Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 110.59729 * 2 1 4 4 C 1.55099 * 110.83098 * 123.02438 * 2 1 3 5 5 C 1.54595 * 102.84787 * 155.84752 * 4 2 1 6 6 C 1.53984 * 105.22583 * 338.15442 * 5 4 2 7 7 N 1.47901 * 107.06058 * 358.72090 * 6 5 4 8 8 C 1.46907 * 110.99929 * 145.84565 * 7 6 5 9 9 C 1.50701 * 109.46879 * 65.72540 * 8 7 6 10 10 O 1.21271 * 120.00344 * 6.19779 * 9 8 7 11 11 N 1.34784 * 119.99301 * 186.19666 * 9 8 7 12 12 C 1.46504 * 119.99278 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.88830 * 328.87914 * 12 11 9 14 14 C 1.55153 * 111.00001 * 204.99988 * 12 11 9 15 15 C 1.54327 * 102.94455 * 277.42718 * 14 12 11 16 16 N 1.47020 * 107.27001 * 337.81257 * 15 14 12 17 17 C 1.36928 * 125.64842 * 178.89544 * 16 15 14 18 18 H 1.08003 * 120.00202 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00234 * 0.02562 * 17 16 15 20 20 N 1.31621 * 119.99940 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00538 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47011 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47694 * 119.99842 * 21 19 17 24 24 H 1.48503 * 109.47342 * 240.00120 * 21 19 17 25 25 C 1.47429 * 108.70251 * 358.93359 * 16 15 14 26 26 H 1.09002 * 109.47198 * 183.00362 * 1 2 3 27 27 H 1.08996 * 109.47493 * 303.00335 * 1 2 3 28 28 H 1.08998 * 109.47180 * 63.00744 * 1 2 3 29 29 H 1.09007 * 110.70940 * 37.53743 * 4 2 1 30 30 H 1.08998 * 110.81151 * 274.20661 * 4 2 1 31 31 H 1.09001 * 110.30845 * 219.18326 * 5 4 2 32 32 H 1.09005 * 110.30943 * 97.12077 * 5 4 2 33 33 H 1.09002 * 109.92164 * 118.07816 * 6 5 4 34 34 H 1.09006 * 109.91773 * 239.36782 * 6 5 4 35 35 H 1.08995 * 109.46764 * 185.72772 * 8 7 6 36 36 H 1.09001 * 109.46731 * 305.72535 * 8 7 6 37 37 H 0.96999 * 120.00215 * 0.02562 * 11 9 8 38 38 H 1.09005 * 110.72506 * 35.79189 * 14 12 11 39 39 H 1.09000 * 110.72065 * 159.06518 * 14 12 11 40 40 H 1.09006 * 109.88007 * 97.22541 * 15 14 12 41 41 H 1.08995 * 109.88117 * 218.39009 * 15 14 12 42 42 H 0.97002 * 120.00578 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.36742 * 265.29678 * 25 16 15 44 44 H 1.08996 * 110.36583 * 142.97106 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9134 1.0204 0.0000 4 6 2.0815 -0.7900 1.2154 5 6 3.4891 -1.2157 0.7386 6 6 3.4293 -1.1599 -0.7990 7 7 2.0542 -0.7571 -1.1655 8 6 2.0543 0.0745 -2.3765 9 6 2.5191 -0.7481 -3.5506 10 8 2.7127 -1.9379 -3.4187 11 7 2.7195 -0.1612 -4.7473 12 6 3.1708 -0.9610 -5.8888 13 1 3.7966 -1.7903 -5.5591 14 6 3.9165 -0.0795 -6.9252 15 6 2.7645 0.5425 -7.7425 16 7 1.5919 -0.3287 -7.5769 17 6 0.3556 -0.1158 -8.1257 18 1 -0.4444 -0.8180 -7.9433 19 6 0.1306 1.0025 -8.9166 20 7 1.1057 1.8580 -9.1393 21 14 -1.5561 1.2935 -9.6648 22 1 -2.4708 0.1935 -9.2662 23 1 -2.0968 2.5882 -9.1785 24 1 -1.4416 1.3295 -11.1449 25 6 1.9673 -1.4691 -6.7212 26 1 -0.3634 -1.0263 0.0538 27 1 -0.3634 0.5597 0.8618 28 1 -0.3633 0.4664 -0.9157 29 1 1.4629 -1.6640 1.4200 30 1 2.1493 -0.1498 2.0949 31 1 3.7111 -2.2294 1.0722 32 1 4.2415 -0.5216 1.1134 33 1 4.1432 -0.4256 -1.1721 34 1 3.6517 -2.1426 -1.2152 35 1 1.0452 0.4405 -2.5659 36 1 2.7273 0.9204 -2.2363 37 1 2.5650 0.7906 -4.8527 38 1 4.4972 0.6959 -6.4254 39 1 4.5554 -0.6906 -7.5627 40 1 2.5405 1.5409 -7.3668 41 1 3.0425 0.5939 -8.7951 42 1 0.9487 2.6394 -9.6923 43 1 2.2622 -2.3216 -7.3331 44 1 1.1398 -1.7399 -6.0655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015702929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = -5.372469 kcal Electronic energy + Delta-G solvation = -22783.823136 eV Core-core repulsion = 19543.641620 eV Total energy + Delta-G solvation = -3240.181515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.94792 -38.64583 -37.03469 -33.65801 -32.48720 -31.65230 -31.48440 -29.21166 -27.61791 -26.27055 -25.48172 -24.33608 -21.43919 -20.64210 -20.19115 -19.99217 -19.67809 -17.07860 -16.56461 -16.46130 -15.77256 -15.28218 -14.84168 -14.61572 -14.36055 -13.88913 -13.78065 -13.47743 -13.24990 -12.86291 -12.53835 -12.27398 -12.06168 -11.92568 -11.80474 -11.77771 -11.37002 -11.24752 -10.95400 -10.90741 -10.88607 -10.71048 -10.66019 -10.33712 -10.10560 -9.93968 -9.67547 -9.41916 -8.71750 -8.51834 -8.40412 -6.81733 -5.72294 -3.04647 2.98878 3.34655 3.39280 3.45679 3.47709 3.99936 4.43258 4.50218 4.59216 4.81392 5.02230 5.04900 5.19627 5.22812 5.30455 5.35197 5.42327 5.47819 5.49693 5.55944 5.61772 5.63891 5.78933 5.79835 5.85334 5.85390 6.00312 6.11169 6.16920 6.22794 6.39240 6.50057 6.55616 6.71885 6.84045 6.87163 7.11284 7.53729 7.56207 7.79621 7.96176 8.24672 8.63594 9.22140 9.82113 10.48050 11.39724 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.003918 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.607998 B = 7145.593846 C = 7914.126867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.117 4.117 5 C -0.132 4.132 6 C 0.040 3.960 7 N -0.493 5.493 8 C 0.027 3.973 9 C 0.513 3.487 10 O -0.533 6.533 11 N -0.707 5.707 12 C 0.130 3.870 13 H 0.089 0.911 14 C -0.154 4.154 15 C 0.176 3.824 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.924 5.924 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.125 3.875 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.027 0.973 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.279 -1.078 18.303 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 H 0.070 0.930 4 C -0.155 4.155 5 C -0.171 4.171 6 C -0.087 4.087 7 N -0.218 5.218 8 C -0.104 4.104 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.358 5.358 12 C 0.024 3.976 13 H 0.107 0.893 14 C -0.193 4.193 15 C 0.051 3.949 16 N -0.331 5.331 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.002 4.002 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.992 -2.248 18.125 18.934 hybrid contribution -0.469 1.536 -0.566 1.703 sum 4.523 -0.712 17.559 18.146 Atomic orbital electron populations 1.21692 0.93607 1.02691 1.01528 1.22849 0.96239 0.95614 0.90301 0.93025 1.22535 0.96169 1.00151 0.96653 1.22420 0.97210 1.01960 0.95470 1.22878 0.88914 1.02286 0.94657 1.64517 1.19643 1.36312 1.01284 1.22189 1.03131 0.94567 0.90519 1.20317 0.77624 0.88444 0.83768 1.90656 1.50803 1.15168 1.84266 1.45835 1.68133 1.12667 1.09190 1.22092 0.96375 0.93957 0.85129 0.89348 1.23221 0.99250 0.99183 0.97606 1.21163 0.83364 0.93097 0.97239 1.44492 1.08471 1.23028 1.57126 1.19116 0.86656 1.05769 1.23579 0.90492 1.24770 0.97840 0.97412 1.00522 1.69963 1.30316 1.14070 1.42876 0.86054 0.83415 0.77610 0.78772 1.20538 1.21832 1.21801 1.21943 0.94907 0.91236 0.92124 0.91650 0.92337 0.92469 0.90544 0.91182 0.90994 0.91780 0.94328 0.89083 0.87655 0.92279 0.76458 0.91707 0.91041 0.93652 0.93824 0.93902 0.95558 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.51 37.15 0.35 -0.95 16 2 C 0.06 0.59 2.91 -65.70 -0.19 0.39 16 3 H 0.05 0.49 8.02 -51.93 -0.42 0.07 16 4 C -0.12 -1.03 6.52 -24.78 -0.16 -1.19 16 5 C -0.13 -1.22 6.92 -25.38 -0.18 -1.40 16 6 C 0.04 0.49 5.65 -2.76 -0.02 0.47 16 7 N -0.49 -6.33 4.69 -223.95 -1.05 -7.38 16 8 C 0.03 0.35 5.17 -4.97 -0.03 0.33 16 9 C 0.51 8.38 7.51 -10.98 -0.08 8.30 16 10 O -0.53 -10.36 14.68 5.56 0.08 -10.28 16 11 N -0.71 -11.64 5.19 -51.73 -0.27 -11.91 16 12 C 0.13 2.35 3.43 -65.78 -0.23 2.13 16 13 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 14 C -0.15 -2.73 6.55 -24.90 -0.16 -2.90 16 15 C 0.18 4.10 5.36 -3.06 -0.02 4.08 16 16 N -0.60 -15.25 3.39 -170.08 -0.58 -15.82 16 17 C -0.22 -6.21 10.28 -15.07 -0.15 -6.36 16 18 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.64 10.31 55.49 0.57 -26.07 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.13 2.70 6.93 -2.53 -0.02 2.69 16 26 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 29 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.45 7.64 -51.93 -0.40 0.06 16 34 H 0.09 1.29 7.33 -51.93 -0.38 0.91 16 35 H 0.11 1.30 7.29 -51.93 -0.38 0.93 16 36 H 0.06 0.65 7.94 -51.93 -0.41 0.24 16 37 H 0.40 6.24 8.67 -40.82 -0.35 5.88 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 41 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -31.58 345.45 -9.68 -41.27 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.65 Total: 2.70 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.97 Total: 5.23 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -1.32 Total: -61.18 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.58 -9.68 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015702929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.895 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds