Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.90821 * 2 1 4 4 C 1.53994 * 109.91630 * 238.89786 * 2 1 3 5 5 H 1.08998 * 110.39329 * 120.46094 * 4 2 1 6 6 C 1.50698 * 110.30813 * 358.33579 * 4 2 1 7 7 O 1.21282 * 120.00249 * 276.38360 * 6 4 2 8 8 N 1.34779 * 120.00050 * 96.38470 * 6 4 2 9 9 C 1.47026 * 125.64697 * 359.68904 * 8 6 4 10 10 C 1.54328 * 107.26841 * 178.85315 * 9 8 6 11 11 C 1.55158 * 103.01856 * 338.13978 * 10 9 8 12 12 H 1.09001 * 111.04103 * 277.21804 * 11 10 9 13 13 N 1.46505 * 111.00580 * 153.37895 * 11 10 9 14 14 C 1.36942 * 119.99522 * 92.80612 * 13 11 10 15 15 H 1.07997 * 120.00244 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99593 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00219 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99863 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47127 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47292 * 119.99444 * 18 16 14 21 21 H 1.48504 * 109.47143 * 239.99552 * 18 16 14 22 22 C 1.47426 * 125.65361 * 180.02562 * 8 6 4 23 23 C 1.54596 * 105.14035 * 239.42122 * 4 2 1 24 24 C 1.54934 * 103.07906 * 337.95427 * 23 4 2 25 25 N 1.47896 * 109.91975 * 121.30559 * 2 1 3 26 26 C 1.46897 * 111.00446 * 265.19857 * 25 2 1 27 27 H 1.08994 * 109.47554 * 184.04017 * 1 2 3 28 28 H 1.09005 * 109.46909 * 304.04235 * 1 2 3 29 29 H 1.09003 * 109.46956 * 64.03619 * 1 2 3 30 30 H 1.08999 * 109.88435 * 298.39763 * 9 8 6 31 31 H 1.09005 * 109.88337 * 59.56110 * 9 8 6 32 32 H 1.09001 * 110.85302 * 219.67696 * 10 9 8 33 33 H 1.09003 * 110.51837 * 96.44632 * 10 9 8 34 34 H 0.96998 * 120.00374 * 272.80733 * 13 11 10 35 35 H 0.97003 * 120.00284 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.35905 * 322.92742 * 22 8 6 37 37 H 1.08998 * 110.36619 * 85.13799 * 22 8 6 38 38 H 1.09002 * 110.72276 * 96.39913 * 23 4 2 39 39 H 1.08996 * 110.72640 * 219.50792 * 23 4 2 40 40 H 1.09008 * 110.66883 * 155.93774 * 24 23 4 41 41 H 1.09004 * 110.66933 * 279.06500 * 24 23 4 42 42 H 1.09003 * 109.46798 * 59.99308 * 26 25 2 43 43 H 1.08998 * 109.47751 * 179.97438 * 26 25 2 44 44 H 1.09005 * 109.46807 * 300.00115 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2397 5 1 2.6709 -0.0872 -1.8493 6 6 0.9045 -1.2857 -2.0516 7 8 0.3948 -2.3450 -1.7536 8 7 0.4423 -0.5893 -3.1090 9 6 0.9606 0.7051 -3.5753 10 6 0.1470 1.1009 -4.8255 11 6 -0.4126 -0.2581 -5.3229 12 1 0.3249 -0.7880 -5.9257 13 7 -1.6597 -0.0711 -6.0687 14 6 -1.6283 0.0722 -7.4302 15 1 -0.6842 0.0479 -7.9542 16 6 -2.8099 0.2499 -8.1368 17 7 -3.9603 0.2801 -7.4982 18 14 -2.7671 0.4447 -9.9941 19 1 -1.3612 0.3744 -10.4670 20 1 -3.5568 -0.6436 -10.6243 21 1 -3.3494 1.7589 -10.3675 22 6 -0.6711 -0.9960 -3.9855 23 6 2.9059 -1.9105 -0.6797 24 6 3.2722 -1.4224 0.7444 25 7 2.0339 -0.7225 1.1880 26 6 2.3212 0.2082 2.2876 27 1 -0.3634 -1.0250 0.0724 28 1 -0.3633 0.5753 0.8516 29 1 -0.3633 0.4499 -0.9240 30 1 0.8357 1.4569 -2.7960 31 1 2.0148 0.6102 -3.8360 32 1 0.7907 1.5524 -5.5805 33 1 -0.6646 1.7764 -4.5551 34 1 -2.5076 -0.0488 -5.5981 35 1 -4.7860 0.4046 -7.9919 36 1 -0.6582 -2.0751 -4.1390 37 1 -1.6241 -0.6859 -3.5569 38 1 2.3213 -2.8294 -0.6340 39 1 3.8036 -2.0555 -1.2805 40 1 3.4947 -2.2679 1.3955 41 1 4.1139 -0.7307 0.7094 42 1 1.4095 0.7390 2.5619 43 1 2.6897 -0.3493 3.1487 44 1 3.0771 0.9256 1.9682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018864913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -11.497736 kcal Electronic energy + Delta-G solvation = -22902.685565 eV Core-core repulsion = 19662.238438 eV Total energy + Delta-G solvation = -3240.447127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61592 -38.61469 -37.04083 -34.16085 -32.59636 -31.69358 -31.24818 -29.53728 -28.05443 -26.48421 -25.09040 -23.88936 -22.91098 -21.51164 -20.87323 -20.10298 -18.43546 -17.39162 -17.18417 -16.21434 -15.93136 -15.49911 -15.05914 -14.58032 -14.50736 -14.10589 -13.65759 -13.30781 -13.22220 -12.90350 -12.80527 -12.49287 -12.41762 -12.20624 -11.93876 -11.81307 -11.61883 -11.50621 -11.31538 -11.19823 -11.02303 -10.91518 -10.82915 -10.71681 -10.29727 -10.06726 -9.80298 -9.55124 -8.99223 -8.69534 -8.38291 -7.07304 -5.84605 -3.15253 2.75918 3.14276 3.39269 3.45207 3.47342 3.69348 4.31974 4.38688 4.52782 4.60273 4.93822 4.98054 5.02490 5.04529 5.13845 5.19602 5.26059 5.28352 5.32793 5.46833 5.54341 5.56367 5.58141 5.63087 5.64815 5.76052 5.78669 5.86033 5.97412 6.06620 6.13281 6.24656 6.29663 6.36658 6.54522 6.60652 6.64604 6.79464 6.88051 7.63672 7.75312 8.32350 8.36455 9.44481 9.98467 10.33328 11.37596 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042985 B = 0.003295 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.241176 B = 8495.542131 C = 8558.773034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 H 0.058 0.942 4 C -0.116 4.116 5 H 0.092 0.908 6 C 0.543 3.457 7 O -0.538 6.538 8 N -0.614 5.614 9 C 0.101 3.899 10 C -0.156 4.156 11 C 0.172 3.828 12 H 0.066 0.934 13 N -0.714 5.714 14 C -0.245 4.245 15 H 0.073 0.927 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.098 3.902 23 C -0.113 4.113 24 C 0.037 3.963 25 N -0.515 5.515 26 C 0.016 3.984 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.437 1.746 16.436 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 H 0.076 0.924 4 C -0.138 4.138 5 H 0.110 0.890 6 C 0.331 3.669 7 O -0.416 6.416 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.197 4.197 11 C 0.060 3.940 12 H 0.084 0.916 13 N -0.354 5.354 14 C -0.376 4.376 15 H 0.091 0.909 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.026 4.026 23 C -0.151 4.151 24 C -0.091 4.091 25 N -0.239 5.239 26 C -0.132 4.132 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 14.811 0.781 16.654 22.300 hybrid contribution 0.324 1.037 -1.139 1.574 sum 15.135 1.819 15.515 21.751 Atomic orbital electron populations 1.21961 0.93350 1.03823 1.01553 1.22195 0.96967 0.95261 0.88184 0.92366 1.22236 0.96108 0.98971 0.96485 0.88976 1.19762 0.83983 0.83965 0.79221 1.90687 1.59710 1.22657 1.68498 1.48504 1.35156 1.22045 1.29101 1.22091 0.98147 0.84649 0.97339 1.23425 0.99696 1.01602 0.94956 1.21296 0.90626 0.92042 0.90031 0.91573 1.42277 1.02465 1.86222 1.04420 1.19270 0.93058 1.42351 0.82899 0.90921 1.24776 0.95297 1.02448 0.98141 1.69671 0.97066 1.56378 1.34584 0.86101 0.77310 0.77319 0.85318 1.20485 1.21764 1.21803 1.22590 0.88929 1.00478 0.90564 1.22514 0.99153 0.98684 0.94724 1.23322 0.91072 0.98472 0.96233 1.64826 1.26499 1.26303 1.06306 1.22521 1.00623 0.95245 0.94855 0.90541 0.92593 0.91943 0.92179 0.92049 0.90716 0.90625 0.77926 0.93381 0.90631 0.91471 0.88630 0.90692 0.89597 0.93645 0.91275 0.91175 0.95478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.37 37.16 0.31 -1.56 16 2 C 0.08 0.91 3.08 -66.65 -0.21 0.71 16 3 H 0.06 0.56 7.74 -51.93 -0.40 0.16 16 4 C -0.12 -1.34 3.01 -90.42 -0.27 -1.61 16 5 H 0.09 0.90 6.99 -51.93 -0.36 0.54 16 6 C 0.54 8.26 4.74 -10.99 -0.05 8.21 16 7 O -0.54 -10.13 15.16 5.56 0.08 -10.05 16 8 N -0.61 -9.28 2.95 -170.50 -0.50 -9.78 16 9 C 0.10 1.29 6.12 -3.06 -0.02 1.27 16 10 C -0.16 -2.45 6.64 -24.89 -0.17 -2.61 16 11 C 0.17 3.27 3.72 -65.77 -0.24 3.03 16 12 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 13 N -0.71 -17.21 5.25 -51.34 -0.27 -17.48 16 14 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 18 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 C 0.10 1.73 6.55 -2.52 -0.02 1.71 16 23 C -0.11 -1.20 6.54 -24.87 -0.16 -1.36 16 24 C 0.04 0.33 6.59 -1.63 -0.01 0.32 16 25 N -0.51 -5.47 5.19 -230.37 -1.20 -6.66 16 26 C 0.02 0.13 9.40 60.06 0.56 0.70 16 27 H 0.08 1.17 6.99 -51.93 -0.36 0.81 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.82 7.12 -51.93 -0.37 0.45 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.67 7.78 -51.93 -0.40 0.27 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.39 9.96 7.76 -40.82 -0.32 9.65 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.42 8.04 -51.93 -0.42 1.01 16 37 H 0.07 1.24 8.01 -51.93 -0.42 0.82 16 38 H 0.10 1.25 6.94 -51.93 -0.36 0.89 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.05 0.35 7.97 -51.93 -0.41 -0.06 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.03 0.20 8.01 -51.93 -0.42 -0.22 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -30.89 345.45 -9.09 -39.98 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.59 Total: 6.98 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.52 Total: 1.72 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -1.24 Total: -60.66 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.89 -9.09 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018864913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.479 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds