Wall clock time and date at job start Tue Mar 31 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46846 * 111.00749 * 2 1 4 4 C 1.53029 * 109.52679 * 185.84086 * 3 2 1 5 5 C 1.53121 * 109.27972 * 300.81801 * 4 3 2 6 6 C 1.50699 * 109.52273 * 177.55983 * 5 4 3 7 7 O 1.21279 * 120.00222 * 0.12944 * 6 5 4 8 8 N 1.34780 * 119.99483 * 180.12634 * 6 5 4 9 9 C 1.46503 * 119.99850 * 179.72677 * 8 6 5 10 10 H 1.09003 * 110.88630 * 34.29648 * 9 8 6 11 11 C 1.55152 * 111.00536 * 158.18157 * 9 8 6 12 12 C 1.54320 * 102.94303 * 153.57883 * 11 9 8 13 13 N 1.47026 * 107.26970 * 337.80287 * 12 11 9 14 14 C 1.36936 * 125.64856 * 178.99366 * 13 12 11 15 15 H 1.08003 * 120.00079 * 174.78081 * 14 13 12 16 16 C 1.38817 * 120.00151 * 354.79116 * 14 13 12 17 17 N 1.31615 * 119.99838 * 7.04897 * 16 14 13 18 18 Si 1.86796 * 120.00119 * 187.04694 * 16 14 13 19 19 H 1.48504 * 109.46925 * 94.98388 * 18 16 14 20 20 H 1.48494 * 109.47433 * 214.98790 * 18 16 14 21 21 H 1.48505 * 109.47346 * 334.98926 * 18 16 14 22 22 C 1.47465 * 108.72302 * 358.97986 * 13 12 11 23 23 C 1.53117 * 109.21156 * 57.62113 * 5 4 3 24 24 C 1.46847 * 111.00133 * 124.21281 * 2 1 3 25 25 H 1.09004 * 109.46648 * 59.99748 * 1 2 3 26 26 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46718 * 300.00461 * 1 2 3 28 28 H 1.08997 * 109.45862 * 65.81589 * 3 2 1 29 29 H 1.09000 * 109.44924 * 305.85293 * 3 2 1 30 30 H 1.09006 * 109.50430 * 180.87933 * 4 3 2 31 31 H 1.09001 * 109.50907 * 60.76307 * 4 3 2 32 32 H 1.08997 * 109.52460 * 297.68856 * 5 4 3 33 33 H 0.96999 * 120.00442 * 0.02562 * 8 6 5 34 34 H 1.09002 * 110.71925 * 271.93568 * 11 9 8 35 35 H 1.08995 * 110.72395 * 35.21334 * 11 9 8 36 36 H 1.09000 * 109.88771 * 97.22262 * 12 11 9 37 37 H 1.09003 * 109.88330 * 218.39017 * 12 11 9 38 38 H 0.96996 * 119.99926 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.34748 * 265.25317 * 22 13 12 40 40 H 1.08997 * 110.40766 * 142.91270 * 22 13 12 41 41 H 1.09000 * 109.50028 * 62.31883 * 23 5 4 42 42 H 1.08998 * 109.50514 * 182.43447 * 23 5 4 43 43 H 1.09007 * 109.45766 * 294.17414 * 24 2 1 44 44 H 1.08994 * 109.46203 * 54.13835 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1189 0.5368 1.0144 6 6 5.6134 0.4461 0.8431 7 8 6.1472 0.9693 -0.1120 8 7 6.3567 -0.2166 1.7513 9 6 7.8089 -0.3099 1.5817 10 1 8.2059 0.5969 1.1254 11 6 8.5090 -0.6044 2.9346 12 6 9.8062 -1.3208 2.5038 13 7 9.5731 -1.8765 1.1627 14 6 10.4872 -2.5717 0.4169 15 1 10.1931 -3.0128 -0.5241 16 6 11.7919 -2.7099 0.8704 17 7 12.1167 -2.2950 2.0765 18 14 13.0865 -3.4845 -0.2310 19 1 13.8256 -2.4173 -0.9522 20 1 14.0355 -4.2705 0.5976 21 1 12.4277 -4.3814 -1.2143 22 6 8.1918 -1.5617 0.7533 23 6 3.5183 -0.8717 1.0225 24 6 1.9953 -0.7708 1.1337 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7325 1.8608 0.9375 29 1 1.5635 1.9255 -0.8331 30 1 3.9101 2.3511 -0.1310 31 1 3.7815 0.8566 -1.0906 32 1 3.8898 1.0358 1.9559 33 1 5.9297 -0.6354 2.5150 34 1 8.7371 0.3227 3.4606 35 1 7.8942 -1.2585 3.5527 36 1 10.6303 -0.6081 2.4716 37 1 10.0356 -2.1247 3.2033 38 1 13.0284 -2.3912 2.3933 39 1 7.5272 -2.3922 0.9918 40 1 8.1530 -1.3376 -0.3126 41 1 3.7814 -1.3848 0.0975 42 1 3.9102 -1.4295 1.8729 43 1 1.7325 -0.2708 2.0660 44 1 1.5634 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015648593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:19 Heat of formation + Delta-G solvation = -14.052727 kcal Electronic energy + Delta-G solvation = -22557.964045 eV Core-core repulsion = 19317.406126 eV Total energy + Delta-G solvation = -3240.557920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20801 -38.54368 -37.12599 -34.05449 -33.67926 -31.82196 -31.02802 -29.17211 -27.79087 -26.67402 -24.53241 -23.50754 -23.28144 -20.91729 -20.33975 -20.03814 -19.53257 -17.30621 -16.70455 -16.20431 -15.55251 -15.36987 -14.99255 -14.79112 -14.57013 -14.17212 -13.89540 -13.66247 -13.28656 -12.73891 -12.70748 -12.63925 -12.40492 -12.18608 -11.91532 -11.78019 -11.46440 -11.33685 -10.96671 -10.91082 -10.85073 -10.74083 -10.64151 -10.32542 -10.07092 -9.88628 -9.72417 -9.44344 -8.68948 -8.62519 -8.55370 -6.81742 -5.71039 -3.03025 2.83708 3.37759 3.43643 3.48775 3.50419 3.63189 4.46274 4.52356 4.55335 4.69527 4.86454 5.00773 5.05816 5.13570 5.21589 5.28863 5.32290 5.35303 5.45336 5.49351 5.55036 5.55889 5.60434 5.73647 5.77257 5.81776 5.86645 6.00540 6.20964 6.23471 6.35431 6.43058 6.63553 6.73998 6.76099 6.78702 7.01526 7.53250 7.61050 7.75365 7.84176 8.26407 8.47450 9.23446 9.83628 10.49135 11.41416 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035757 B = 0.003197 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.873531 B = 8756.341618 C = 8929.043199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.097 4.097 5 C -0.107 4.107 6 C 0.515 3.485 7 O -0.538 6.538 8 N -0.717 5.717 9 C 0.127 3.873 10 H 0.094 0.906 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.130 3.870 23 C -0.109 4.109 24 C 0.058 3.942 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.396 0.604 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.252 0.748 39 H 0.019 0.981 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.602 5.889 2.185 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.135 4.135 5 C -0.129 4.129 6 C 0.301 3.699 7 O -0.414 6.414 8 N -0.367 5.367 9 C 0.022 3.978 10 H 0.112 0.888 11 C -0.188 4.188 12 C 0.053 3.947 13 N -0.331 5.331 14 C -0.355 4.355 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.003 3.997 23 C -0.147 4.147 24 C -0.070 4.070 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.815 5.973 1.083 22.644 hybrid contribution 0.250 -0.254 0.701 0.787 sum -21.565 5.719 1.784 22.381 Atomic orbital electron populations 1.22347 0.87259 1.02084 1.00581 1.61906 1.07518 1.14039 1.43505 1.22138 0.95651 0.88872 1.00499 1.21404 0.92924 1.00575 0.98588 1.21388 0.92005 0.98372 1.01143 1.20525 0.88879 0.78065 0.82447 1.90710 1.73775 1.46519 1.30443 1.46050 1.08262 1.55479 1.26939 1.22291 0.77854 1.00122 0.97552 0.88785 1.23166 0.99706 1.00497 0.95415 1.21150 0.90979 0.96031 0.86494 1.44408 1.08314 1.64425 1.15970 1.19082 0.89121 1.25952 1.01359 0.90362 1.24821 0.97226 1.01363 0.96990 1.69959 1.18232 1.52590 1.16176 0.86101 0.81655 0.78474 0.79595 1.21570 1.21788 1.20595 1.21826 0.87707 0.93089 0.97114 1.21596 0.94358 0.95113 1.03625 1.22083 0.95147 0.98435 0.91332 0.91330 0.91349 0.95799 0.94933 0.90428 0.90718 0.90023 0.89135 0.77051 0.91673 0.92094 0.93136 0.93795 0.93750 0.96380 0.93873 0.90164 0.90762 0.94772 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.59 60.06 0.58 0.75 16 2 N -0.54 -4.91 4.91 -242.97 -1.19 -6.10 16 3 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 4 C -0.10 -1.05 4.68 -26.65 -0.12 -1.17 16 5 C -0.11 -1.14 2.59 -91.65 -0.24 -1.38 16 6 C 0.52 7.59 7.16 -10.98 -0.08 7.51 16 7 O -0.54 -10.31 15.67 5.56 0.09 -10.22 16 8 N -0.72 -10.18 5.12 -51.73 -0.26 -10.45 16 9 C 0.13 2.33 3.37 -65.78 -0.22 2.11 16 10 H 0.09 1.93 7.63 -51.93 -0.40 1.53 16 11 C -0.15 -2.68 6.59 -24.90 -0.16 -2.85 16 12 C 0.18 4.32 5.38 -3.06 -0.02 4.31 16 13 N -0.60 -15.86 3.40 -170.04 -0.58 -16.44 16 14 C -0.23 -6.51 10.26 -15.06 -0.15 -6.66 16 15 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 16 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 17 N -0.92 -27.32 10.36 55.49 0.57 -26.75 16 18 Si 0.91 22.52 29.56 -169.99 -5.02 17.49 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.13 2.85 6.93 -2.51 -0.02 2.84 16 23 C -0.11 -1.02 5.26 -26.65 -0.14 -1.16 16 24 C 0.06 0.47 5.46 -3.83 -0.02 0.45 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.39 8.02 -40.82 -0.33 4.06 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 36 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 37 H 0.04 1.16 7.61 -51.93 -0.40 0.76 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.60 7.65 -51.93 -0.40 0.20 16 43 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -32.94 344.67 -9.68 -42.62 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.76 Total: -0.26 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.72 Total: 4.91 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -1.46 Total: -59.73 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.94 -9.68 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015648593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.568 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds