Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 110.87235 * 2 1 4 4 C 1.55142 * 110.98692 * 236.15655 * 2 1 3 5 5 C 1.54324 * 103.01625 * 206.25405 * 4 2 1 6 6 N 1.47437 * 107.23276 * 22.28477 * 5 4 2 7 7 C 1.46907 * 110.99963 * 123.25606 * 6 5 4 8 8 C 1.50697 * 109.46608 * 69.87410 * 7 6 5 9 9 O 1.21280 * 120.00851 * 0.02562 * 8 7 6 10 10 N 1.34787 * 119.99720 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.09008 * 110.88436 * 37.42922 * 11 10 8 13 13 C 1.55154 * 111.03692 * 161.33081 * 11 10 8 14 14 C 1.54325 * 102.94303 * 153.59078 * 13 11 10 15 15 N 1.47290 * 107.30599 * 337.81911 * 14 13 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 13 17 17 H 1.08005 * 119.99558 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00146 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 13 25 25 C 1.47849 * 108.56968 * 0.98867 * 6 5 4 26 26 H 1.09002 * 109.46866 * 182.38557 * 1 2 3 27 27 H 1.09000 * 109.46902 * 302.38767 * 1 2 3 28 28 H 1.09000 * 109.46789 * 62.39121 * 1 2 3 29 29 H 1.08999 * 110.70559 * 87.87841 * 4 2 1 30 30 H 1.08993 * 110.71297 * 324.63893 * 4 2 1 31 31 H 1.09001 * 109.88876 * 262.87866 * 5 4 2 32 32 H 1.08993 * 109.88381 * 141.69419 * 5 4 2 33 33 H 1.08998 * 109.46783 * 309.87518 * 7 6 5 34 34 H 1.08999 * 109.47157 * 189.87200 * 7 6 5 35 35 H 0.96999 * 119.99460 * 0.02562 * 10 8 7 36 36 H 1.09002 * 110.72290 * 271.95765 * 13 11 10 37 37 H 1.08997 * 110.72022 * 35.22537 * 13 11 10 38 38 H 1.09004 * 109.88239 * 97.22707 * 14 13 11 39 39 H 1.08995 * 109.88239 * 218.23629 * 14 13 11 40 40 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 42 42 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 43 43 H 1.09008 * 110.36899 * 94.73160 * 25 6 5 44 44 H 1.08994 * 110.37523 * 217.07233 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2031 5 6 3.4693 -1.2709 -0.7011 6 7 3.4313 -1.2423 0.7725 7 6 3.7612 -2.5595 1.3333 8 6 5.2207 -2.8535 1.0999 9 8 5.9176 -2.0453 0.5238 10 7 5.7516 -4.0147 1.5316 11 6 7.1703 -4.3008 1.3043 12 1 7.7712 -3.3979 1.4138 13 6 7.6716 -5.4210 2.2535 14 6 8.8476 -6.0389 1.4682 15 7 8.6443 -5.7130 0.0462 16 6 9.4789 -6.0605 -0.9823 17 1 9.2379 -5.7709 -1.9945 18 6 10.6344 -6.7849 -0.7240 19 7 10.9283 -7.1374 0.5096 20 14 11.7732 -7.2583 -2.1271 21 1 12.2632 -6.0302 -2.8029 22 1 12.9284 -8.0220 -1.5908 23 1 11.0336 -8.0987 -3.1028 24 6 7.3903 -4.9490 -0.0853 25 6 2.0850 -0.8064 1.2005 26 1 -0.3633 -1.0268 0.0428 27 1 -0.3633 0.5505 0.8678 28 1 -0.3633 0.4763 -0.9107 29 1 2.1885 -0.1684 -2.0806 30 1 1.4476 -1.6630 -1.4207 31 1 4.2421 -0.5941 -1.0653 32 1 3.6682 -2.2850 -1.0474 33 1 3.1544 -3.3235 0.8473 34 1 3.5571 -2.5600 2.4040 35 1 5.1941 -4.6613 1.9921 36 1 8.0171 -5.0004 3.1979 37 1 6.8898 -6.1613 2.4231 38 1 9.7893 -5.6130 1.8147 39 1 8.8574 -7.1202 1.6052 40 1 11.7360 -7.6433 0.6902 41 1 6.5632 -5.6163 -0.3279 42 1 7.4933 -4.1799 -0.8507 43 1 1.4524 -1.6710 1.4019 44 1 2.1545 -0.1721 2.0841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015708691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = -5.408765 kcal Electronic energy + Delta-G solvation = -22306.915952 eV Core-core repulsion = 19066.732863 eV Total energy + Delta-G solvation = -3240.183089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00691 -38.71118 -37.05774 -33.92972 -33.50762 -31.85349 -30.02035 -29.19693 -28.09835 -26.74477 -25.11829 -24.19858 -21.55653 -20.69041 -20.38671 -20.18775 -19.68158 -17.11716 -16.66778 -16.60496 -15.96588 -15.32376 -14.95906 -14.57971 -14.15331 -13.98163 -13.85314 -13.38818 -13.27817 -12.97584 -12.68370 -12.46278 -12.38103 -12.30248 -11.96977 -11.77831 -11.37027 -11.19610 -10.97078 -10.93811 -10.86259 -10.82233 -10.69070 -10.32734 -10.11128 -9.88721 -9.70033 -9.49038 -8.67812 -8.56943 -8.42650 -6.81637 -5.69256 -3.02499 2.89247 3.21634 3.43674 3.47452 3.48985 3.92580 4.31288 4.42825 4.53697 4.64164 4.89041 5.05745 5.07731 5.13646 5.17632 5.22382 5.32791 5.35536 5.46869 5.48359 5.48574 5.64066 5.66469 5.76019 5.77253 5.83215 5.83928 5.97329 6.15356 6.22448 6.36042 6.43902 6.64733 6.72822 6.79067 6.80163 7.04514 7.55268 7.58844 7.77930 7.85181 8.26692 8.53450 9.23759 9.83913 10.49486 11.42944 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.003086 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.017100 B = 9069.892142 C = 9654.517390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.512 5.512 7 C 0.032 3.968 8 C 0.509 3.491 9 O -0.519 6.519 10 N -0.721 5.721 11 C 0.130 3.870 12 H 0.093 0.907 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.130 3.870 25 C 0.046 3.954 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.395 0.605 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.199 9.998 3.693 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.179 4.179 5 C -0.077 4.077 6 N -0.236 5.236 7 C -0.100 4.100 8 C 0.293 3.707 9 O -0.394 6.394 10 N -0.373 5.373 11 C 0.025 3.975 12 H 0.111 0.889 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.003 3.997 25 C -0.081 4.081 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.074 10.816 3.431 23.059 hybrid contribution -0.208 -1.330 -0.711 1.522 sum -20.282 9.486 2.720 22.555 Atomic orbital electron populations 1.21720 0.94420 1.01835 1.01914 1.22289 0.95450 0.99910 0.94496 0.89672 1.22924 0.96773 0.99878 0.98364 1.22791 0.96805 1.01427 0.86628 1.63275 1.26801 1.24766 1.08803 1.22179 0.94212 0.91634 1.01968 1.20424 0.89476 0.81618 0.79133 1.90716 1.61870 1.46500 1.40290 1.46015 1.11672 1.19554 1.60078 1.22250 0.79721 0.98486 0.97035 0.88920 1.23165 1.00409 0.96836 0.98358 1.21180 0.92877 0.98177 0.82385 1.44445 1.21889 1.63071 1.03695 1.19028 1.00490 1.28694 0.87225 0.90460 1.24800 0.98292 1.00674 0.96741 1.69932 1.26621 1.43342 1.17327 0.86171 0.80228 0.78148 0.81063 1.21114 1.21587 1.21196 1.21806 0.89755 0.93669 0.94501 1.23143 0.88170 0.98389 0.98409 0.92704 0.92425 0.92376 0.90678 0.91574 0.89705 0.92823 0.91957 0.88177 0.77143 0.91596 0.92066 0.93259 0.93600 0.93695 0.96527 0.93943 0.93486 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.30 37.16 0.35 -0.51 16 2 C -0.10 -0.81 3.63 -88.48 -0.32 -1.13 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.24 6.41 -24.90 -0.16 -1.40 16 5 C 0.05 0.60 5.65 -2.84 -0.02 0.59 16 6 N -0.51 -6.03 4.85 -232.69 -1.13 -7.16 16 7 C 0.03 0.35 5.03 -4.97 -0.03 0.32 16 8 C 0.51 7.65 7.48 -10.98 -0.08 7.57 16 9 O -0.52 -10.14 15.29 5.56 0.08 -10.05 16 10 N -0.72 -10.31 5.23 -51.73 -0.27 -10.59 16 11 C 0.13 2.41 3.31 -65.79 -0.22 2.19 16 12 H 0.09 1.92 7.73 -51.92 -0.40 1.51 16 13 C -0.15 -2.69 6.58 -24.90 -0.16 -2.85 16 14 C 0.18 4.35 5.38 -2.92 -0.02 4.33 16 15 N -0.60 -15.93 3.40 -169.86 -0.58 -16.51 16 16 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.46 10.33 55.49 0.57 -26.88 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.13 2.88 6.92 -2.53 -0.02 2.86 16 25 C 0.05 0.40 6.15 -2.30 -0.01 0.39 16 26 H 0.05 0.32 8.10 -51.93 -0.42 -0.10 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.68 7.31 -51.93 -0.38 0.30 16 33 H 0.06 0.58 7.96 -51.93 -0.41 0.16 16 34 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.40 4.32 8.52 -40.82 -0.35 3.97 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 38 H 0.05 1.32 7.39 -51.93 -0.38 0.94 16 39 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.36 7.67 -51.92 -0.40 -0.04 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -33.33 347.32 -9.79 -43.11 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.74 Total: -0.02 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.94 Total: 5.34 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -1.40 Total: -61.14 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.33 -9.79 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015708691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.704 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds