Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47844 * 111.00266 * 2 1 4 4 C 1.54911 * 104.79400 * 146.36445 * 3 2 1 5 5 C 1.55138 * 101.65317 * 322.93083 * 4 3 2 6 6 H 1.09001 * 110.85482 * 277.20285 * 5 4 3 7 7 C 1.53005 * 110.70449 * 154.04025 * 5 4 3 8 8 C 1.50699 * 109.46742 * 179.97438 * 7 5 4 9 9 O 1.21283 * 120.00633 * 359.97438 * 8 7 5 10 10 N 1.34784 * 119.99487 * 179.97438 * 8 7 5 11 11 C 1.46501 * 119.99544 * 179.97438 * 10 8 7 12 12 H 1.08993 * 110.88890 * 328.87931 * 11 10 8 13 13 C 1.55157 * 111.00088 * 205.00035 * 11 10 8 14 14 C 1.54330 * 102.94216 * 206.42751 * 13 11 10 15 15 N 1.47024 * 107.27024 * 22.18785 * 14 13 11 16 16 C 1.36934 * 125.64602 * 181.02080 * 15 14 13 17 17 H 1.08005 * 119.99977 * 185.20920 * 16 15 14 18 18 C 1.38812 * 120.00225 * 5.21594 * 16 15 14 19 19 N 1.31622 * 119.99713 * 352.94307 * 18 16 15 20 20 Si 1.86795 * 120.00112 * 172.94052 * 18 16 15 21 21 H 1.48497 * 109.47264 * 275.00935 * 20 18 16 22 22 H 1.48508 * 109.47101 * 35.01234 * 20 18 16 23 23 H 1.48504 * 109.47228 * 155.00619 * 20 18 16 24 24 C 1.47420 * 108.70353 * 1.29157 * 15 14 13 25 25 C 1.47445 * 110.99966 * 120.84444 * 2 1 3 26 26 H 1.08993 * 109.46727 * 299.15520 * 1 2 3 27 27 H 1.08999 * 109.46791 * 59.15372 * 1 2 3 28 28 H 1.08999 * 109.47317 * 179.15414 * 1 2 3 29 29 H 1.08995 * 110.37252 * 265.18972 * 3 2 1 30 30 H 1.09002 * 110.37253 * 27.42384 * 3 2 1 31 31 H 1.09008 * 110.98589 * 204.83959 * 4 3 2 32 32 H 1.09001 * 110.99244 * 81.02483 * 4 3 2 33 33 H 1.08995 * 109.47321 * 59.94778 * 7 5 4 34 34 H 1.09000 * 109.46916 * 299.94361 * 7 5 4 35 35 H 0.96994 * 120.00374 * 359.97438 * 10 8 7 36 36 H 1.08999 * 110.72281 * 88.06590 * 13 11 10 37 37 H 1.09003 * 110.72157 * 324.78228 * 13 11 10 38 38 H 1.09000 * 109.87816 * 262.77979 * 14 13 11 39 39 H 1.08998 * 109.88395 * 141.61356 * 14 13 11 40 40 H 0.96999 * 119.99432 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.36644 * 94.47668 * 24 15 14 42 42 H 1.08995 * 110.36947 * 216.80156 * 24 15 14 43 43 H 1.09000 * 109.88707 * 117.33462 * 25 2 1 44 44 H 1.08999 * 110.02047 * 356.22441 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9159 0.2820 1.9314 6 1 2.3753 0.7723 2.7411 7 6 4.1570 -0.4340 2.4680 8 6 3.7481 -1.4165 3.5350 9 8 2.5792 -1.5323 3.8370 10 7 4.6815 -2.1665 4.1538 11 6 4.2840 -3.1212 5.1915 12 1 3.4027 -2.7685 5.7271 13 6 5.4556 -3.3985 6.1702 14 6 5.1387 -4.8143 6.6964 15 7 4.2622 -5.4610 5.7088 16 6 3.7375 -6.7216 5.8119 17 1 3.1712 -7.1395 4.9926 18 6 3.9332 -7.4624 6.9694 19 7 4.7363 -7.0130 7.9104 20 14 3.0569 -9.0970 7.1915 21 1 1.6987 -8.8596 7.7430 22 1 2.9453 -9.7813 5.8782 23 1 3.8301 -9.9497 8.1298 24 6 4.0470 -4.5299 4.5863 25 6 1.9974 -0.7058 1.1818 26 1 -0.3632 0.5006 0.8974 27 1 -0.3633 0.5269 -0.8823 28 1 -0.3634 -1.0275 -0.0152 29 1 2.2149 1.7037 -1.0182 30 1 1.2882 2.0595 0.4706 31 1 3.5496 2.2719 1.2640 32 1 4.1303 0.9280 0.2243 33 1 4.8442 0.2982 2.8919 34 1 4.6497 -0.9662 1.6543 35 1 5.6163 -2.0742 3.9121 36 1 5.4564 -2.6753 6.9856 37 1 6.4095 -3.3878 5.6427 38 1 4.6283 -4.7470 7.6571 39 1 6.0611 -5.3851 6.8034 40 1 4.8734 -7.5309 8.7190 41 1 4.7619 -4.7272 3.7874 42 1 3.0266 -4.6151 4.2130 43 1 2.5697 -1.5785 0.8674 44 1 1.1771 -1.0142 1.8299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015994349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = -10.377629 kcal Electronic energy + Delta-G solvation = -22354.699959 eV Core-core repulsion = 19114.301404 eV Total energy + Delta-G solvation = -3240.398555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.04157 -38.76132 -37.16211 -33.98572 -33.44699 -31.87012 -30.15649 -29.15841 -27.76806 -26.70610 -25.15761 -24.22718 -21.25000 -21.17178 -20.37005 -20.05696 -19.74627 -17.19989 -16.69117 -16.48391 -15.76478 -15.40781 -15.06104 -14.60977 -14.24543 -14.09657 -13.87023 -13.51739 -13.14377 -12.89246 -12.80296 -12.42010 -12.25055 -11.97070 -11.78315 -11.73351 -11.51464 -11.36979 -10.99353 -10.92676 -10.91467 -10.82613 -10.74029 -10.34230 -10.09803 -9.89738 -9.74360 -9.52931 -8.70886 -8.56517 -8.47768 -6.83256 -5.72164 -3.04387 2.82402 3.35421 3.42850 3.47642 3.48917 3.87254 4.35453 4.46704 4.53277 4.66444 4.89863 5.05546 5.16218 5.23154 5.27041 5.30491 5.37001 5.44456 5.47730 5.50941 5.55229 5.62413 5.68440 5.71565 5.75880 5.81397 5.86254 6.00062 6.16224 6.20627 6.33792 6.42002 6.61128 6.70905 6.79483 6.89908 6.99621 7.52199 7.59722 7.73414 7.82706 8.25213 8.44924 9.22098 9.82339 10.47749 11.40166 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.003275 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.790386 B = 8547.328893 C = 9338.221072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.091 4.091 6 H 0.082 0.918 7 C -0.131 4.131 8 C 0.508 3.492 9 O -0.540 6.540 10 N -0.718 5.718 11 C 0.127 3.873 12 H 0.096 0.904 13 C -0.150 4.150 14 C 0.178 3.822 15 N -0.604 5.604 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.130 3.870 25 C 0.050 3.950 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.253 0.747 41 H 0.019 0.981 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 18.286 -13.105 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.164 4.164 5 C -0.111 4.111 6 H 0.101 0.899 7 C -0.171 4.171 8 C 0.294 3.706 9 O -0.417 6.417 10 N -0.369 5.369 11 C 0.022 3.978 12 H 0.114 0.886 13 C -0.188 4.188 14 C 0.053 3.947 15 N -0.331 5.331 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.215 1.215 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.002 3.998 25 C -0.077 4.077 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.230 0.770 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.601 17.745 -13.173 22.108 hybrid contribution -0.193 -0.483 0.834 0.983 sum -0.793 17.262 -12.338 21.233 Atomic orbital electron populations 1.22529 0.87787 1.02244 1.00301 1.63596 1.07983 1.14045 1.40615 1.23037 0.95560 0.89827 1.00276 1.22797 0.97858 0.99108 0.96671 1.22114 0.95445 0.95992 0.97544 0.89928 1.21691 0.99202 0.98124 0.98083 1.20640 0.86089 0.81323 0.82519 1.90702 1.18063 1.68181 1.64716 1.46056 1.10116 1.40676 1.40034 1.22340 0.98563 0.88822 0.88124 0.88617 1.23177 0.96689 1.00779 0.98205 1.21154 0.94758 0.86197 0.92567 1.44392 1.56608 1.13102 1.19008 1.19056 1.27264 0.89443 0.99898 0.90393 1.24821 0.99852 0.99106 0.96571 1.69959 1.39026 1.38926 1.09010 0.86139 0.79198 0.82936 0.77526 1.21473 1.20719 1.21713 1.21859 0.98438 0.88102 0.91356 1.22879 0.98696 0.96670 0.89482 0.95443 0.91668 0.91264 0.90370 0.93677 0.90770 0.90380 0.88882 0.88634 0.76956 0.91705 0.92085 0.93125 0.93815 0.93711 0.96371 0.93940 0.90692 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.12 60.07 0.55 0.74 16 2 N -0.54 -5.87 5.44 -239.52 -1.30 -7.18 16 3 C 0.04 0.35 6.73 -2.30 -0.02 0.34 16 4 C -0.13 -0.99 6.52 -24.59 -0.16 -1.15 16 5 C -0.09 -0.93 2.55 -88.80 -0.23 -1.15 16 6 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 7 C -0.13 -1.23 5.09 -27.88 -0.14 -1.37 16 8 C 0.51 7.07 7.62 -10.98 -0.08 6.99 16 9 O -0.54 -9.74 14.49 5.56 0.08 -9.65 16 10 N -0.72 -9.88 5.19 -51.61 -0.27 -10.15 16 11 C 0.13 2.29 3.44 -65.66 -0.23 2.07 16 12 H 0.10 1.94 7.54 -51.93 -0.39 1.55 16 13 C -0.15 -2.68 6.59 -24.89 -0.16 -2.84 16 14 C 0.18 4.30 5.38 -3.06 -0.02 4.29 16 15 N -0.60 -15.77 3.39 -169.93 -0.58 -16.35 16 16 C -0.23 -6.53 10.26 -15.06 -0.15 -6.68 16 17 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -27.23 10.36 55.49 0.57 -26.66 16 20 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.13 2.82 6.93 -2.41 -0.02 2.80 16 25 C 0.05 0.60 5.49 -2.84 -0.02 0.59 16 26 H 0.03 0.27 8.10 -51.93 -0.42 -0.15 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.38 7.78 -51.93 -0.40 -0.03 16 31 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.40 4.21 8.57 -40.82 -0.35 3.86 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 38 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 39 H 0.04 1.15 7.61 -51.93 -0.40 0.76 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.96 7.77 -51.93 -0.40 0.55 16 44 H 0.07 0.95 7.11 -51.93 -0.37 0.58 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -32.73 346.19 -9.78 -42.51 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.71 Total: 0.55 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.77 Total: 4.31 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -1.57 Total: -60.34 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.73 -9.78 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015994349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.136 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds