Wall clock time and date at job start Tue Mar 31 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 110.99833 * 2 1 4 4 C 1.53034 * 109.52263 * 185.83813 * 3 2 1 5 5 C 1.53120 * 109.27938 * 300.81855 * 4 3 2 6 6 C 1.53117 * 109.14859 * 57.65960 * 5 4 3 7 7 C 1.46847 * 110.99818 * 124.20557 * 2 1 3 8 8 H 1.08997 * 109.46493 * 294.16700 * 7 2 1 9 9 C 1.50699 * 109.46253 * 54.15076 * 7 2 1 10 10 O 1.21285 * 120.00101 * 20.01626 * 9 7 2 11 11 N 1.34776 * 119.99774 * 200.02032 * 9 7 2 12 12 C 1.46506 * 120.00091 * 179.97438 * 11 9 7 13 13 H 1.09008 * 110.77731 * 323.21603 * 12 11 9 14 14 C 1.55153 * 110.72367 * 199.97702 * 12 11 9 15 15 C 1.55131 * 101.48647 * 205.96729 * 14 12 11 16 16 N 1.47426 * 104.71847 * 37.29562 * 15 14 12 17 17 C 1.36945 * 125.64675 * 155.81671 * 16 15 14 18 18 H 1.07997 * 119.99756 * 179.68946 * 17 16 15 19 19 C 1.38805 * 119.99878 * 359.68852 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47026 * 108.70569 * 335.55014 * 16 15 14 26 26 H 1.08997 * 109.47327 * 295.79058 * 1 2 3 27 27 H 1.09004 * 109.47306 * 55.79149 * 1 2 3 28 28 H 1.09007 * 109.46823 * 175.79329 * 1 2 3 29 29 H 1.09002 * 109.46053 * 305.85571 * 3 2 1 30 30 H 1.09001 * 109.46278 * 65.83134 * 3 2 1 31 31 H 1.09002 * 109.50185 * 60.76341 * 4 3 2 32 32 H 1.08997 * 109.50407 * 180.83664 * 4 3 2 33 33 H 1.08999 * 109.52461 * 177.55933 * 5 4 3 34 34 H 1.09005 * 109.52195 * 297.68777 * 5 4 3 35 35 H 1.09010 * 109.49076 * 182.39302 * 6 5 4 36 36 H 1.08999 * 109.51381 * 62.28092 * 6 5 4 37 37 H 0.96997 * 120.00394 * 0.02562 * 11 9 7 38 38 H 1.08999 * 111.00098 * 324.21103 * 14 12 11 39 39 H 1.08999 * 111.00564 * 88.05752 * 14 12 11 40 40 H 1.08994 * 110.50226 * 278.45550 * 15 14 12 41 41 H 1.09001 * 110.34274 * 156.05220 * 15 14 12 42 42 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.87851 * 120.70448 * 25 16 15 44 44 H 1.08997 * 109.87950 * 241.87026 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5180 1.3342 -0.1467 5 6 4.1187 0.5371 1.0144 6 6 3.5180 -0.8714 1.0206 7 6 1.9952 -0.7707 1.1338 8 1 1.7326 -0.2707 2.0660 9 6 1.3982 -2.1544 1.1207 10 8 0.9168 -2.5975 0.0994 11 7 1.3992 -2.8994 2.2438 12 6 0.8184 -4.2443 2.2312 13 1 -0.0649 -4.2781 1.5933 14 6 0.4734 -4.7068 3.6715 15 6 0.5487 -6.2496 3.5268 16 7 1.6738 -6.4848 2.6036 17 6 2.4167 -7.6326 2.5271 18 1 3.2209 -7.7085 1.8102 19 6 2.1362 -8.6985 3.3708 20 7 1.1558 -8.6062 4.2442 21 14 3.1493 -10.2644 3.2659 22 1 2.6531 -11.2429 4.2667 23 1 3.0264 -10.8431 1.9039 24 1 4.5740 -9.9519 3.5443 25 6 1.8619 -5.2854 1.7744 26 1 -0.3634 0.4471 0.9253 27 1 -0.3634 0.5778 -0.8499 28 1 -0.3633 -1.0250 -0.0754 29 1 1.5633 1.9257 -0.8330 30 1 1.7325 1.8608 0.9376 31 1 3.7813 0.8568 -1.0906 32 1 3.9097 2.3513 -0.1318 33 1 5.1997 0.4715 0.8906 34 1 3.8895 1.0362 1.9560 35 1 3.9100 -1.4302 1.8705 36 1 3.7812 -1.3835 0.0951 37 1 1.7838 -2.5449 3.0607 38 1 1.2109 -4.3416 4.3862 39 1 -0.5311 -4.3911 3.9532 40 1 -0.3771 -6.6389 3.1035 41 1 0.7485 -6.7115 4.4937 42 1 0.9596 -9.3512 4.8336 43 1 2.8675 -4.8898 1.9175 44 1 1.7044 -5.5322 0.7245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014956293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:45 Heat of formation + Delta-G solvation = -4.933325 kcal Electronic energy + Delta-G solvation = -22923.875398 eV Core-core repulsion = 19683.712925 eV Total energy + Delta-G solvation = -3240.162473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36006 -38.34619 -36.95269 -34.14896 -33.52114 -32.08226 -31.10720 -29.12714 -27.34446 -26.71801 -24.70915 -23.77453 -23.01193 -20.80523 -20.47021 -19.86522 -19.58410 -17.31774 -16.77144 -16.21093 -15.43808 -15.41476 -14.79102 -14.61810 -14.50804 -14.24977 -14.11491 -13.45943 -13.24573 -13.15989 -12.78015 -12.37723 -12.30938 -11.91266 -11.81653 -11.61032 -11.53727 -11.16333 -11.03013 -10.95421 -10.83297 -10.77289 -10.60691 -10.47040 -10.13935 -9.81861 -9.60519 -9.36295 -8.72364 -8.64895 -8.42683 -6.83188 -5.65043 -3.06686 2.78714 3.19134 3.42044 3.45978 3.47540 3.83720 4.49259 4.54829 4.60090 4.69613 4.91819 4.95280 5.03554 5.23826 5.32008 5.35638 5.37412 5.44612 5.46500 5.52399 5.53952 5.68777 5.71458 5.80563 5.82556 5.88101 5.92044 6.01533 6.14966 6.21498 6.39979 6.47905 6.56920 6.76177 6.81066 6.92216 7.04965 7.47131 7.62338 7.74096 7.84593 8.34706 8.46726 9.22438 9.83057 10.47211 11.39001 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032008 B = 0.003577 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.560653 B = 7824.871261 C = 8239.197215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.057 3.943 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.071 3.929 8 H 0.058 0.942 9 C 0.514 3.486 10 O -0.521 6.521 11 N -0.717 5.717 12 C 0.132 3.868 13 H 0.089 0.911 14 C -0.149 4.149 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.916 3.084 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.130 3.870 26 H 0.018 0.982 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.397 0.603 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.111 0.889 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 21.266 -2.886 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.147 4.147 7 C -0.041 4.041 8 H 0.076 0.924 9 C 0.298 3.702 10 O -0.396 6.396 11 N -0.368 5.368 12 C 0.028 3.972 13 H 0.108 0.892 14 C -0.188 4.188 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.746 3.254 22 H -0.216 1.216 23 H -0.212 1.212 24 H -0.212 1.212 25 C 0.003 3.997 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.555 20.491 -3.972 20.930 hybrid contribution 0.353 -0.223 1.044 1.124 sum 1.908 20.268 -2.928 20.568 Atomic orbital electron populations 1.22595 0.86568 1.04415 0.99736 1.61628 1.08286 1.12778 1.41799 1.22136 0.95730 0.88786 1.00475 1.21621 0.94373 1.00099 0.99633 1.21574 1.00257 0.95246 0.98575 1.21556 0.91513 0.97865 1.03720 1.21603 0.96572 0.92462 0.93440 0.92429 1.20365 0.79332 0.86780 0.83680 1.90682 1.44953 1.72573 1.31425 1.46115 1.61408 1.16887 1.12391 1.22081 0.96480 0.80037 0.98613 0.89248 1.23357 1.00232 1.01219 0.94040 1.21994 0.89559 0.87381 0.98272 1.44459 1.36551 1.12049 1.39975 1.19054 1.09974 0.90136 1.15763 0.90517 1.24779 0.98754 0.98422 0.98729 1.69754 1.31663 1.31196 1.24736 0.86127 0.79336 0.82681 0.77220 1.21559 1.21178 1.21170 1.21594 0.95656 0.87787 0.94699 0.96306 0.91380 0.89090 0.90437 0.95036 0.90803 0.91458 0.91224 0.92097 0.90739 0.90167 0.76953 0.91661 0.91831 0.96688 0.87129 0.93665 0.95700 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.10 60.06 0.55 0.72 16 2 N -0.52 -6.26 4.51 -236.33 -1.07 -7.32 16 3 C 0.06 0.51 5.46 -3.84 -0.02 0.49 16 4 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 5 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 6 C -0.11 -1.14 5.35 -26.65 -0.14 -1.28 16 7 C 0.07 0.84 2.24 -68.88 -0.15 0.69 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.51 7.82 6.26 -10.99 -0.07 7.75 16 10 O -0.52 -9.99 14.26 5.55 0.08 -9.91 16 11 N -0.72 -10.50 5.13 -52.03 -0.27 -10.77 16 12 C 0.13 2.42 3.23 -66.10 -0.21 2.21 16 13 H 0.09 1.75 7.71 -51.92 -0.40 1.35 16 14 C -0.15 -2.72 6.71 -24.46 -0.16 -2.88 16 15 C 0.15 3.69 5.91 -2.41 -0.01 3.68 16 16 N -0.60 -15.78 3.39 -169.93 -0.58 -16.36 16 17 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.90 10.08 55.49 0.56 -26.34 16 21 Si 0.92 22.24 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 C 0.13 2.89 6.99 -3.06 -0.02 2.87 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.09 1.32 5.62 -51.92 -0.29 1.03 16 29 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.40 4.70 8.52 -40.82 -0.35 4.36 16 38 H 0.06 1.11 8.00 -51.93 -0.42 0.70 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 2.96 5.86 -51.93 -0.30 2.66 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 43 H 0.03 0.55 8.03 -51.93 -0.42 0.13 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -32.10 341.10 -9.62 -41.72 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.64 Total: 1.51 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.83 Total: 5.12 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -1.35 Total: -60.79 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.10 -9.62 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014956293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.783 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds