Wall clock time and date at job start Tue Mar 31 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.33684 * 2 1 4 4 C 1.54912 * 110.37607 * 122.24905 * 2 1 3 5 5 C 1.55257 * 101.60100 * 155.81735 * 4 2 1 6 6 C 1.54327 * 103.08382 * 324.49267 * 5 4 2 7 7 N 1.47443 * 107.23378 * 22.20364 * 6 5 4 8 8 C 1.46904 * 110.99638 * 123.25617 * 7 6 5 9 9 C 1.50697 * 109.46907 * 69.15887 * 8 7 6 10 10 O 1.21277 * 120.00248 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99683 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99725 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.88667 * 31.12210 * 12 11 9 14 14 C 1.55155 * 111.00361 * 155.00651 * 12 11 9 15 15 C 1.54323 * 102.94602 * 153.57472 * 14 12 11 16 16 N 1.47019 * 107.26925 * 337.80673 * 15 14 12 17 17 C 1.36941 * 125.64995 * 178.92296 * 16 15 14 18 18 H 1.07991 * 120.00068 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99558 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00214 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99768 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46966 * 60.00147 * 21 19 17 23 23 H 1.48500 * 109.47279 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47243 * 300.00099 * 21 19 17 25 25 C 1.47428 * 108.70361 * 358.93750 * 16 15 14 26 26 H 1.09002 * 109.47153 * 180.70161 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.70352 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.70334 * 1 2 3 29 29 H 1.09001 * 110.99348 * 273.99963 * 4 2 1 30 30 H 1.09006 * 110.98288 * 37.80999 * 4 2 1 31 31 H 1.08996 * 110.74107 * 206.05891 * 5 4 2 32 32 H 1.09000 * 110.60820 * 82.86364 * 5 4 2 33 33 H 1.09000 * 109.88513 * 262.79824 * 6 5 4 34 34 H 1.09003 * 109.88788 * 141.61304 * 6 5 4 35 35 H 1.09002 * 109.46405 * 189.15571 * 8 7 6 36 36 H 1.08997 * 109.47104 * 309.15336 * 8 7 6 37 37 H 0.96994 * 120.00213 * 0.02562 * 11 9 8 38 38 H 1.09006 * 110.71711 * 271.93897 * 14 12 11 39 39 H 1.09000 * 110.72557 * 35.02840 * 14 12 11 40 40 H 1.08998 * 109.88318 * 97.21937 * 15 14 12 41 41 H 1.08994 * 109.88086 * 218.38473 * 15 14 12 42 42 H 0.97004 * 119.99901 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.36849 * 265.29364 * 25 16 15 44 44 H 1.08999 * 110.36724 * 142.97171 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0693 -0.7749 1.2282 5 6 3.4786 -1.2002 0.7347 6 6 3.2536 -1.4799 -0.7662 7 7 2.0447 -0.7397 -1.1720 8 6 2.3358 0.1740 -2.2849 9 6 2.6203 -0.6257 -3.5301 10 8 2.5845 -1.8374 -3.4940 11 7 2.9144 0.0058 -4.6839 12 6 3.1914 -0.7717 -5.8944 13 1 2.6291 -1.7054 -5.8937 14 6 2.8895 0.0585 -7.1698 15 6 3.8255 -0.5721 -8.2224 16 7 4.9123 -1.2427 -7.4941 17 6 5.9420 -1.9427 -8.0642 18 1 6.6942 -2.4012 -7.4396 19 6 6.0188 -2.0629 -9.4450 20 7 5.1022 -1.5037 -10.2062 21 14 7.4230 -3.0184 -10.2226 22 1 7.3922 -4.4229 -9.7414 23 1 7.2773 -2.9976 -11.7003 24 1 8.7160 -2.3937 -9.8444 25 6 4.7099 -1.0371 -6.0483 26 1 -0.3633 -1.0276 0.0126 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 0.5247 0.8836 29 1 2.1388 -0.1248 2.1004 30 1 1.4515 -1.6472 1.4415 31 1 3.8119 -2.1016 1.2489 32 1 4.1942 -0.3896 0.8726 33 1 3.1056 -2.5479 -0.9262 34 1 4.1119 -1.1320 -1.3410 35 1 1.4763 0.8217 -2.4575 36 1 3.2055 0.7827 -2.0373 37 1 2.9433 0.9748 -4.7128 38 1 1.8462 -0.0536 -7.4649 39 1 3.1335 1.1092 -7.0129 40 1 3.2753 -1.2994 -8.8194 41 1 4.2355 0.2054 -8.8669 42 1 5.1562 -1.5874 -11.1711 43 1 5.2823 -0.1760 -5.7038 44 1 4.9969 -1.9308 -5.4942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015702930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:14 Heat of formation + Delta-G solvation = -4.418297 kcal Electronic energy + Delta-G solvation = -22452.920243 eV Core-core repulsion = 19212.780104 eV Total energy + Delta-G solvation = -3240.140139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.03884 -38.69327 -37.05936 -33.93158 -32.50950 -31.74285 -31.54592 -29.18538 -27.65332 -26.25929 -25.51219 -24.24114 -21.57359 -20.65925 -20.34321 -20.06227 -19.78168 -17.12622 -16.77177 -16.46731 -15.83881 -15.49995 -14.76554 -14.58697 -14.16747 -14.04248 -13.95276 -13.50922 -12.93009 -12.84626 -12.73647 -12.39833 -12.27713 -12.09931 -11.91528 -11.77094 -11.37454 -11.29459 -10.97648 -10.94230 -10.88225 -10.86513 -10.71856 -10.32473 -10.11381 -9.87421 -9.70931 -9.49160 -8.67400 -8.56648 -8.43612 -6.82151 -5.69515 -3.03073 2.88661 3.20307 3.43306 3.47136 3.48625 3.88852 4.38957 4.43627 4.53601 4.74658 4.90629 5.00313 5.10239 5.15360 5.18169 5.24805 5.34443 5.46431 5.47208 5.54089 5.61156 5.64526 5.69064 5.75832 5.77976 5.83451 5.90707 6.07372 6.14192 6.22974 6.35547 6.45000 6.63420 6.71581 6.81007 6.84883 7.04567 7.55485 7.59791 7.77894 7.85196 8.26807 8.52911 9.23720 9.83667 10.48838 11.42345 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034850 B = 0.003211 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.250344 B = 8718.199691 C = 9305.703589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.054 0.946 4 C -0.123 4.123 5 C -0.146 4.146 6 C 0.052 3.948 7 N -0.508 5.508 8 C 0.032 3.968 9 C 0.510 3.490 10 O -0.521 6.521 11 N -0.721 5.721 12 C 0.129 3.871 13 H 0.096 0.904 14 C -0.149 4.149 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.130 3.870 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.395 0.605 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.253 0.747 43 H 0.018 0.982 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 7.511 20.611 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 H 0.072 0.928 4 C -0.161 4.161 5 C -0.184 4.184 6 C -0.075 4.075 7 N -0.233 5.233 8 C -0.100 4.100 9 C 0.294 3.706 10 O -0.395 6.395 11 N -0.373 5.373 12 C 0.024 3.976 13 H 0.114 0.886 14 C -0.188 4.188 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.002 3.998 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.355 6.200 20.217 22.737 hybrid contribution 1.417 0.689 -0.344 1.613 sum -6.938 6.889 19.873 22.148 Atomic orbital electron populations 1.21704 0.93811 1.02619 1.01159 1.22604 0.96220 0.95892 0.89457 0.92815 1.22761 0.96225 1.00349 0.96814 1.22867 0.97138 1.01737 0.96689 1.22773 0.90694 1.00518 0.93528 1.63227 1.29839 1.24657 1.05537 1.22169 1.01815 0.94721 0.91252 1.20421 0.76951 0.88806 0.84401 1.90712 1.50107 1.13857 1.84837 1.46004 1.71495 1.09978 1.09775 1.22272 0.97757 0.95264 0.82330 0.88601 1.23176 1.00718 0.98766 0.96162 1.21139 0.87194 0.95590 0.90640 1.44388 1.27800 1.61837 0.99066 1.19030 1.01127 1.25436 0.89992 0.90462 1.24802 0.98834 1.00833 0.95984 1.69940 1.34942 1.48473 1.03801 0.86172 0.81501 0.79748 0.78191 1.21102 1.21579 1.21197 1.21813 0.92349 0.98084 0.87510 0.91766 0.92688 0.92488 0.90937 0.90434 0.90638 0.91697 0.89714 0.92847 0.88233 0.92014 0.77132 0.91674 0.92127 0.93259 0.93628 0.93689 0.96460 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.59 37.16 0.36 -0.73 16 2 C 0.07 0.58 3.01 -66.19 -0.20 0.38 16 3 H 0.05 0.43 7.81 -51.93 -0.41 0.02 16 4 C -0.12 -0.97 6.51 -24.53 -0.16 -1.12 16 5 C -0.15 -1.27 6.94 -24.84 -0.17 -1.44 16 6 C 0.05 0.62 5.61 -2.83 -0.02 0.60 16 7 N -0.51 -5.90 4.52 -224.81 -1.02 -6.92 16 8 C 0.03 0.35 5.03 -4.97 -0.02 0.32 16 9 C 0.51 7.62 7.45 -10.99 -0.08 7.54 16 10 O -0.52 -10.08 15.14 5.56 0.08 -10.00 16 11 N -0.72 -10.31 5.20 -51.73 -0.27 -10.58 16 12 C 0.13 2.38 3.42 -65.78 -0.23 2.16 16 13 H 0.10 1.99 7.54 -51.93 -0.39 1.60 16 14 C -0.15 -2.72 6.60 -24.90 -0.16 -2.88 16 15 C 0.18 4.37 5.37 -3.07 -0.02 4.35 16 16 N -0.60 -15.87 3.39 -170.08 -0.58 -16.45 16 17 C -0.23 -6.53 10.28 -15.06 -0.15 -6.68 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.13 2.85 6.93 -2.53 -0.02 2.83 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.67 7.30 -51.93 -0.38 0.29 16 35 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.06 0.57 7.98 -51.93 -0.41 0.16 16 37 H 0.40 4.37 8.57 -40.82 -0.35 4.02 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 40 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 41 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -33.11 347.45 -9.71 -42.81 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.74 Total: 0.27 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.97 Total: 4.99 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -1.29 Total: -60.78 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.11 -9.71 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015702930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.395 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds