Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.36157 * 2 1 4 4 C 1.54373 * 110.51325 * 237.57987 * 2 1 3 5 5 C 1.54258 * 105.06254 * 217.31815 * 4 2 1 6 6 C 1.54387 * 105.05845 * 359.97438 * 5 4 2 7 7 N 1.48560 * 104.59248 * 23.85794 * 6 5 4 8 8 C 1.46902 * 111.00083 * 200.96073 * 7 6 5 9 9 C 1.50706 * 109.46577 * 285.41497 * 8 7 6 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.64026 * 323.32065 * 12 11 9 14 14 C 1.55156 * 110.72350 * 199.97761 * 12 11 9 15 15 C 1.54901 * 101.58320 * 277.13917 * 14 12 11 16 16 N 1.47427 * 104.83386 * 322.98943 * 15 14 12 17 17 C 1.36932 * 125.65132 * 204.16081 * 16 15 14 18 18 H 1.07997 * 120.00569 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99899 * 359.96295 * 17 16 15 20 20 N 1.31621 * 120.00115 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47437 * 89.99683 * 21 19 17 23 23 H 1.48500 * 109.47144 * 210.00003 * 21 19 17 24 24 H 1.48504 * 109.46923 * 329.99345 * 21 19 17 25 25 C 1.47026 * 108.70091 * 24.12838 * 16 15 14 26 26 H 1.08992 * 109.47358 * 297.65472 * 1 2 3 27 27 H 1.09004 * 109.47131 * 57.65777 * 1 2 3 28 28 H 1.09005 * 109.46827 * 177.64868 * 1 2 3 29 29 H 1.09002 * 110.32347 * 336.21334 * 4 2 1 30 30 H 1.09004 * 110.32475 * 98.41846 * 4 2 1 31 31 H 1.09004 * 110.32799 * 118.89126 * 5 4 2 32 32 H 1.08997 * 110.32563 * 241.10435 * 5 4 2 33 33 H 1.08995 * 110.41382 * 265.07530 * 6 5 4 34 34 H 1.09005 * 110.40765 * 142.62791 * 6 5 4 35 35 H 1.09000 * 109.46894 * 165.41730 * 8 7 6 36 36 H 1.09000 * 109.47263 * 45.41296 * 8 7 6 37 37 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 38 38 H 1.09004 * 110.99943 * 35.21770 * 14 12 11 39 39 H 1.08999 * 111.00247 * 159.06050 * 14 12 11 40 40 H 1.09000 * 110.37209 * 204.15038 * 15 14 12 41 41 H 1.09002 * 110.46192 * 81.87646 * 15 14 12 42 42 H 0.96993 * 119.99997 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.88248 * 239.51784 * 25 16 15 44 44 H 1.09006 * 110.01139 * 118.42745 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0710 -0.7752 -1.2205 5 6 3.3210 -1.5162 -0.7029 6 6 3.4305 -1.1258 0.7868 7 7 2.0486 -0.7442 1.1763 8 6 2.0549 0.1044 2.3754 9 6 2.3486 -0.7413 3.5877 10 8 2.5338 -1.9336 3.4649 11 7 2.4054 -0.1727 4.8083 12 6 2.6903 -0.9948 5.9869 13 1 2.2206 -1.9742 5.8948 14 6 2.2249 -0.2780 7.2818 15 6 3.4234 0.6616 7.5651 16 7 4.6137 -0.1182 7.1795 17 6 5.8827 0.0740 7.6567 18 1 6.6907 -0.5535 7.3105 19 6 6.1308 1.0755 8.5854 20 7 5.1463 1.8407 9.0069 21 14 7.8620 1.3382 9.2358 22 1 8.5749 2.3095 8.3677 23 1 7.7952 1.8686 10.6212 24 1 8.5924 0.0452 9.2356 25 6 4.2123 -1.1370 6.1984 26 1 -0.3633 0.4769 0.9102 27 1 -0.3633 0.5498 -0.8683 28 1 -0.3633 -1.0269 -0.0422 29 1 1.3276 -1.4890 -1.5755 30 1 2.3438 -0.0836 -2.0177 31 1 3.1912 -2.5938 -0.8036 32 1 4.2074 -1.1884 -1.2459 33 1 4.1073 -0.2803 0.9095 34 1 3.7711 -1.9757 1.3784 35 1 1.0800 0.5782 2.4903 36 1 2.8221 0.8719 2.2733 37 1 2.2568 0.7808 4.9065 38 1 1.3134 0.2934 7.1060 39 1 2.0866 -0.9908 8.0948 40 1 3.4637 0.9166 8.6241 41 1 3.3501 1.5656 6.9606 42 1 5.3195 2.5402 9.6560 43 1 4.4421 -2.1313 6.5813 44 1 4.7345 -0.9732 5.2557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015702931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -3.489677 kcal Electronic energy + Delta-G solvation = -22684.812680 eV Core-core repulsion = 19444.712808 eV Total energy + Delta-G solvation = -3240.099871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94694 -38.70111 -37.03252 -33.75153 -32.53284 -31.65317 -31.50373 -29.20643 -27.62213 -26.27883 -25.46734 -24.36634 -21.46337 -20.51574 -20.24779 -20.14410 -19.70101 -17.13514 -16.63684 -16.41298 -15.54133 -15.40976 -15.06675 -14.66078 -14.41569 -13.83185 -13.71402 -13.50454 -13.32928 -12.77550 -12.61109 -12.31134 -12.12409 -12.00140 -11.80393 -11.60677 -11.36800 -11.24364 -11.04221 -10.94212 -10.88411 -10.73302 -10.64335 -10.38194 -10.12483 -9.89053 -9.60129 -9.45245 -8.70728 -8.58660 -8.51424 -6.84208 -5.67025 -3.07735 2.96201 3.29283 3.39323 3.44591 3.46531 4.00199 4.41322 4.48701 4.59107 4.81257 4.98407 5.05138 5.17519 5.20333 5.26275 5.34215 5.39580 5.44942 5.48199 5.51532 5.58693 5.64475 5.74969 5.77989 5.88053 5.89262 6.00610 6.04584 6.11769 6.29035 6.39168 6.50341 6.59642 6.73744 6.76709 6.82901 7.11433 7.42787 7.61840 7.80701 7.91205 8.34047 8.60243 9.21379 9.82044 10.46796 11.37266 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026573 B = 0.003566 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.430871 B = 7849.421308 C = 8292.587788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 H 0.051 0.949 4 C -0.118 4.118 5 C -0.124 4.124 6 C 0.033 3.967 7 N -0.486 5.486 8 C 0.024 3.976 9 C 0.514 3.486 10 O -0.528 6.528 11 N -0.714 5.714 12 C 0.134 3.866 13 H 0.086 0.914 14 C -0.153 4.153 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.128 3.872 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.010 0.990 42 H 0.251 0.749 43 H 0.030 0.970 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -1.315 -16.862 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 H 0.069 0.931 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.095 4.095 7 N -0.211 5.211 8 C -0.108 4.108 9 C 0.299 3.701 10 O -0.404 6.404 11 N -0.366 5.366 12 C 0.029 3.971 13 H 0.104 0.896 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.002 3.998 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.683 -2.530 -16.659 19.434 hybrid contribution 1.405 1.527 0.254 2.091 sum -8.278 -1.003 -16.404 18.402 Atomic orbital electron populations 1.21724 0.93746 1.02601 1.01331 1.22695 0.96216 0.95870 0.90591 0.93088 1.22333 0.97709 0.99027 0.96565 1.22288 0.97623 1.01123 0.95183 1.23193 0.89168 1.01163 0.95949 1.65118 1.18998 1.35766 1.01182 1.22166 1.03102 0.94813 0.90707 1.20319 0.77041 0.88665 0.84066 1.90667 1.48668 1.15307 1.85733 1.45980 1.72071 1.12097 1.06445 1.21945 0.96451 0.94374 0.84356 0.89561 1.23326 0.99894 1.00400 0.95551 1.21939 0.81981 0.90170 1.03229 1.44520 1.05313 1.36019 1.47155 1.19099 0.84207 1.13147 1.18360 0.90550 1.24769 0.97890 0.98213 0.99869 1.69780 1.29303 1.22879 1.35360 0.86066 0.83528 0.77821 0.78069 1.21708 1.21644 1.20685 1.21673 0.91980 0.93196 0.93001 0.92705 0.92351 0.91679 0.90865 0.91491 0.90925 0.91490 0.94098 0.88816 0.88125 0.91716 0.76784 0.91756 0.90651 0.87453 0.97203 0.93781 0.95228 0.95809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.37 37.16 0.35 -0.81 16 2 C 0.05 0.53 2.87 -66.08 -0.19 0.34 16 3 H 0.05 0.47 7.99 -51.93 -0.42 0.05 16 4 C -0.12 -1.02 6.55 -25.35 -0.17 -1.19 16 5 C -0.12 -1.21 7.00 -25.35 -0.18 -1.39 16 6 C 0.03 0.41 5.92 -2.18 -0.01 0.40 16 7 N -0.49 -6.08 4.66 -223.58 -1.04 -7.12 16 8 C 0.02 0.29 5.27 -4.97 -0.03 0.27 16 9 C 0.51 8.22 7.67 -10.98 -0.08 8.13 16 10 O -0.53 -10.29 14.95 5.56 0.08 -10.21 16 11 N -0.71 -11.36 5.11 -52.03 -0.27 -11.63 16 12 C 0.13 2.44 3.25 -66.10 -0.21 2.23 16 13 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 14 C -0.15 -2.77 6.64 -24.59 -0.16 -2.94 16 15 C 0.15 3.55 5.87 -2.53 -0.01 3.53 16 16 N -0.60 -15.51 3.39 -170.07 -0.58 -16.08 16 17 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.84 6.98 -3.06 -0.02 2.82 16 26 H 0.05 0.46 7.27 -51.93 -0.38 0.08 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.50 7.75 -51.93 -0.40 0.10 16 34 H 0.09 1.40 7.24 -51.93 -0.38 1.02 16 35 H 0.10 1.02 7.15 -51.93 -0.37 0.65 16 36 H 0.06 0.74 7.77 -51.93 -0.40 0.34 16 37 H 0.40 5.64 8.62 -40.82 -0.35 5.28 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.11 2.85 5.87 -51.93 -0.31 2.55 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.02 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -31.87 344.83 -9.62 -41.48 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.57 Total: 2.69 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.97 Total: 4.61 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -1.32 Total: -60.87 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.87 -9.62 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015702931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.992 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds