Wall clock time and date at job start Tue Mar 31 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.27290 * 2 1 4 4 C 1.54590 * 110.39492 * 122.14643 * 2 1 3 5 5 C 1.54939 * 102.92191 * 140.91410 * 4 2 1 6 6 N 1.48531 * 103.22780 * 322.58633 * 5 4 2 7 7 C 1.46902 * 110.99946 * 159.71781 * 6 5 4 8 8 C 1.50702 * 109.47148 * 52.60590 * 7 6 5 9 9 O 1.21277 * 119.99761 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99980 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99670 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.78007 * 36.78279 * 11 10 8 13 13 C 1.55151 * 110.71788 * 160.02650 * 11 10 8 14 14 C 1.55131 * 101.48892 * 82.69478 * 13 11 10 15 15 N 1.47428 * 104.72191 * 37.29390 * 14 13 11 16 16 C 1.36934 * 125.64625 * 155.82001 * 15 14 13 17 17 H 1.08004 * 119.99615 * 199.40643 * 16 15 14 18 18 C 1.38812 * 120.00349 * 19.41347 * 16 15 14 19 19 N 1.31618 * 119.99966 * 28.44526 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 208.44834 * 18 16 15 21 21 H 1.48506 * 109.46968 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.47234 * 299.99625 * 20 18 16 23 23 H 1.48504 * 109.47071 * 59.99831 * 20 18 16 24 24 C 1.47022 * 108.70233 * 335.55567 * 15 14 13 25 25 C 1.47901 * 105.82065 * 39.20865 * 6 5 4 26 26 H 1.08998 * 109.47035 * 182.09419 * 1 2 3 27 27 H 1.09005 * 109.46918 * 302.09038 * 1 2 3 28 28 H 1.09005 * 109.47664 * 62.08580 * 1 2 3 29 29 H 1.08999 * 110.72606 * 259.26785 * 4 2 1 30 30 H 1.09003 * 110.72549 * 22.37896 * 4 2 1 31 31 H 1.08999 * 110.66779 * 204.14945 * 5 4 2 32 32 H 1.09007 * 110.66576 * 81.01791 * 5 4 2 33 33 H 1.08997 * 109.47121 * 292.60249 * 7 6 5 34 34 H 1.09003 * 109.47094 * 172.60595 * 7 6 5 35 35 H 0.97001 * 119.99608 * 0.02562 * 10 8 7 36 36 H 1.09001 * 111.00148 * 200.93202 * 13 11 10 37 37 H 1.09000 * 111.00574 * 324.78424 * 13 11 10 38 38 H 1.08998 * 110.49586 * 278.45155 * 14 13 11 39 39 H 1.08998 * 110.34505 * 156.06126 * 14 13 11 40 40 H 0.96999 * 120.00174 * 5.65429 * 19 18 16 41 41 H 1.08997 * 109.88218 * 120.70621 * 24 15 14 42 42 H 1.08999 * 109.88029 * 241.87097 * 24 15 14 43 43 H 1.08993 * 109.92153 * 94.02226 * 25 6 5 44 44 H 1.09004 * 109.91645 * 215.12289 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7710 1.2268 5 6 3.2881 -1.5326 0.6493 6 7 2.8333 -1.9216 -0.7100 7 6 3.9767 -2.2223 -1.5818 8 6 4.8700 -3.2320 -0.9083 9 8 4.5826 -3.6587 0.1899 10 7 5.9883 -3.6609 -1.5265 11 6 6.8563 -4.6429 -0.8720 12 1 6.2659 -5.3707 -0.3155 13 6 7.7643 -5.3518 -1.9113 14 6 8.9184 -4.3265 -2.0637 15 7 9.1212 -3.7863 -0.7070 16 6 10.2787 -3.2269 -0.2355 17 1 10.4451 -3.1463 0.8286 18 6 11.2381 -2.7632 -1.1251 19 7 10.8784 -2.3340 -2.3163 20 14 13.0397 -2.7485 -0.6318 21 1 13.8550 -2.2115 -1.7509 22 1 13.2177 -1.8904 0.5670 23 1 13.4788 -4.1323 -0.3197 24 6 7.8727 -3.9418 0.0538 25 6 2.0644 -0.7672 -1.2237 26 1 -0.3633 -1.0270 0.0376 27 1 -0.3633 0.5460 0.8707 28 1 -0.3634 0.4811 -0.9081 29 1 2.3811 -0.0801 2.0099 30 1 1.3195 -1.4668 1.6046 31 1 3.5090 -2.4159 1.2485 32 1 4.1581 -0.8783 0.5913 33 1 4.5396 -1.3083 -1.7711 34 1 3.6162 -2.6292 -2.5266 35 1 6.2182 -3.3193 -2.4048 36 1 8.1307 -6.3031 -1.5254 37 1 7.2405 -5.4913 -2.8570 38 1 8.6329 -3.5298 -2.7505 39 1 9.8233 -4.8236 -2.4132 40 1 9.9379 -2.2644 -2.5431 41 1 8.0515 -4.5530 0.9384 42 1 7.4932 -2.9631 0.3474 43 1 2.7147 -0.1203 -1.8125 44 1 1.2346 -1.1173 -1.8376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015708693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:25 Heat of formation + Delta-G solvation = -30.513572 kcal Electronic energy + Delta-G solvation = -22691.564058 eV Core-core repulsion = 19450.292343 eV Total energy + Delta-G solvation = -3241.271715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34131 -39.91106 -38.76259 -35.68909 -34.38582 -33.71361 -31.10503 -30.67214 -29.49831 -28.13224 -26.36757 -25.68803 -22.83773 -22.19518 -21.73548 -21.37284 -20.97232 -19.59616 -18.24797 -17.65116 -16.78912 -16.68454 -16.34693 -16.15156 -15.69997 -15.35294 -15.12042 -14.83530 -14.73805 -14.39483 -14.11967 -13.89549 -13.61977 -13.49583 -13.02084 -12.66729 -12.65145 -12.58278 -12.44393 -12.39584 -12.28352 -11.99570 -11.90069 -11.76580 -11.67335 -11.61524 -11.52561 -10.64145 -10.54671 -10.14546 -9.45920 -9.04591 -8.37141 -5.39717 1.55748 1.58044 1.63123 1.82895 2.03601 2.60744 3.03125 3.14204 3.45689 3.58587 3.64987 3.67653 3.89063 3.90000 3.96843 4.15979 4.22002 4.29778 4.34424 4.43662 4.51032 4.53380 4.63206 4.64270 4.77789 4.84294 4.88094 4.90753 4.93165 5.02010 5.03842 5.15129 5.20937 5.23570 5.24531 5.42784 5.54498 5.64337 5.81380 5.92794 6.29253 6.52485 6.87194 7.22538 7.65574 8.24147 8.94187 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.003506 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.246089 B = 7984.840745 C = 8363.933447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.080 0.920 4 C -0.117 4.117 5 C 0.031 3.969 6 N -0.512 5.512 7 C 0.031 3.969 8 C 0.510 3.490 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.148 3.852 12 H 0.100 0.900 13 C -0.121 4.121 14 C 0.145 3.855 15 N -0.621 5.621 16 C -0.354 4.354 17 H 0.049 0.951 18 C -0.071 4.071 19 N -0.936 5.936 20 Si 1.115 2.885 21 H -0.287 1.287 22 H -0.278 1.278 23 H -0.280 1.280 24 C 0.126 3.874 25 C 0.036 3.964 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.016 0.984 39 H 0.024 0.976 40 H 0.256 0.744 41 H 0.026 0.974 42 H 0.000 1.000 43 H 0.051 0.949 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.282 1.621 -1.184 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.097 4.097 6 N -0.237 5.237 7 C -0.100 4.100 8 C 0.298 3.702 9 O -0.442 6.442 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.118 0.882 13 C -0.159 4.159 14 C 0.020 3.980 15 N -0.348 5.348 16 C -0.483 4.483 17 H 0.067 0.933 18 C -0.268 4.268 19 N -0.578 5.578 20 Si 0.939 3.061 21 H -0.213 1.213 22 H -0.204 1.204 23 H -0.206 1.206 24 C 0.000 4.000 25 C -0.091 4.091 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.245 0.755 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.018 0.982 43 H 0.070 0.930 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.199 1.192 -0.882 18.259 hybrid contribution -0.454 0.789 0.343 0.973 sum -18.653 1.981 -0.539 18.765 Atomic orbital electron populations 1.21776 0.92984 1.02060 1.02445 1.22019 0.97528 0.98914 0.93664 0.90191 1.22605 0.96701 0.98631 0.97615 1.23366 0.96193 0.98998 0.91106 1.64692 1.19478 1.37506 1.02038 1.22280 0.91805 0.97523 0.98385 1.21005 0.81085 0.82492 0.85665 1.90619 1.73624 1.58528 1.21424 1.45901 1.23349 1.44509 1.22253 1.21689 0.89857 0.90083 0.94138 0.88218 1.23068 0.95100 0.98089 0.99658 1.21567 0.96228 0.93584 0.86667 1.44810 1.08854 1.69777 1.11395 1.19945 0.96199 1.39083 0.93067 0.93302 1.27143 1.08446 0.95901 0.95311 1.70910 1.18924 1.43434 1.24511 0.82857 0.71036 0.76987 0.75202 1.21276 1.20428 1.20625 1.21786 0.86935 0.96483 0.94784 1.23141 0.98201 0.90379 0.97402 0.92714 0.92005 0.91506 0.90567 0.90716 0.89929 0.95947 0.90963 0.84929 0.75470 0.89019 0.87347 0.96676 0.95763 0.93346 0.95624 0.98178 0.93047 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.91 71.98 0.64 -1.12 16 2 C -0.10 -1.70 3.58 -9.92 -0.04 -1.74 16 3 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.12 -2.41 6.61 31.80 0.21 -2.20 16 5 C 0.03 0.84 5.30 86.65 0.46 1.30 16 6 N -0.51 -12.46 5.26 -887.54 -4.67 -17.13 16 7 C 0.03 0.71 5.52 85.56 0.47 1.19 16 8 C 0.51 15.57 7.54 87.66 0.66 16.23 16 9 O -0.56 -21.16 13.25 -3.02 -0.04 -21.20 16 10 N -0.71 -21.04 5.11 -436.92 -2.23 -23.27 16 11 C 0.15 5.05 3.24 46.18 0.15 5.20 16 12 H 0.10 3.31 7.70 -2.39 -0.02 3.29 16 13 C -0.12 -3.84 6.65 32.06 0.21 -3.62 16 14 C 0.14 6.43 5.36 86.93 0.47 6.90 16 15 N -0.62 -32.13 3.26 -691.53 -2.26 -34.39 16 16 C -0.35 -20.72 10.00 84.03 0.84 -19.88 16 17 H 0.05 2.91 7.97 -2.91 -0.02 2.89 16 18 C -0.07 -4.11 5.10 84.86 0.43 -3.68 16 19 N -0.94 -56.66 13.01 21.65 0.28 -56.38 16 20 Si 1.12 51.52 30.00 68.60 2.06 53.57 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.13 5.66 6.98 86.73 0.61 6.27 16 25 C 0.04 0.65 6.35 86.45 0.55 1.20 16 26 H 0.05 0.78 8.11 -2.39 -0.02 0.77 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.53 7.85 -2.39 -0.02 1.52 16 31 H 0.08 2.77 5.97 -2.39 -0.01 2.75 16 32 H 0.02 0.66 8.02 -2.38 -0.02 0.64 16 33 H 0.07 1.57 7.81 -2.39 -0.02 1.56 16 34 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.41 10.54 8.62 -92.71 -0.80 9.74 16 36 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.02 0.71 6.80 -2.39 -0.02 0.70 16 39 H 0.02 1.19 8.08 -2.39 -0.02 1.17 16 40 H 0.26 15.57 6.19 -92.71 -0.57 15.00 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.00 0.01 8.04 -2.39 -0.02 -0.01 16 43 H 0.05 0.86 7.57 -2.39 -0.02 0.84 16 44 H 0.09 1.46 7.69 -2.38 -0.02 1.44 16 Total: -1.00 -72.31 343.92 -0.82 -73.13 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.37 Total: 19.61 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.66 Total: 6.05 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -8.88 Total: -131.17 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.06 Total: 53.57 kcal Total: -72.31 -0.82 -73.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015708693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.616 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds