Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46850 * 111.00109 * 2 1 4 4 C 1.53032 * 109.52300 * 185.83961 * 3 2 1 5 5 C 1.53121 * 109.27787 * 300.81918 * 4 3 2 6 6 C 1.50701 * 109.52469 * 177.56016 * 5 4 3 7 7 O 1.21287 * 119.99974 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00013 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.88752 * 328.88897 * 9 8 6 11 11 C 1.55159 * 111.00683 * 205.00586 * 9 8 6 12 12 C 1.54320 * 102.94349 * 206.39051 * 11 9 8 13 13 N 1.47018 * 107.27210 * 22.19183 * 12 11 9 14 14 C 1.36945 * 125.64695 * 181.02594 * 13 12 11 15 15 H 1.08000 * 119.99441 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00031 * 0.02562 * 14 13 12 17 17 N 1.31619 * 120.00283 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99811 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46677 * 60.00366 * 18 16 14 20 20 H 1.48501 * 109.47050 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47416 * 300.00359 * 18 16 14 22 22 C 1.47421 * 108.70379 * 1.28563 * 13 12 11 23 23 C 1.53117 * 109.16276 * 57.65656 * 5 4 3 24 24 C 1.46847 * 111.00078 * 124.20981 * 2 1 3 25 25 H 1.08998 * 109.46980 * 60.00042 * 1 2 3 26 26 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47169 * 300.00119 * 1 2 3 28 28 H 1.08999 * 109.45961 * 65.81991 * 3 2 1 29 29 H 1.09000 * 109.45431 * 305.85043 * 3 2 1 30 30 H 1.09001 * 109.50065 * 180.88450 * 4 3 2 31 31 H 1.08995 * 109.50819 * 60.76029 * 4 3 2 32 32 H 1.09005 * 109.52606 * 297.68829 * 5 4 3 33 33 H 0.97001 * 119.99971 * 0.02562 * 8 6 5 34 34 H 1.08996 * 110.71852 * 88.02553 * 11 9 8 35 35 H 1.08999 * 110.71607 * 324.75444 * 11 9 8 36 36 H 1.09010 * 109.88205 * 262.77471 * 12 11 9 37 37 H 1.08994 * 109.88352 * 141.61405 * 12 11 9 38 38 H 0.96998 * 120.00243 * 179.97438 * 17 16 14 39 39 H 1.08996 * 110.36244 * 94.48455 * 22 13 12 40 40 H 1.08997 * 110.36930 * 216.80538 * 22 13 12 41 41 H 1.09002 * 109.50351 * 62.28525 * 23 5 4 42 42 H 1.08997 * 109.50438 * 182.40629 * 23 5 4 43 43 H 1.09004 * 109.45940 * 294.18241 * 24 2 1 44 44 H 1.09004 * 109.45993 * 54.14039 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5370 1.0144 6 6 5.6132 0.4462 0.8432 7 8 6.1469 0.9680 -0.1129 8 7 6.3569 -0.2137 1.7530 9 6 7.8097 -0.3023 1.5863 10 1 8.0800 -0.3082 0.5303 11 6 8.3779 -1.5501 2.3128 12 6 9.8319 -1.1370 2.6233 13 7 9.8801 0.3324 2.6124 14 6 10.9971 1.0959 2.8240 15 1 10.9280 2.1733 2.7956 16 6 12.2180 0.4850 3.0750 17 7 12.3023 -0.8280 3.1091 18 14 13.7418 1.5265 3.3629 19 1 13.5280 2.4002 4.5447 20 1 14.9083 0.6404 3.6063 21 1 14.0003 2.3670 2.1663 22 6 8.5256 0.8478 2.3420 23 6 3.5181 -0.8715 1.0209 24 6 1.9952 -0.7708 1.1337 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7324 1.8608 0.9376 29 1 1.5634 1.9256 -0.8331 30 1 3.9098 2.3512 -0.1309 31 1 3.7814 0.8567 -1.0905 32 1 3.8896 1.0360 1.9560 33 1 5.9302 -0.6306 2.5179 34 1 8.3559 -2.4210 1.6578 35 1 7.8272 -1.7444 3.2332 36 1 10.5014 -1.5355 1.8609 37 1 10.1216 -1.5101 3.6056 38 1 13.1556 -1.2549 3.2841 39 1 8.0105 1.0690 3.2767 40 1 8.5766 1.7385 1.7159 41 1 3.7813 -1.3836 0.0954 42 1 3.9098 -1.4302 1.8709 43 1 1.7323 -0.2708 2.0660 44 1 1.5633 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015648592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = -37.812530 kcal Electronic energy + Delta-G solvation = -22482.805788 eV Core-core repulsion = 19241.217566 eV Total energy + Delta-G solvation = -3241.588222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31922 -39.59435 -38.66740 -35.63416 -34.62205 -33.61548 -31.79040 -31.00572 -29.12109 -27.84914 -26.40017 -24.38050 -24.04430 -22.27387 -21.94109 -21.46628 -20.56272 -19.04297 -18.11611 -17.42245 -16.77055 -16.58459 -16.04067 -16.01758 -15.79532 -15.54020 -15.21870 -14.70332 -14.32407 -14.25431 -14.11628 -13.83188 -13.65811 -13.33935 -13.27826 -12.97176 -12.74731 -12.54568 -12.39827 -12.22020 -12.12266 -12.10907 -12.08750 -11.82150 -11.66429 -11.58686 -11.38339 -10.73285 -10.69714 -10.06883 -9.22629 -8.93681 -7.87812 -5.24246 1.44330 1.48214 1.54425 1.65480 2.14694 2.49674 3.03394 3.30494 3.57003 3.67574 3.74077 3.84435 3.92351 4.05380 4.18581 4.20770 4.29438 4.39584 4.48570 4.58823 4.59398 4.61920 4.72528 4.76439 4.79296 4.85768 4.92912 4.96686 4.97928 5.05983 5.08509 5.15704 5.21756 5.37244 5.40457 5.55434 5.63708 5.72198 6.15828 6.17107 6.18810 6.61759 7.07621 7.31122 7.73155 8.36542 9.22102 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047821 B = 0.003059 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.370328 B = 9150.565599 C = 9520.080652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.564 5.564 3 C 0.062 3.938 4 C -0.096 4.096 5 C -0.098 4.098 6 C 0.514 3.486 7 O -0.588 6.588 8 N -0.701 5.701 9 C 0.145 3.855 10 H 0.071 0.929 11 C -0.127 4.127 12 C 0.184 3.816 13 N -0.627 5.627 14 C -0.249 4.249 15 H 0.077 0.923 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.981 3.019 19 H -0.275 1.275 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.129 3.871 23 C -0.103 4.103 24 C 0.059 3.941 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.416 0.584 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.012 0.988 37 H 0.018 0.982 38 H 0.249 0.751 39 H 0.033 0.967 40 H 0.022 0.978 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.808 -1.482 -1.448 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.289 5.289 3 C -0.065 4.065 4 C -0.134 4.134 5 C -0.119 4.119 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.352 5.352 9 C 0.038 3.962 10 H 0.089 0.911 11 C -0.166 4.166 12 C 0.059 3.941 13 N -0.354 5.354 14 C -0.378 4.378 15 H 0.095 0.905 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.808 3.192 19 H -0.201 1.201 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.002 3.998 23 C -0.141 4.141 24 C -0.069 4.069 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.254 0.746 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.072 -1.382 -2.505 25.234 hybrid contribution 1.039 0.785 1.026 1.658 sum -24.033 -0.597 -1.479 24.086 Atomic orbital electron populations 1.22373 0.85974 1.02757 1.01077 1.61914 1.08802 1.13925 1.44273 1.22051 0.93763 0.89378 1.01346 1.21353 0.94752 0.99793 0.97496 1.21409 0.88379 0.99961 1.02139 1.21327 0.90561 0.76593 0.81349 1.90699 1.75125 1.47932 1.32970 1.45788 1.06137 1.55738 1.27580 1.21815 0.79773 0.95596 0.99008 0.91089 1.22988 0.96027 0.96603 1.00939 1.20943 0.92168 0.82981 0.98045 1.44686 1.03929 1.02808 1.83962 1.19391 0.86744 0.90251 1.41434 0.90519 1.25662 1.00573 0.97201 1.02178 1.70152 1.24641 1.08492 1.56457 0.85128 0.78459 0.77388 0.78197 1.20084 1.21583 1.20602 1.21973 0.85835 0.95569 0.96431 1.21595 0.95417 0.93639 1.03488 1.22114 0.94015 0.99157 0.91609 0.91138 0.90574 0.95055 0.93737 0.90002 0.91742 0.92590 0.86582 0.74586 0.89394 0.88837 0.96976 0.96421 0.94161 0.94883 0.95936 0.92078 0.88625 0.93480 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 127.69 1.22 1.50 16 2 N -0.56 -8.44 4.91 -922.60 -4.53 -12.97 16 3 C 0.06 0.97 5.46 86.32 0.47 1.44 16 4 C -0.10 -1.98 4.68 30.65 0.14 -1.84 16 5 C -0.10 -1.85 2.59 -11.46 -0.03 -1.88 16 6 C 0.51 14.52 7.15 87.66 0.63 15.15 16 7 O -0.59 -22.79 15.62 -3.05 -0.05 -22.84 16 8 N -0.70 -18.38 5.10 -435.59 -2.22 -20.60 16 9 C 0.14 5.20 3.44 46.46 0.16 5.36 16 10 H 0.07 2.96 7.54 -2.39 -0.02 2.94 16 11 C -0.13 -4.37 6.59 31.78 0.21 -4.16 16 12 C 0.18 9.07 5.37 86.73 0.47 9.54 16 13 N -0.63 -33.53 3.39 -691.57 -2.35 -35.88 16 14 C -0.25 -14.58 10.28 84.03 0.86 -13.72 16 15 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 16 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 17 N -0.95 -57.67 10.31 21.65 0.22 -57.44 16 18 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C 0.13 5.63 6.94 86.93 0.60 6.23 16 23 C -0.10 -1.52 5.26 30.65 0.16 -1.36 16 24 C 0.06 0.72 5.46 86.32 0.47 1.19 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 32 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.42 7.65 8.06 -92.71 -0.75 6.90 16 34 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.09 2.65 8.00 -2.39 -0.02 2.63 16 36 H 0.01 0.67 7.38 -2.38 -0.02 0.65 16 37 H 0.02 0.95 7.51 -2.39 -0.02 0.94 16 38 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 0.99 7.67 -2.39 -0.02 0.98 16 43 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 Total: -1.00 -74.33 344.57 -0.84 -75.17 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.22 Total: 11.51 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 5.84 Total: 14.25 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -8.88 Total: -126.90 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -74.33 -0.84 -75.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015648592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.358 kcal (2) G-P(sol) polarization free energy of solvation -74.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds