Wall clock time and date at job start Tue Mar 31 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46850 * 111.00109 * 2 1 4 4 C 1.53032 * 109.52300 * 185.83961 * 3 2 1 5 5 C 1.53121 * 109.27787 * 300.81918 * 4 3 2 6 6 C 1.50701 * 109.52469 * 177.56016 * 5 4 3 7 7 O 1.21287 * 119.99974 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00013 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.88752 * 328.88897 * 9 8 6 11 11 C 1.55159 * 111.00683 * 205.00586 * 9 8 6 12 12 C 1.54320 * 102.94349 * 206.39051 * 11 9 8 13 13 N 1.47018 * 107.27210 * 22.19183 * 12 11 9 14 14 C 1.36945 * 125.64695 * 181.02594 * 13 12 11 15 15 H 1.08000 * 119.99441 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00031 * 0.02562 * 14 13 12 17 17 N 1.31619 * 120.00283 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99811 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46677 * 60.00366 * 18 16 14 20 20 H 1.48501 * 109.47050 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47416 * 300.00359 * 18 16 14 22 22 C 1.47421 * 108.70379 * 1.28563 * 13 12 11 23 23 C 1.53117 * 109.16276 * 57.65656 * 5 4 3 24 24 C 1.46847 * 111.00078 * 124.20981 * 2 1 3 25 25 H 1.08998 * 109.46980 * 60.00042 * 1 2 3 26 26 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47169 * 300.00119 * 1 2 3 28 28 H 1.08999 * 109.45961 * 65.81991 * 3 2 1 29 29 H 1.09000 * 109.45431 * 305.85043 * 3 2 1 30 30 H 1.09001 * 109.50065 * 180.88450 * 4 3 2 31 31 H 1.08995 * 109.50819 * 60.76029 * 4 3 2 32 32 H 1.09005 * 109.52606 * 297.68829 * 5 4 3 33 33 H 0.97001 * 119.99971 * 0.02562 * 8 6 5 34 34 H 1.08996 * 110.71852 * 88.02553 * 11 9 8 35 35 H 1.08999 * 110.71607 * 324.75444 * 11 9 8 36 36 H 1.09010 * 109.88205 * 262.77471 * 12 11 9 37 37 H 1.08994 * 109.88352 * 141.61405 * 12 11 9 38 38 H 0.96998 * 120.00243 * 179.97438 * 17 16 14 39 39 H 1.08996 * 110.36244 * 94.48455 * 22 13 12 40 40 H 1.08997 * 110.36930 * 216.80538 * 22 13 12 41 41 H 1.09002 * 109.50351 * 62.28525 * 23 5 4 42 42 H 1.08997 * 109.50438 * 182.40629 * 23 5 4 43 43 H 1.09004 * 109.45940 * 294.18241 * 24 2 1 44 44 H 1.09004 * 109.45993 * 54.14039 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5370 1.0144 6 6 5.6132 0.4462 0.8432 7 8 6.1469 0.9680 -0.1129 8 7 6.3569 -0.2137 1.7530 9 6 7.8097 -0.3023 1.5863 10 1 8.0800 -0.3082 0.5303 11 6 8.3779 -1.5501 2.3128 12 6 9.8319 -1.1370 2.6233 13 7 9.8801 0.3324 2.6124 14 6 10.9971 1.0959 2.8240 15 1 10.9280 2.1733 2.7956 16 6 12.2180 0.4850 3.0750 17 7 12.3023 -0.8280 3.1091 18 14 13.7418 1.5265 3.3629 19 1 13.5280 2.4002 4.5447 20 1 14.9083 0.6404 3.6063 21 1 14.0003 2.3670 2.1663 22 6 8.5256 0.8478 2.3420 23 6 3.5181 -0.8715 1.0209 24 6 1.9952 -0.7708 1.1337 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7324 1.8608 0.9376 29 1 1.5634 1.9256 -0.8331 30 1 3.9098 2.3512 -0.1309 31 1 3.7814 0.8567 -1.0905 32 1 3.8896 1.0360 1.9560 33 1 5.9302 -0.6306 2.5179 34 1 8.3559 -2.4210 1.6578 35 1 7.8272 -1.7444 3.2332 36 1 10.5014 -1.5355 1.8609 37 1 10.1216 -1.5101 3.6056 38 1 13.1556 -1.2549 3.2841 39 1 8.0105 1.0690 3.2767 40 1 8.5766 1.7385 1.7159 41 1 3.7813 -1.3836 0.0954 42 1 3.9098 -1.4302 1.8709 43 1 1.7323 -0.2708 2.0660 44 1 1.5633 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015648592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:17 Heat of formation + Delta-G solvation = -14.094050 kcal Electronic energy + Delta-G solvation = -22481.777278 eV Core-core repulsion = 19241.217566 eV Total energy + Delta-G solvation = -3240.559711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21386 -38.55216 -37.12957 -34.05842 -33.69056 -31.82220 -31.04255 -29.17335 -27.79220 -26.67164 -24.53992 -23.51937 -23.29426 -20.93877 -20.32943 -19.97650 -19.61798 -17.31430 -16.70624 -16.15663 -15.67461 -15.37192 -15.01091 -14.69607 -14.57075 -14.24314 -13.91188 -13.66370 -13.20091 -12.87739 -12.72985 -12.61405 -12.40647 -12.14561 -11.93695 -11.77943 -11.48895 -11.34802 -10.98691 -10.90471 -10.84792 -10.72712 -10.68074 -10.32250 -10.11615 -9.88363 -9.71068 -9.44877 -8.69339 -8.64521 -8.57079 -6.82493 -5.69782 -3.03367 2.83649 3.37136 3.43421 3.47084 3.48839 3.61511 4.45301 4.50371 4.54525 4.68433 4.85062 4.99593 5.04993 5.12771 5.19877 5.28523 5.32127 5.35239 5.45317 5.47611 5.53062 5.54048 5.61778 5.72559 5.76891 5.81778 5.83885 5.97521 6.20714 6.22620 6.35278 6.43751 6.62648 6.71933 6.74058 6.76748 7.01177 7.55078 7.59178 7.75181 7.83878 8.26452 8.47105 9.23451 9.83381 10.48494 11.42107 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047821 B = 0.003059 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.370328 B = 9150.565599 C = 9520.080652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.096 4.096 5 C -0.108 4.108 6 C 0.516 3.484 7 O -0.539 6.539 8 N -0.717 5.717 9 C 0.126 3.874 10 H 0.096 0.904 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.924 5.924 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.130 3.870 23 C -0.108 4.108 24 C 0.057 3.943 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.396 0.604 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.253 0.747 39 H 0.019 0.981 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.520 -1.249 -2.586 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.135 4.135 5 C -0.130 4.130 6 C 0.301 3.699 7 O -0.415 6.415 8 N -0.367 5.367 9 C 0.021 3.979 10 H 0.114 0.886 11 C -0.188 4.188 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.002 3.998 23 C -0.146 4.146 24 C -0.071 4.071 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.720 -1.140 -3.667 23.042 hybrid contribution 0.353 0.680 1.419 1.612 sum -22.367 -0.461 -2.248 22.484 Atomic orbital electron populations 1.22347 0.87272 1.02051 1.00629 1.61923 1.07522 1.14090 1.43441 1.22146 0.95657 0.88833 1.00577 1.21401 0.92911 1.00686 0.98467 1.21399 0.92003 0.98314 1.01284 1.20521 0.88862 0.78040 0.82459 1.90710 1.73890 1.45992 1.30934 1.46036 1.08145 1.55735 1.26761 1.22349 0.77488 0.97041 1.01003 0.88575 1.23176 1.00214 0.96383 0.99056 1.21141 0.88710 0.83930 1.00789 1.44390 1.02878 1.01873 1.83969 1.19030 0.85357 0.89741 1.41418 0.90458 1.24803 0.97688 0.95917 1.02069 1.69936 1.24363 1.07082 1.55801 0.86170 0.82422 0.78931 0.78076 1.21185 1.21583 1.21113 1.21856 0.87042 0.95023 0.95865 1.21586 0.94419 0.95167 1.03409 1.22087 0.95120 0.98415 0.91437 0.91326 0.91379 0.95758 0.94856 0.90408 0.90632 0.90109 0.88999 0.77038 0.91650 0.92125 0.93247 0.93648 0.93685 0.96378 0.93989 0.90303 0.90812 0.94694 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.59 60.06 0.58 0.74 16 2 N -0.54 -4.75 4.91 -242.96 -1.19 -5.94 16 3 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 4 C -0.10 -1.04 4.68 -26.65 -0.12 -1.16 16 5 C -0.11 -1.15 2.59 -91.65 -0.24 -1.38 16 6 C 0.52 7.59 7.15 -10.99 -0.08 7.51 16 7 O -0.54 -10.30 15.62 5.55 0.09 -10.21 16 8 N -0.72 -10.18 5.10 -51.61 -0.26 -10.45 16 9 C 0.13 2.32 3.44 -65.66 -0.23 2.10 16 10 H 0.10 1.98 7.54 -51.93 -0.39 1.59 16 11 C -0.15 -2.70 6.59 -24.90 -0.16 -2.86 16 12 C 0.18 4.35 5.37 -3.07 -0.02 4.33 16 13 N -0.60 -15.85 3.39 -169.94 -0.58 -16.43 16 14 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -27.38 10.31 55.49 0.57 -26.81 16 18 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.13 2.84 6.94 -2.41 -0.02 2.82 16 23 C -0.11 -0.95 5.26 -26.65 -0.14 -1.09 16 24 C 0.06 0.45 5.46 -3.83 -0.02 0.43 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 4.41 8.06 -40.82 -0.33 4.08 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 36 H 0.05 1.33 7.38 -51.92 -0.38 0.94 16 37 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 43 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -32.88 344.57 -9.69 -42.57 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.76 Total: -0.27 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.72 Total: 4.88 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -1.46 Total: -59.62 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.88 -9.69 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015648592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.474 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds