Wall clock time and date at job start Tue Mar 31 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.27290 * 2 1 4 4 C 1.54590 * 110.39492 * 122.14643 * 2 1 3 5 5 C 1.54939 * 102.92191 * 140.91410 * 4 2 1 6 6 N 1.48531 * 103.22780 * 322.58633 * 5 4 2 7 7 C 1.46902 * 110.99946 * 159.71781 * 6 5 4 8 8 C 1.50702 * 109.47148 * 52.60590 * 7 6 5 9 9 O 1.21277 * 119.99761 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99980 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99670 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.78007 * 36.78279 * 11 10 8 13 13 C 1.55151 * 110.71788 * 160.02650 * 11 10 8 14 14 C 1.55131 * 101.48892 * 82.69478 * 13 11 10 15 15 N 1.47428 * 104.72191 * 37.29390 * 14 13 11 16 16 C 1.36934 * 125.64625 * 155.82001 * 15 14 13 17 17 H 1.08004 * 119.99615 * 199.40643 * 16 15 14 18 18 C 1.38812 * 120.00349 * 19.41347 * 16 15 14 19 19 N 1.31618 * 119.99966 * 28.44526 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 208.44834 * 18 16 15 21 21 H 1.48506 * 109.46968 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.47234 * 299.99625 * 20 18 16 23 23 H 1.48504 * 109.47071 * 59.99831 * 20 18 16 24 24 C 1.47022 * 108.70233 * 335.55567 * 15 14 13 25 25 C 1.47901 * 105.82065 * 39.20865 * 6 5 4 26 26 H 1.08998 * 109.47035 * 182.09419 * 1 2 3 27 27 H 1.09005 * 109.46918 * 302.09038 * 1 2 3 28 28 H 1.09005 * 109.47664 * 62.08580 * 1 2 3 29 29 H 1.08999 * 110.72606 * 259.26785 * 4 2 1 30 30 H 1.09003 * 110.72549 * 22.37896 * 4 2 1 31 31 H 1.08999 * 110.66779 * 204.14945 * 5 4 2 32 32 H 1.09007 * 110.66576 * 81.01791 * 5 4 2 33 33 H 1.08997 * 109.47121 * 292.60249 * 7 6 5 34 34 H 1.09003 * 109.47094 * 172.60595 * 7 6 5 35 35 H 0.97001 * 119.99608 * 0.02562 * 10 8 7 36 36 H 1.09001 * 111.00148 * 200.93202 * 13 11 10 37 37 H 1.09000 * 111.00574 * 324.78424 * 13 11 10 38 38 H 1.08998 * 110.49586 * 278.45155 * 14 13 11 39 39 H 1.08998 * 110.34505 * 156.06126 * 14 13 11 40 40 H 0.96999 * 120.00174 * 5.65429 * 19 18 16 41 41 H 1.08997 * 109.88218 * 120.70621 * 24 15 14 42 42 H 1.08999 * 109.88029 * 241.87097 * 24 15 14 43 43 H 1.08993 * 109.92153 * 94.02226 * 25 6 5 44 44 H 1.09004 * 109.91645 * 215.12289 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7710 1.2268 5 6 3.2881 -1.5326 0.6493 6 7 2.8333 -1.9216 -0.7100 7 6 3.9767 -2.2223 -1.5818 8 6 4.8700 -3.2320 -0.9083 9 8 4.5826 -3.6587 0.1899 10 7 5.9883 -3.6609 -1.5265 11 6 6.8563 -4.6429 -0.8720 12 1 6.2659 -5.3707 -0.3155 13 6 7.7643 -5.3518 -1.9113 14 6 8.9184 -4.3265 -2.0637 15 7 9.1212 -3.7863 -0.7070 16 6 10.2787 -3.2269 -0.2355 17 1 10.4451 -3.1463 0.8286 18 6 11.2381 -2.7632 -1.1251 19 7 10.8784 -2.3340 -2.3163 20 14 13.0397 -2.7485 -0.6318 21 1 13.8550 -2.2115 -1.7509 22 1 13.2177 -1.8904 0.5670 23 1 13.4788 -4.1323 -0.3197 24 6 7.8727 -3.9418 0.0538 25 6 2.0644 -0.7672 -1.2237 26 1 -0.3633 -1.0270 0.0376 27 1 -0.3633 0.5460 0.8707 28 1 -0.3634 0.4811 -0.9081 29 1 2.3811 -0.0801 2.0099 30 1 1.3195 -1.4668 1.6046 31 1 3.5090 -2.4159 1.2485 32 1 4.1581 -0.8783 0.5913 33 1 4.5396 -1.3083 -1.7711 34 1 3.6162 -2.6292 -2.5266 35 1 6.2182 -3.3193 -2.4048 36 1 8.1307 -6.3031 -1.5254 37 1 7.2405 -5.4913 -2.8570 38 1 8.6329 -3.5298 -2.7505 39 1 9.8233 -4.8236 -2.4132 40 1 9.9379 -2.2644 -2.5431 41 1 8.0515 -4.5530 0.9384 42 1 7.4932 -2.9631 0.3474 43 1 2.7147 -0.1203 -1.8125 44 1 1.2346 -1.1173 -1.8376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015708693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:26 Heat of formation + Delta-G solvation = -7.336095 kcal Electronic energy + Delta-G solvation = -22690.559007 eV Core-core repulsion = 19450.292343 eV Total energy + Delta-G solvation = -3240.266665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13026 -38.73096 -37.27229 -33.99850 -33.46292 -31.95837 -29.89617 -29.16892 -28.09662 -26.89417 -24.96913 -24.20837 -21.72036 -20.55390 -20.30916 -20.22934 -19.87349 -17.56016 -17.03894 -16.43257 -15.66693 -15.48746 -15.05698 -14.52463 -14.05085 -13.89269 -13.68445 -13.59560 -13.40195 -13.23706 -13.15466 -12.63091 -12.19674 -12.09079 -11.90771 -11.74342 -11.45258 -11.03748 -11.00582 -10.85387 -10.78405 -10.73773 -10.64888 -10.51067 -10.33499 -10.02695 -9.57246 -9.40009 -8.76267 -8.47637 -8.40546 -6.94053 -6.12874 -3.17751 2.81927 3.22944 3.49173 3.52951 3.70639 4.00726 4.45038 4.55643 4.58371 4.68453 4.88728 5.11998 5.16551 5.21167 5.22876 5.26042 5.29222 5.34947 5.36840 5.41104 5.58248 5.59365 5.69730 5.72303 5.78947 5.88625 5.97219 6.02438 6.12463 6.13769 6.20720 6.27563 6.44783 6.65175 6.79114 6.83429 6.87498 6.93814 7.00594 7.73344 7.82319 8.45042 8.48425 9.00164 9.79408 10.35749 11.19469 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.003506 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.246089 B = 7984.840745 C = 8363.933447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.073 0.927 4 C -0.121 4.121 5 C 0.031 3.969 6 N -0.500 5.500 7 C 0.026 3.974 8 C 0.514 3.486 9 O -0.531 6.531 10 N -0.713 5.713 11 C 0.134 3.866 12 H 0.090 0.910 13 C -0.144 4.144 14 C 0.143 3.857 15 N -0.601 5.601 16 C -0.336 4.336 17 H 0.063 0.937 18 C -0.025 4.025 19 N -0.915 5.915 20 Si 1.064 2.936 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.127 3.873 25 C 0.037 3.963 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.051 0.949 40 H 0.267 0.733 41 H 0.033 0.967 42 H 0.026 0.974 43 H 0.043 0.957 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 1.654 -0.203 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.159 4.159 5 C -0.096 4.096 6 N -0.224 5.224 7 C -0.106 4.106 8 C 0.300 3.700 9 O -0.407 6.407 10 N -0.364 5.364 11 C 0.029 3.971 12 H 0.108 0.892 13 C -0.183 4.183 14 C 0.018 3.982 15 N -0.329 5.329 16 C -0.464 4.464 17 H 0.081 0.919 18 C -0.227 4.227 19 N -0.556 5.556 20 Si 0.894 3.106 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.001 3.999 25 C -0.091 4.091 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.909 1.227 0.113 16.953 hybrid contribution -0.815 0.761 -0.012 1.115 sum -17.723 1.987 0.101 17.835 Atomic orbital electron populations 1.21815 0.94394 1.02123 1.01404 1.21997 0.96391 0.98998 0.94999 0.90905 1.22627 0.97965 0.98619 0.96736 1.23529 0.95419 1.00331 0.90358 1.64692 1.19353 1.36029 1.02343 1.22236 0.92259 0.98245 0.97848 1.20356 0.81062 0.82523 0.86082 1.90615 1.72832 1.57333 1.19928 1.45960 1.23701 1.44804 1.21954 1.21939 0.90506 0.90090 0.94591 0.89167 1.23166 0.97528 0.99555 0.98009 1.21575 0.95356 0.92808 0.88506 1.44566 1.08519 1.69870 1.09912 1.19727 0.94475 1.38809 0.93356 0.91948 1.25772 1.04795 0.96470 0.95660 1.70803 1.19554 1.41578 1.23636 0.83530 0.75769 0.76164 0.75146 1.21096 1.22010 1.22069 1.21719 0.86779 0.97422 0.94020 1.23040 0.98083 0.91038 0.96916 0.92148 0.92722 0.92799 0.91303 0.90658 0.86865 0.94379 0.91755 0.87887 0.76677 0.90149 0.91252 0.95785 0.93048 0.92241 0.94953 0.95625 0.93816 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.91 37.16 0.33 -0.75 16 2 C -0.10 -0.97 3.58 -89.26 -0.32 -1.29 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -1.29 6.61 -24.87 -0.16 -1.45 16 5 C 0.03 0.41 5.30 -1.90 -0.01 0.40 16 6 N -0.50 -6.38 5.26 -231.88 -1.22 -7.60 16 7 C 0.03 0.32 5.52 -4.97 -0.03 0.29 16 8 C 0.51 8.03 7.54 -10.98 -0.08 7.94 16 9 O -0.53 -9.87 13.25 5.56 0.07 -9.80 16 10 N -0.71 -11.02 5.11 -52.03 -0.27 -11.28 16 11 C 0.13 2.35 3.24 -66.10 -0.21 2.13 16 12 H 0.09 1.56 7.70 -51.93 -0.40 1.16 16 13 C -0.14 -2.43 6.65 -24.47 -0.16 -2.59 16 14 C 0.14 3.18 5.36 -2.41 -0.01 3.17 16 15 N -0.60 -15.26 3.26 -169.93 -0.55 -15.82 16 16 C -0.34 -9.60 10.00 -15.06 -0.15 -9.75 16 17 H 0.06 1.80 7.97 -52.48 -0.42 1.39 16 18 C -0.03 -0.72 5.10 -17.43 -0.09 -0.81 16 19 N -0.92 -27.33 13.01 55.49 0.72 -26.60 16 20 Si 1.06 25.42 30.00 -169.99 -5.10 20.32 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.13 2.79 6.98 -3.06 -0.02 2.77 16 25 C 0.04 0.38 6.35 -2.75 -0.02 0.36 16 26 H 0.06 0.50 8.11 -51.93 -0.42 0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 31 H 0.11 1.81 5.97 -51.93 -0.31 1.50 16 32 H 0.04 0.54 8.02 -51.92 -0.42 0.13 16 33 H 0.06 0.75 7.81 -51.93 -0.41 0.35 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 5.49 8.62 -40.82 -0.35 5.14 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.56 6.80 -51.93 -0.35 0.21 16 39 H 0.05 1.25 8.08 -51.93 -0.42 0.84 16 40 H 0.27 7.92 6.19 -40.82 -0.25 7.67 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 43 H 0.04 0.42 7.57 -51.93 -0.39 0.03 16 44 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -32.57 343.92 -9.65 -42.21 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.54 Total: 2.97 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.94 Total: 0.41 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -1.32 Total: -61.31 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.10 Total: 20.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.57 -9.65 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015708693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.878 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds