Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48523 * 111.00369 * 2 1 4 4 C 1.54943 * 103.22791 * 200.28009 * 3 2 1 5 5 C 1.54596 * 102.91966 * 37.41472 * 4 3 2 6 6 H 1.08997 * 110.39281 * 97.00319 * 5 4 3 7 7 C 1.53003 * 110.30451 * 219.12715 * 5 4 3 8 8 C 1.50704 * 109.46823 * 182.16546 * 7 5 4 9 9 O 1.21285 * 119.99860 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99790 * 179.97438 * 8 7 5 11 11 C 1.46505 * 119.99929 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.88332 * 328.87825 * 11 10 8 13 13 C 1.55157 * 111.00197 * 205.00163 * 11 10 8 14 14 C 1.54325 * 102.94184 * 206.42291 * 13 11 10 15 15 N 1.47022 * 107.26948 * 22.19107 * 14 13 11 16 16 C 1.36945 * 125.64832 * 181.02381 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47423 * 108.70390 * 1.29074 * 15 14 13 25 25 C 1.47905 * 110.99751 * 242.60019 * 2 1 3 26 26 H 1.08997 * 109.48009 * 177.39668 * 1 2 3 27 27 H 1.09005 * 109.47297 * 297.40329 * 1 2 3 28 28 H 1.09006 * 109.47127 * 57.39410 * 1 2 3 29 29 H 1.09002 * 110.66996 * 318.70881 * 3 2 1 30 30 H 1.08994 * 110.67234 * 81.67715 * 3 2 1 31 31 H 1.09000 * 110.72214 * 279.05691 * 4 3 2 32 32 H 1.09005 * 110.72511 * 155.77287 * 4 3 2 33 33 H 1.08999 * 109.47160 * 62.17316 * 7 5 4 34 34 H 1.08996 * 109.47374 * 302.17173 * 7 5 4 35 35 H 0.97000 * 120.00095 * 0.02562 * 10 8 7 36 36 H 1.09000 * 110.72140 * 88.06121 * 13 11 10 37 37 H 1.08999 * 110.87600 * 324.85463 * 13 11 10 38 38 H 1.09002 * 109.88274 * 262.77538 * 14 13 11 39 39 H 1.09000 * 110.01178 * 141.68100 * 14 13 11 40 40 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.37068 * 94.48354 * 24 15 14 42 42 H 1.09005 * 110.36651 * 216.80519 * 24 15 14 43 43 H 1.09005 * 109.91533 * 26.49706 * 25 2 1 44 44 H 1.08997 * 110.08104 * 265.29271 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3865 0.0000 4 6 3.4492 1.2104 -0.5228 5 6 3.2982 0.1052 -1.5931 6 1 3.2142 0.5469 -2.5860 7 6 4.4895 -0.8534 -1.5383 8 6 4.3500 -1.8906 -2.6226 9 8 3.3922 -1.8653 -3.3663 10 7 5.2899 -2.8456 -2.7665 11 6 5.1546 -3.8537 -3.8210 12 1 4.1047 -4.0651 -4.0240 13 6 5.9219 -5.1508 -3.4521 14 6 6.2524 -5.7608 -4.8306 15 7 6.2078 -4.6682 -5.8133 16 6 6.4243 -4.7962 -7.1595 17 1 6.3691 -3.9285 -7.8002 18 6 6.7148 -6.0410 -7.7004 19 7 6.7816 -7.0986 -6.9196 20 14 7.0095 -6.2158 -9.5367 21 1 5.7212 -6.4952 -10.2204 22 1 7.5882 -4.9553 -10.0673 23 1 7.9532 -7.3357 -9.7822 24 6 5.8976 -3.4109 -5.1087 25 6 1.9990 -0.6355 -1.2259 26 1 -0.3635 -1.0265 -0.0467 27 1 -0.3634 0.4730 0.9124 28 1 -0.3634 0.5538 -0.8657 29 1 1.4239 2.0204 -0.6730 30 1 2.0014 1.7987 1.0090 31 1 4.1116 0.8833 0.2787 32 1 3.8124 2.1350 -0.9716 33 1 4.5155 -1.3455 -0.5660 34 1 5.4131 -0.2940 -1.6871 35 1 6.0561 -2.8656 -2.1719 36 1 5.2873 -5.8234 -2.8750 37 1 6.8351 -4.9193 -2.9038 38 1 5.5137 -6.5202 -5.0867 39 1 7.2483 -6.2035 -4.8134 40 1 6.9843 -7.9686 -7.2977 41 1 6.8160 -2.8809 -4.8564 42 1 5.2518 -2.7820 -5.7215 43 1 1.2757 -0.5403 -2.0359 44 1 2.2115 -1.6882 -1.0399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015994347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -9.952022 kcal Electronic energy + Delta-G solvation = -22284.463181 eV Core-core repulsion = 19044.083082 eV Total energy + Delta-G solvation = -3240.380100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04776 -38.74173 -37.15006 -33.97533 -33.49743 -31.86561 -30.14936 -29.14761 -27.74847 -26.71369 -25.16215 -24.21995 -21.44262 -21.06258 -20.34880 -20.04744 -19.66181 -17.15497 -16.71079 -16.43664 -15.77310 -15.60253 -14.90365 -14.61441 -14.40061 -14.14715 -13.88621 -13.34196 -13.18832 -12.92276 -12.72134 -12.40830 -12.25117 -11.96910 -11.79075 -11.65980 -11.60717 -11.37875 -11.00647 -10.94114 -10.86237 -10.78188 -10.74168 -10.33779 -10.09338 -9.89235 -9.72358 -9.51539 -8.69999 -8.63867 -8.57833 -6.82973 -5.70514 -3.04081 2.84904 3.38134 3.42246 3.47043 3.48950 3.85622 4.39769 4.43480 4.52409 4.64840 4.92328 5.04617 5.14610 5.20536 5.24849 5.31912 5.34703 5.45061 5.46689 5.52637 5.58911 5.64059 5.64953 5.73886 5.76357 5.79498 5.82873 5.99790 6.08712 6.21907 6.34799 6.43809 6.61863 6.68725 6.71197 6.81078 7.00770 7.54978 7.58676 7.75173 7.83753 8.25862 8.46942 9.22801 9.82763 10.47807 11.41398 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037797 B = 0.002959 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.626721 B = 9461.090503 C = 9561.334379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.033 3.967 4 C -0.120 4.120 5 C -0.081 4.081 6 H 0.083 0.917 7 C -0.132 4.132 8 C 0.508 3.492 9 O -0.540 6.540 10 N -0.718 5.718 11 C 0.127 3.873 12 H 0.096 0.904 13 C -0.150 4.150 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.130 3.870 25 C 0.049 3.951 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.041 0.959 43 H 0.049 0.951 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.126 14.602 16.732 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.251 5.251 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.101 4.101 6 H 0.102 0.898 7 C -0.172 4.172 8 C 0.294 3.706 9 O -0.417 6.417 10 N -0.369 5.369 11 C 0.022 3.978 12 H 0.114 0.886 13 C -0.189 4.189 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.002 3.998 25 C -0.078 4.078 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.622 14.138 16.492 22.709 hybrid contribution 0.282 0.176 -1.430 1.468 sum -6.340 14.314 15.062 21.725 Atomic orbital electron populations 1.22502 0.88054 1.02133 1.00615 1.64770 1.08049 1.14689 1.37591 1.23235 0.95172 0.90211 1.00880 1.22586 0.96628 0.98350 0.98276 1.21750 0.93749 0.94901 0.99699 0.89817 1.21771 1.00232 0.96436 0.98756 1.20663 0.82522 0.82136 0.85261 1.90709 1.31431 1.73936 1.45658 1.46055 1.25497 1.30198 1.35138 1.22335 1.00929 0.87229 0.87333 0.88616 1.23171 0.98914 0.96043 1.00725 1.21145 1.00729 0.90081 0.82671 1.44402 1.83132 1.01945 1.03657 1.19074 1.40784 0.94031 0.81588 0.90412 1.24806 1.02031 0.95533 0.98141 1.69952 1.55374 0.98663 1.33160 0.86094 0.77623 0.77221 0.84686 1.21562 1.20698 1.21665 1.21856 0.95803 0.90347 0.91759 1.22862 0.95535 0.99269 0.90169 0.91290 0.91479 0.95420 0.93832 0.90152 0.90421 0.90870 0.88620 0.88847 0.76945 0.91699 0.92076 0.93285 0.93602 0.93741 0.96349 0.94028 0.93240 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.40 60.06 0.56 0.70 16 2 N -0.53 -5.42 5.55 -238.72 -1.33 -6.75 16 3 C 0.03 0.28 6.56 -1.90 -0.01 0.26 16 4 C -0.12 -0.95 6.61 -24.87 -0.16 -1.11 16 5 C -0.08 -0.83 2.62 -89.26 -0.23 -1.07 16 6 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 7 C -0.13 -1.27 4.90 -27.88 -0.14 -1.41 16 8 C 0.51 7.15 7.34 -10.99 -0.08 7.07 16 9 O -0.54 -9.81 14.71 5.55 0.08 -9.73 16 10 N -0.72 -10.01 5.19 -51.61 -0.27 -10.27 16 11 C 0.13 2.31 3.44 -65.66 -0.23 2.09 16 12 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 13 C -0.15 -2.70 6.59 -24.90 -0.16 -2.87 16 14 C 0.18 4.33 5.38 -3.06 -0.02 4.32 16 15 N -0.60 -15.81 3.39 -169.93 -0.58 -16.39 16 16 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.34 10.31 55.49 0.57 -26.77 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.13 2.82 6.93 -2.41 -0.02 2.80 16 25 C 0.05 0.57 5.28 -2.75 -0.01 0.56 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.24 8.00 -51.93 -0.42 -0.17 16 29 H 0.04 0.36 7.96 -51.93 -0.41 -0.05 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.40 4.29 8.57 -40.82 -0.35 3.94 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 38 H 0.05 1.32 7.38 -51.93 -0.38 0.93 16 39 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.64 7.73 -51.93 -0.40 0.24 16 44 H 0.08 1.02 7.28 -51.93 -0.38 0.64 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -32.74 346.11 -9.79 -42.53 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.71 Total: 0.38 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.75 Total: 4.36 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -1.60 Total: -60.18 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.74 -9.79 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015994347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.581 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds