Wall clock time and date at job start Tue Mar 31 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47842 * 110.99901 * 2 1 4 4 C 1.55117 * 104.90704 * 146.24111 * 3 2 1 5 5 C 1.55147 * 101.55499 * 323.15561 * 4 3 2 6 6 H 1.08995 * 110.70768 * 276.96571 * 5 4 3 7 7 C 1.53002 * 110.70242 * 153.90499 * 5 4 3 8 8 C 1.50705 * 109.46916 * 177.40068 * 7 5 4 9 9 O 1.21279 * 119.99799 * 0.02562 * 8 7 5 10 10 N 1.34771 * 120.00023 * 180.02562 * 8 7 5 11 11 C 1.46497 * 120.00449 * 180.02562 * 10 8 7 12 12 H 1.09006 * 110.88087 * 31.11617 * 11 10 8 13 13 C 1.55157 * 111.00878 * 154.99857 * 11 10 8 14 14 C 1.54325 * 102.93717 * 82.61161 * 13 11 10 15 15 N 1.47022 * 107.27534 * 22.19885 * 14 13 11 16 16 C 1.36936 * 125.65041 * 181.02562 * 15 14 13 17 17 H 1.07997 * 119.99957 * 153.89819 * 16 15 14 18 18 C 1.38810 * 119.99669 * 333.89529 * 16 15 14 19 19 N 1.31617 * 120.00105 * 145.64335 * 18 16 15 20 20 Si 1.86799 * 120.00164 * 325.63542 * 18 16 15 21 21 H 1.48501 * 109.47342 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47371 * 240.00016 * 20 18 16 23 23 H 1.48504 * 109.47044 * 120.00056 * 20 18 16 24 24 C 1.47426 * 108.69937 * 1.28109 * 15 14 13 25 25 C 1.47450 * 110.99700 * 120.84095 * 2 1 3 26 26 H 1.08992 * 109.47192 * 299.15955 * 1 2 3 27 27 H 1.09001 * 109.47087 * 59.16208 * 1 2 3 28 28 H 1.09005 * 109.46787 * 179.16126 * 1 2 3 29 29 H 1.09002 * 110.37032 * 265.18659 * 3 2 1 30 30 H 1.08995 * 110.37328 * 27.41823 * 3 2 1 31 31 H 1.08995 * 111.14802 * 205.04602 * 4 3 2 32 32 H 1.09005 * 110.92118 * 81.16486 * 4 3 2 33 33 H 1.09009 * 109.46904 * 57.40654 * 7 5 4 34 34 H 1.09000 * 109.47455 * 297.40652 * 7 5 4 35 35 H 0.97008 * 119.99910 * 0.02562 * 10 8 7 36 36 H 1.08993 * 110.72061 * 324.25316 * 13 11 10 37 37 H 1.08999 * 110.87095 * 201.04369 * 13 11 10 38 38 H 1.08999 * 109.88719 * 262.77488 * 14 13 11 39 39 H 1.09003 * 109.87763 * 141.61299 * 14 13 11 40 40 H 0.97004 * 119.99870 * 5.05282 * 19 18 16 41 41 H 1.08995 * 110.36621 * 94.48827 * 24 15 14 42 42 H 1.09003 * 110.36364 * 216.81108 * 24 15 14 43 43 H 1.09003 * 109.88740 * 117.33966 * 25 2 1 44 44 H 1.08993 * 110.02584 * 356.21990 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3053 1.3062 0.8330 5 6 2.9158 0.2822 1.9315 6 1 2.3752 0.7724 2.7411 7 6 4.1569 -0.4338 2.4681 8 6 3.7552 -1.3737 3.5755 9 8 2.5908 -1.4624 3.9030 10 7 4.6899 -2.1155 4.2019 11 6 4.2994 -3.0296 5.2781 12 1 3.2939 -3.4169 5.1132 13 6 5.3236 -4.1858 5.4248 14 6 6.4363 -3.5543 6.2878 15 7 5.8381 -2.4234 7.0122 16 6 6.4990 -1.5866 7.8715 17 1 6.1403 -0.5800 8.0276 18 6 7.6299 -2.0324 8.5417 19 7 8.6166 -1.1988 8.7941 20 14 7.7512 -3.8153 9.0857 21 1 6.5190 -4.5404 8.6841 22 1 7.9014 -3.8733 10.5619 23 1 8.9300 -4.4498 8.4429 24 6 4.4076 -2.3432 6.6650 25 6 1.9974 -0.7057 1.1819 26 1 -0.3633 0.5007 0.8974 27 1 -0.3633 0.5268 -0.8824 28 1 -0.3633 -1.0276 -0.0150 29 1 2.2148 1.7037 -1.0182 30 1 1.2880 2.0595 0.4705 31 1 3.5482 2.2746 1.2703 32 1 4.1321 0.9342 0.2279 33 1 4.8625 0.3021 2.8541 34 1 4.6262 -0.9998 1.6634 35 1 5.6212 -2.0442 3.9402 36 1 5.7125 -4.4824 4.4508 37 1 4.8762 -5.0383 5.9359 38 1 7.2447 -3.1993 5.6487 39 1 6.8172 -4.2891 6.9972 40 1 8.5238 -0.2577 8.5778 41 1 3.8077 -2.8763 7.4026 42 1 4.0912 -1.3022 6.5983 43 1 2.5697 -1.5785 0.8675 44 1 1.1772 -1.0141 1.8301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015994346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:41 Heat of formation + Delta-G solvation = -10.236825 kcal Electronic energy + Delta-G solvation = -22591.437784 eV Core-core repulsion = 19351.045334 eV Total energy + Delta-G solvation = -3240.392450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.05197 -38.84603 -37.38355 -33.80802 -33.43494 -32.11307 -30.19482 -29.42214 -28.07632 -27.09051 -25.14270 -23.79929 -21.31228 -21.23922 -20.55807 -20.01399 -19.71438 -17.54413 -16.99904 -16.39611 -15.93919 -15.52449 -15.10404 -14.92003 -14.31712 -14.17840 -13.75521 -13.55695 -13.28351 -13.16392 -12.95584 -12.78119 -12.50194 -11.94592 -11.77899 -11.66435 -11.53303 -11.42721 -11.24572 -11.04343 -10.92511 -10.86045 -10.79124 -10.66656 -10.44767 -9.64711 -9.56422 -9.30043 -8.81100 -8.51268 -8.23938 -7.07378 -6.32478 -3.27217 2.84703 3.40294 3.43539 3.51820 3.65988 3.85238 4.38561 4.49759 4.57469 4.69420 4.92065 4.98942 5.07576 5.11164 5.16295 5.23735 5.28159 5.32285 5.35733 5.48328 5.50429 5.57093 5.58131 5.61003 5.65813 5.73240 5.86884 5.91925 5.96352 6.12895 6.17517 6.19580 6.33108 6.61139 6.63278 6.76032 6.78647 6.86767 6.94487 7.77086 7.90639 8.36266 8.46280 9.00173 9.59389 10.33521 11.03970 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035535 B = 0.003443 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.768150 B = 8131.181311 C = 8531.110145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.041 3.959 4 C -0.127 4.127 5 C -0.091 4.091 6 H 0.083 0.917 7 C -0.131 4.131 8 C 0.513 3.487 9 O -0.549 6.549 10 N -0.707 5.707 11 C 0.129 3.871 12 H 0.093 0.907 13 C -0.139 4.139 14 C 0.121 3.879 15 N -0.601 5.601 16 C -0.341 4.341 17 H 0.065 0.935 18 C -0.006 4.006 19 N -0.903 5.903 20 Si 1.050 2.950 21 H -0.279 1.279 22 H -0.298 1.298 23 H -0.293 1.293 24 C 0.118 3.882 25 C 0.051 3.949 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.265 0.735 41 H 0.028 0.972 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.923 0.608 -17.805 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.111 4.111 6 H 0.102 0.898 7 C -0.171 4.171 8 C 0.299 3.701 9 O -0.427 6.427 10 N -0.357 5.357 11 C 0.023 3.977 12 H 0.111 0.889 13 C -0.178 4.178 14 C -0.004 4.004 15 N -0.328 5.328 16 C -0.468 4.468 17 H 0.083 0.917 18 C -0.210 4.210 19 N -0.541 5.541 20 Si 0.881 3.119 21 H -0.206 1.206 22 H -0.226 1.226 23 H -0.220 1.220 24 C -0.009 4.009 25 C -0.076 4.076 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.569 -0.748 -17.243 20.238 hybrid contribution -0.781 1.519 0.150 1.714 sum -11.350 0.771 -17.093 20.532 Atomic orbital electron populations 1.22526 0.87864 1.02071 1.00388 1.63600 1.07901 1.14233 1.40502 1.23071 0.95650 0.89661 1.00297 1.22838 0.97747 0.99290 0.96633 1.22111 0.95421 0.95939 0.97582 0.89839 1.21683 0.99283 0.98677 0.97505 1.20589 0.85796 0.80756 0.82964 1.90660 1.18584 1.66949 1.66497 1.45847 1.10803 1.42673 1.36387 1.22127 0.98246 0.89706 0.87603 0.88894 1.22899 0.97299 0.97281 1.00280 1.21633 0.94404 0.90641 0.93716 1.44706 1.02948 1.34634 1.50556 1.19756 1.11820 0.93009 1.22238 0.91733 1.26069 0.92368 1.06337 0.96195 1.70924 1.27283 1.05351 1.50560 0.84021 0.75263 0.76319 0.76290 1.20581 1.22595 1.21995 1.22106 0.88217 0.98414 0.92130 1.22862 0.98548 0.96709 0.89484 0.95418 0.91640 0.91405 0.90318 0.93644 0.90598 0.90383 0.88595 0.88746 0.76420 0.90965 0.90283 0.94826 0.95135 0.92427 0.95385 0.93745 0.90851 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.12 60.07 0.55 0.73 16 2 N -0.54 -5.74 5.45 -239.38 -1.30 -7.04 16 3 C 0.04 0.37 6.73 -2.19 -0.01 0.36 16 4 C -0.13 -1.12 6.55 -24.48 -0.16 -1.28 16 5 C -0.09 -1.00 2.52 -88.79 -0.22 -1.22 16 6 H 0.08 1.06 7.97 -51.93 -0.41 0.65 16 7 C -0.13 -1.43 5.10 -27.88 -0.14 -1.57 16 8 C 0.51 7.53 7.64 -10.99 -0.08 7.44 16 9 O -0.55 -9.74 14.62 5.56 0.08 -9.66 16 10 N -0.71 -10.58 5.20 -51.62 -0.27 -10.85 16 11 C 0.13 2.16 3.43 -65.66 -0.23 1.93 16 12 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 13 C -0.14 -2.20 6.55 -24.90 -0.16 -2.36 16 14 C 0.12 2.51 6.03 -3.06 -0.02 2.49 16 15 N -0.60 -14.49 3.05 -169.93 -0.52 -15.01 16 16 C -0.34 -9.67 10.24 -15.06 -0.15 -9.83 16 17 H 0.06 1.98 8.06 -52.49 -0.42 1.55 16 18 C -0.01 -0.17 5.29 -17.43 -0.09 -0.27 16 19 N -0.90 -27.67 13.70 55.49 0.76 -26.91 16 20 Si 1.05 26.01 26.22 -169.99 -4.46 21.55 16 21 H -0.28 -6.53 6.18 56.52 0.35 -6.18 16 22 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.12 2.47 6.95 -2.41 -0.02 2.45 16 25 C 0.05 0.60 5.61 -2.83 -0.02 0.58 16 26 H 0.03 0.26 8.10 -51.93 -0.42 -0.16 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.40 7.78 -51.93 -0.40 0.00 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.64 8.05 -51.93 -0.42 0.23 16 33 H 0.10 0.98 8.14 -51.92 -0.42 0.55 16 34 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 35 H 0.40 5.50 8.67 -40.82 -0.35 5.14 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.68 3.85 -51.93 -0.20 0.48 16 40 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 44 H 0.07 0.87 7.21 -51.93 -0.37 0.49 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -32.55 343.49 -8.94 -41.49 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.65 Total: 1.78 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.76 Total: -0.54 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -1.33 Total: -59.81 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -4.46 Total: 21.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.55 -8.94 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015994346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.256 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds