Wall clock time and date at job start Tue Mar 31 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.64573 * 2 1 4 4 C 1.54587 * 110.72562 * 123.15594 * 2 1 3 5 5 C 1.53990 * 105.14445 * 140.31549 * 4 2 1 6 6 N 1.47900 * 107.05502 * 1.22295 * 5 4 2 7 7 C 1.46904 * 110.99859 * 214.15449 * 6 5 4 8 8 C 1.50699 * 109.47022 * 176.67985 * 7 6 5 9 9 O 1.21280 * 120.00163 * 5.81153 * 8 7 6 10 10 N 1.34779 * 120.00106 * 185.81945 * 8 7 6 11 11 C 1.46505 * 119.99961 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.63801 * 323.30738 * 11 10 8 13 13 C 1.55155 * 110.71721 * 199.97213 * 11 10 8 14 14 C 1.55128 * 101.48529 * 205.96781 * 13 11 10 15 15 N 1.47423 * 104.72022 * 37.29819 * 14 13 11 16 16 C 1.36938 * 125.64968 * 155.82221 * 15 14 13 17 17 H 1.07997 * 120.00527 * 192.86936 * 16 15 14 18 18 C 1.38813 * 119.99708 * 12.86076 * 16 15 14 19 19 N 1.31627 * 119.99874 * 203.69992 * 18 16 15 20 20 Si 1.86796 * 120.00319 * 23.70325 * 18 16 15 21 21 H 1.48499 * 109.47093 * 270.00043 * 20 18 16 22 22 H 1.48507 * 109.47056 * 29.99807 * 20 18 16 23 23 H 1.48498 * 109.47399 * 149.99688 * 20 18 16 24 24 C 1.47020 * 108.70514 * 335.54901 * 15 14 13 25 25 C 1.48528 * 105.82174 * 334.66896 * 6 5 4 26 26 H 1.08993 * 109.47281 * 298.30255 * 1 2 3 27 27 H 1.08999 * 109.47125 * 58.29980 * 1 2 3 28 28 H 1.08997 * 109.47201 * 178.29940 * 1 2 3 29 29 H 1.08999 * 110.31275 * 21.39438 * 4 2 1 30 30 H 1.09010 * 110.39121 * 259.27399 * 4 2 1 31 31 H 1.08995 * 109.91689 * 241.87181 * 5 4 2 32 32 H 1.09002 * 109.92112 * 120.57547 * 5 4 2 33 33 H 1.09003 * 109.46762 * 56.68436 * 7 6 5 34 34 H 1.08996 * 109.47359 * 296.68001 * 7 6 5 35 35 H 0.97000 * 120.00043 * 359.97438 * 10 8 7 36 36 H 1.08999 * 111.00356 * 324.20663 * 13 11 10 37 37 H 1.08998 * 111.00620 * 88.01976 * 13 11 10 38 38 H 1.08990 * 110.49888 * 278.45421 * 14 13 11 39 39 H 1.09008 * 110.34384 * 156.05716 * 14 13 11 40 40 H 0.96999 * 119.99540 * 354.93679 * 19 18 16 41 41 H 1.09004 * 109.88099 * 120.70621 * 24 15 14 42 42 H 1.08996 * 109.88446 * 241.87276 * 24 15 14 43 43 H 1.09006 * 110.66716 * 157.64307 * 25 6 5 44 44 H 1.08992 * 110.67033 * 280.77239 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0771 -0.7908 1.2104 5 6 3.2894 -1.5698 0.6674 6 7 3.4318 -1.2105 -0.7602 7 6 3.9212 -2.3524 -1.5441 8 6 3.9759 -1.9743 -3.0019 9 8 3.7420 -0.8339 -3.3419 10 7 4.2846 -2.9036 -3.9280 11 6 4.3384 -2.5360 -5.3451 12 1 3.5627 -1.8080 -5.5829 13 6 4.2099 -3.7942 -6.2439 14 6 4.9424 -3.3308 -7.5305 15 7 6.0695 -2.5132 -7.0460 16 6 7.2343 -2.2769 -7.7261 17 1 8.0804 -1.8433 -7.2137 18 6 7.3277 -2.5949 -9.0740 19 7 8.5056 -2.8190 -9.6172 20 14 5.7821 -2.7048 -10.1171 21 1 5.2580 -4.0938 -10.0806 22 1 4.7561 -1.7744 -9.5813 23 1 6.1032 -2.3335 -11.5186 24 6 5.7330 -1.9882 -5.7146 25 6 2.0783 -0.7966 -1.2106 26 1 -0.3633 0.4872 0.9047 27 1 -0.3633 0.5400 -0.8743 28 1 -0.3633 -1.0272 -0.0305 29 1 1.3208 -1.4807 1.5848 30 1 2.3894 -0.1078 2.0006 31 1 3.1161 -2.6414 0.7651 32 1 4.1887 -1.2850 1.2135 33 1 3.2467 -3.1986 -1.4133 34 1 4.9191 -2.6268 -1.2023 35 1 4.4720 -3.8157 -3.6562 36 1 4.7110 -4.6501 -5.7917 37 1 3.1642 -4.0211 -6.4513 38 1 4.2785 -2.7309 -8.1527 39 1 5.3107 -4.1922 -8.0879 40 1 9.3128 -2.6905 -9.0950 41 1 6.4693 -2.3268 -4.9857 42 1 5.7083 -0.8988 -5.7411 43 1 2.1445 -0.1592 -2.0924 44 1 1.4561 -1.6687 -1.4109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015708692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:24 Heat of formation + Delta-G solvation = -2.915404 kcal Electronic energy + Delta-G solvation = -22441.497171 eV Core-core repulsion = 19201.422203 eV Total energy + Delta-G solvation = -3240.074969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17239 -38.81293 -37.38462 -34.12478 -33.64034 -32.13082 -30.17260 -29.45465 -28.25937 -27.12165 -25.29239 -23.72067 -21.56770 -21.11874 -20.44819 -20.41301 -19.81831 -17.57021 -17.09583 -16.36164 -16.04670 -15.65089 -15.27694 -15.12917 -14.28921 -13.97749 -13.70207 -13.49696 -13.42694 -13.19308 -13.11604 -12.76234 -12.49183 -12.30752 -12.11981 -11.82785 -11.65017 -11.37324 -11.16960 -11.10202 -11.03172 -10.85801 -10.77475 -10.71426 -9.99319 -9.68557 -9.52009 -9.21488 -8.90564 -8.59468 -8.48075 -7.05362 -6.29681 -3.18565 2.72064 3.08309 3.41252 3.54426 3.68608 3.84133 4.33464 4.41944 4.60900 4.61991 4.74815 4.91936 4.98336 5.03578 5.06360 5.13267 5.21046 5.24369 5.36452 5.40733 5.42913 5.46073 5.50999 5.56783 5.64116 5.72940 5.83272 5.86533 5.96948 6.04549 6.07498 6.16130 6.39995 6.50524 6.59380 6.66146 6.68065 6.76033 6.87746 7.62248 7.74157 8.34653 8.37510 9.06427 9.60488 10.27500 11.18389 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039537 B = 0.003204 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.020613 B = 8737.011341 C = 8962.850518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.035 3.965 6 N -0.500 5.500 7 C 0.028 3.972 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.720 5.720 11 C 0.133 3.867 12 H 0.093 0.907 13 C -0.135 4.135 14 C 0.105 3.895 15 N -0.608 5.608 16 C -0.325 4.325 17 H 0.075 0.925 18 C -0.022 4.022 19 N -0.923 5.923 20 Si 1.066 2.934 21 H -0.294 1.294 22 H -0.286 1.286 23 H -0.299 1.299 24 C 0.128 3.872 25 C 0.038 3.962 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.262 0.738 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.103 0.897 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 -1.484 21.353 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.093 4.093 6 N -0.224 5.224 7 C -0.103 4.103 8 C 0.296 3.704 9 O -0.396 6.396 10 N -0.372 5.372 11 C 0.029 3.971 12 H 0.112 0.888 13 C -0.174 4.174 14 C -0.021 4.021 15 N -0.336 5.336 16 C -0.452 4.452 17 H 0.093 0.907 18 C -0.222 4.222 19 N -0.564 5.564 20 Si 0.898 3.102 21 H -0.222 1.222 22 H -0.212 1.212 23 H -0.227 1.227 24 C 0.001 3.999 25 C -0.090 4.090 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.121 0.879 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.336 -0.565 19.481 25.430 hybrid contribution 0.258 -0.799 1.802 1.988 sum -16.078 -1.364 21.283 26.708 Atomic orbital electron populations 1.21766 0.94607 1.01716 1.01930 1.22086 0.95306 1.00070 0.94229 0.89784 1.22483 0.96884 0.98999 0.98144 1.22911 0.99036 0.98070 0.89304 1.64583 1.24769 1.31535 1.01484 1.22203 1.02877 0.93277 0.91978 1.20406 0.76945 0.85643 0.87408 1.90690 1.47848 1.19373 1.81693 1.46025 1.71388 1.12743 1.07041 1.22041 0.99029 0.97469 0.78611 0.88848 1.23051 1.00440 0.96689 0.97210 1.22078 0.90128 0.95300 0.94576 1.44784 1.16589 1.55852 1.16383 1.20066 0.88233 1.43597 0.93314 0.90712 1.25906 1.03566 0.98544 0.94209 1.70909 0.97777 1.46329 1.41414 0.83843 0.74758 0.76101 0.75495 1.22162 1.21240 1.22661 1.21654 0.92623 0.96902 0.88722 1.23472 0.87532 0.98842 0.99121 0.92485 0.92296 0.92841 0.91475 0.90992 0.93777 0.90128 0.92146 0.87645 0.76823 0.90770 0.90981 0.94729 0.91796 0.92761 0.95161 0.94938 0.87924 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.15 37.16 0.34 -0.70 16 2 C -0.10 -0.87 3.66 -88.76 -0.32 -1.20 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -0.96 6.51 -25.38 -0.17 -1.12 16 5 C 0.03 0.29 6.70 -2.76 -0.02 0.28 16 6 N -0.50 -5.70 5.11 -231.89 -1.19 -6.88 16 7 C 0.03 0.29 5.30 -4.97 -0.03 0.27 16 8 C 0.51 7.20 7.47 -10.98 -0.08 7.11 16 9 O -0.52 -9.45 14.01 5.56 0.08 -9.37 16 10 N -0.72 -9.57 5.13 -52.03 -0.27 -9.83 16 11 C 0.13 2.25 3.23 -66.09 -0.21 2.03 16 12 H 0.09 1.67 7.69 -51.93 -0.40 1.27 16 13 C -0.13 -2.15 6.71 -24.46 -0.16 -2.32 16 14 C 0.10 2.25 4.69 -2.41 -0.01 2.24 16 15 N -0.61 -15.29 3.27 -169.94 -0.56 -15.85 16 16 C -0.32 -9.54 10.45 -15.06 -0.16 -9.70 16 17 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 18 C -0.02 -0.66 5.43 -17.43 -0.09 -0.76 16 19 N -0.92 -29.28 13.70 55.49 0.76 -28.52 16 20 Si 1.07 26.88 24.68 -169.99 -4.20 22.69 16 21 H -0.29 -6.89 6.61 56.52 0.37 -6.51 16 22 H -0.29 -6.87 6.14 56.52 0.35 -6.52 16 23 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 24 C 0.13 2.76 6.99 -3.07 -0.02 2.74 16 25 C 0.04 0.42 5.03 -1.90 -0.01 0.41 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 30 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.04 0.32 7.68 -51.93 -0.40 -0.08 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.50 7.99 -51.93 -0.41 0.08 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.05 8.52 -40.82 -0.35 3.70 16 36 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.76 5.53 -51.93 -0.29 0.47 16 39 H 0.06 1.44 6.18 -51.92 -0.32 1.12 16 40 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 41 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.44 6.42 -51.93 -0.33 1.10 16 44 H 0.04 0.41 7.90 -51.93 -0.41 0.00 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -34.43 338.92 -8.82 -43.25 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.61 Total: 0.12 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.95 Total: -0.71 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -1.25 Total: -61.08 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.20 Total: 22.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.43 -8.82 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015708692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.334 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds