630 -20.46660 -19.86796 -19.58438 -17.31944 -16.77203 -16.21114 -15.43804 -15.41514 -14.79031 -14.61839 -14.50864 -14.25052 -14.11611 -13.45993 -13.24597 -13.16045 -12.78067 -12.37440 -12.31062 -11.91751 -11.81842 -11.61286 -11.53731 -11.16344 -11.03034 -10.95373 -10.83374 -10.77225 -10.60745 -10.47053 -10.13990 -9.81830 -9.60689 -9.36514 -8.72375 -8.64641 -8.42651 -6.83199 -5.65185 -3.06551 2.78633 3.19071 3.42049 3.45988 3.47550 3.83657 4.49285 4.54819 4.60066 4.69620 4.91766 4.95234 5.03522 5.23796 5.31990 5.35469 5.37395 5.44509 5.46450 5.52371 5.54139 5.68752 5.71445 5.80463 5.82476 5.88066 5.92080 6.01537 6.14951 6.21221 6.40536 6.47803 6.57088 6.76168 6.81056 6.92226 7.04903 7.47319 7.62306 7.74044 7.84591 8.34511 8.46656 9.22443 9.83070 10.47294 11.39051 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032004 B = 0.003578 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.690186 B = 7824.143942 C = 8238.773329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.057 3.943 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.071 3.929 8 H 0.058 0.942 9 C 0.514 3.486 10 O -0.521 6.521 11 N -0.717 5.717 12 C 0.132 3.868 13 H 0.090 0.910 14 C -0.149 4.149 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.130 3.870 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.018 0.982 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.015 0.985 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 21.277 2.892 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.147 4.147 7 C -0.041 4.041 8 H 0.076 0.924 9 C 0.298 3.702 10 O -0.396 6.396 11 N -0.368 5.368 12 C 0.028 3.972 13 H 0.108 0.892 14 C -0.188 4.188 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.003 3.997 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.230 0.770 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.550 20.501 3.978 20.941 hybrid contribution 0.357 -0.225 -1.051 1.133 sum 1.907 20.277 2.927 20.576 Atomic orbital electron populations 1.22593 0.86563 1.04412 0.99737 1.61619 1.08284 1.12778 1.41821 1.22133 0.95727 0.88784 1.00475 1.21621 0.94371 1.00100 0.99628 1.21576 1.00256 0.95246 0.98575 1.21556 0.91512 0.97869 1.03725 1.21602 0.96570 0.92458 0.93440 0.92433 1.20367 0.79329 0.86782 0.83681 1.90683 1.44964 1.72569 1.31415 1.46112 1.61437 1.16867 1.12381 1.22078 0.96491 0.80033 0.98603 0.89236 1.23322 1.00246 1.01205 0.94058 1.21935 0.89642 0.87384 0.98223 1.44448 1.36696 1.12060 1.39820 1.19054 1.09916 0.90136 1.15838 0.90515 1.24779 0.98747 0.98418 0.98735 1.69759 1.31657 1.31210 1.24711 0.86129 0.79340 0.82679 0.77222 1.21175 1.21560 1.21172 1.21593 0.95639 0.87784 0.94720 0.89094 0.91379 0.96307 0.90436 0.95038 0.90800 0.91454 0.91224 0.92098 0.90175 0.90738 0.76952 0.91802 0.91682 0.87209 0.96683 0.93667 0.95723 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.10 60.06 0.55 0.72 16 2 N -0.52 -6.26 4.51 -236.33 -1.07 -7.32 16 3 C 0.06 0.51 5.46 -3.84 -0.02 0.49 16 4 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 5 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 6 C -0.11 -1.14 5.36 -26.65 -0.14 -1.28 16 7 C 0.07 0.84 2.24 -68.88 -0.15 0.69 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.51 7.82 6.26 -10.99 -0.07 7.75 16 10 O -0.52 -9.99 14.26 5.55 0.08 -9.91 16 11 N -0.72 -10.50 5.13 -52.03 -0.27 -10.76 16 12 C 0.13 2.42 3.23 -66.09 -0.21 2.21 16 13 H 0.09 1.75 7.70 -51.93 -0.40 1.35 16 14 C -0.15 -2.71 6.69 -24.57 -0.16 -2.88 16 15 C 0.15 3.70 5.89 -2.53 -0.01 3.68 16 16 N -0.60 -15.78 3.39 -170.07 -0.58 -16.36 16 17 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 18 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 21 Si 0.92 22.24 29.55 -169.99 -5.02 17.22 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.13 2.89 6.99 -3.06 -0.02 2.87 16 26 H 0.09 1.32 5.63 -51.93 -0.29 1.03 16 27 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 4.70 8.52 -40.82 -0.35 4.35 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 40 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.02 0.55 8.03 -51.93 -0.42 0.13 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -32.11 341.10 -9.62 -41.73 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.64 Total: 1.48 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.83 Total: 5.13 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -1.35 Total: -60.79 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.11 -9.62 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014956292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.714 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds