Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.90821 * 2 1 4 4 C 1.53994 * 109.91630 * 238.89786 * 2 1 3 5 5 H 1.08998 * 110.39329 * 120.46094 * 4 2 1 6 6 C 1.50698 * 110.30813 * 358.33579 * 4 2 1 7 7 O 1.21282 * 120.00249 * 276.38360 * 6 4 2 8 8 N 1.34779 * 120.00050 * 96.38470 * 6 4 2 9 9 C 1.47026 * 125.64697 * 359.68904 * 8 6 4 10 10 C 1.54328 * 107.26841 * 178.85315 * 9 8 6 11 11 C 1.55158 * 103.01856 * 338.13978 * 10 9 8 12 12 H 1.09001 * 111.04103 * 277.21804 * 11 10 9 13 13 N 1.46505 * 111.00580 * 153.37895 * 11 10 9 14 14 C 1.36942 * 119.99522 * 92.80612 * 13 11 10 15 15 H 1.07997 * 120.00244 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99593 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00219 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99863 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47127 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47292 * 119.99444 * 18 16 14 21 21 H 1.48504 * 109.47143 * 239.99552 * 18 16 14 22 22 C 1.47426 * 125.65361 * 180.02562 * 8 6 4 23 23 C 1.54596 * 105.14035 * 239.42122 * 4 2 1 24 24 C 1.54934 * 103.07906 * 337.95427 * 23 4 2 25 25 N 1.47896 * 109.91975 * 121.30559 * 2 1 3 26 26 C 1.46897 * 111.00446 * 265.19857 * 25 2 1 27 27 H 1.08994 * 109.47554 * 184.04017 * 1 2 3 28 28 H 1.09005 * 109.46909 * 304.04235 * 1 2 3 29 29 H 1.09003 * 109.46956 * 64.03619 * 1 2 3 30 30 H 1.08999 * 109.88435 * 298.39763 * 9 8 6 31 31 H 1.09005 * 109.88337 * 59.56110 * 9 8 6 32 32 H 1.09001 * 110.85302 * 219.67696 * 10 9 8 33 33 H 1.09003 * 110.51837 * 96.44632 * 10 9 8 34 34 H 0.96998 * 120.00374 * 272.80733 * 13 11 10 35 35 H 0.97003 * 120.00284 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.35905 * 322.92742 * 22 8 6 37 37 H 1.08998 * 110.36619 * 85.13799 * 22 8 6 38 38 H 1.09002 * 110.72276 * 96.39913 * 23 4 2 39 39 H 1.08996 * 110.72640 * 219.50792 * 23 4 2 40 40 H 1.09008 * 110.66883 * 155.93774 * 24 23 4 41 41 H 1.09004 * 110.66933 * 279.06500 * 24 23 4 42 42 H 1.09003 * 109.46798 * 59.99308 * 26 25 2 43 43 H 1.08998 * 109.47751 * 179.97438 * 26 25 2 44 44 H 1.09005 * 109.46807 * 300.00115 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2397 5 1 2.6709 -0.0872 -1.8493 6 6 0.9045 -1.2857 -2.0516 7 8 0.3948 -2.3450 -1.7536 8 7 0.4423 -0.5893 -3.1090 9 6 0.9606 0.7051 -3.5753 10 6 0.1470 1.1009 -4.8255 11 6 -0.4126 -0.2581 -5.3229 12 1 0.3249 -0.7880 -5.9257 13 7 -1.6597 -0.0711 -6.0687 14 6 -1.6283 0.0722 -7.4302 15 1 -0.6842 0.0479 -7.9542 16 6 -2.8099 0.2499 -8.1368 17 7 -3.9603 0.2801 -7.4982 18 14 -2.7671 0.4447 -9.9941 19 1 -1.3612 0.3744 -10.4670 20 1 -3.5568 -0.6436 -10.6243 21 1 -3.3494 1.7589 -10.3675 22 6 -0.6711 -0.9960 -3.9855 23 6 2.9059 -1.9105 -0.6797 24 6 3.2722 -1.4224 0.7444 25 7 2.0339 -0.7225 1.1880 26 6 2.3212 0.2082 2.2876 27 1 -0.3634 -1.0250 0.0724 28 1 -0.3633 0.5753 0.8516 29 1 -0.3633 0.4499 -0.9240 30 1 0.8357 1.4569 -2.7960 31 1 2.0148 0.6102 -3.8360 32 1 0.7907 1.5524 -5.5805 33 1 -0.6646 1.7764 -4.5551 34 1 -2.5076 -0.0488 -5.5981 35 1 -4.7860 0.4046 -7.9919 36 1 -0.6582 -2.0751 -4.1390 37 1 -1.6241 -0.6859 -3.5569 38 1 2.3213 -2.8294 -0.6340 39 1 3.8036 -2.0555 -1.2805 40 1 3.4947 -2.2679 1.3955 41 1 4.1139 -0.7307 0.7094 42 1 1.4095 0.7390 2.5619 43 1 2.6897 -0.3493 3.1487 44 1 3.0771 0.9256 1.9682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018864913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -33.127077 kcal Electronic energy + Delta-G solvation = -22903.623483 eV Core-core repulsion = 19662.238438 eV Total energy + Delta-G solvation = -3241.385045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69945 -39.69043 -38.33682 -35.93724 -33.68440 -32.99950 -32.38006 -30.97893 -29.49698 -27.48171 -25.85830 -25.65280 -24.29192 -22.41804 -21.77884 -21.60644 -19.56633 -19.32473 -18.27507 -17.44096 -17.00070 -16.59035 -16.29534 -16.01399 -15.52066 -15.34295 -15.19593 -14.68216 -14.43214 -14.11021 -13.85534 -13.59785 -13.46695 -13.23001 -13.13752 -13.08532 -13.00975 -12.72724 -12.68096 -12.34614 -12.24325 -12.12231 -12.08722 -11.90892 -11.77423 -11.66135 -11.60614 -10.96428 -10.80407 -9.65357 -9.38247 -9.05508 -7.95653 -5.25938 1.49052 1.49972 1.58931 1.59783 1.92862 2.56853 2.97652 3.32219 3.41552 3.53758 3.68776 3.73850 3.96138 4.02294 4.16683 4.24715 4.27252 4.29367 4.34474 4.44110 4.48645 4.50608 4.53619 4.67933 4.70707 4.77419 4.80537 4.84960 4.95651 4.97122 5.02349 5.04952 5.18466 5.25684 5.28589 5.30168 5.42104 5.53776 5.90826 6.11700 6.25125 6.56269 7.15896 7.31774 8.03241 8.27198 9.27894 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042985 B = 0.003295 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.241176 B = 8495.542131 C = 8558.773034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.085 0.915 4 C -0.111 4.111 5 H 0.123 0.877 6 C 0.539 3.461 7 O -0.583 6.583 8 N -0.613 5.613 9 C 0.107 3.893 10 C -0.144 4.144 11 C 0.166 3.834 12 H 0.065 0.935 13 N -0.729 5.729 14 C -0.239 4.239 15 H 0.082 0.918 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.297 1.297 21 H -0.293 1.293 22 C 0.107 3.893 23 C -0.114 4.114 24 C 0.043 3.957 25 N -0.541 5.541 26 C 0.017 3.983 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.374 0.626 35 H 0.251 0.749 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.688 3.383 17.002 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.102 0.898 4 C -0.132 4.132 5 H 0.141 0.859 6 C 0.330 3.670 7 O -0.463 6.463 8 N -0.347 5.347 9 C -0.016 4.016 10 C -0.185 4.185 11 C 0.056 3.944 12 H 0.083 0.917 13 N -0.368 5.368 14 C -0.371 4.371 15 H 0.100 0.900 16 C -0.267 4.267 17 N -0.620 5.620 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.225 1.225 21 H -0.221 1.221 22 C -0.017 4.017 23 C -0.152 4.152 24 C -0.085 4.085 25 N -0.266 5.266 26 C -0.131 4.131 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.206 0.794 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.143 2.437 17.242 25.147 hybrid contribution -0.664 0.465 -1.227 1.470 sum 17.479 2.902 16.015 23.883 Atomic orbital electron populations 1.21881 0.95216 1.01531 1.01564 1.22188 0.95437 0.96505 0.88154 0.89763 1.22334 0.94668 0.99765 0.96457 0.85906 1.20535 0.84400 0.83249 0.78836 1.90670 1.61303 1.24838 1.69537 1.48565 1.34333 1.22963 1.28806 1.22229 0.99056 0.83763 0.96502 1.23208 0.99765 0.98847 0.96645 1.21454 0.88734 0.94289 0.89932 0.91738 1.42436 1.03686 1.86629 1.04068 1.19664 0.93208 1.40071 0.84157 0.90027 1.25585 0.95141 1.03566 1.02424 1.69829 0.97516 1.58648 1.36021 0.85067 0.77835 0.76549 0.80247 1.18680 1.22468 1.22062 1.22235 0.89663 0.99108 0.90729 1.22521 0.99315 0.96979 0.96390 1.23333 0.91160 0.98977 0.94982 1.64770 1.27771 1.27329 1.06729 1.22554 1.01049 0.95231 0.94299 0.94125 0.91441 0.92841 0.89485 0.88711 0.89467 0.91950 0.79436 0.94018 0.92629 0.92922 0.91971 0.88481 0.89232 0.91208 0.91460 0.90417 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.37 71.98 0.60 -2.90 16 2 C 0.09 1.65 3.08 45.06 0.14 1.79 16 3 H 0.08 1.22 7.74 -2.39 -0.02 1.21 16 4 C -0.11 -2.24 3.01 -10.66 -0.03 -2.28 16 5 H 0.12 1.76 6.99 -2.39 -0.02 1.74 16 6 C 0.54 16.03 4.74 87.66 0.42 16.45 16 7 O -0.58 -22.71 15.16 -3.03 -0.05 -22.75 16 8 N -0.61 -17.84 2.95 -811.74 -2.40 -20.24 16 9 C 0.11 2.35 6.12 86.73 0.53 2.88 16 10 C -0.14 -4.25 6.64 31.78 0.21 -4.04 16 11 C 0.17 6.27 3.72 46.39 0.17 6.45 16 12 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 13 N -0.73 -35.77 5.25 -316.33 -1.66 -37.43 16 14 C -0.24 -12.83 9.96 84.03 0.84 -12.00 16 15 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 17 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 18 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 C 0.11 3.88 6.55 86.86 0.57 4.45 16 23 C -0.11 -2.18 6.54 31.80 0.21 -1.97 16 24 C 0.04 0.65 6.59 86.56 0.57 1.22 16 25 N -0.54 -10.16 5.19 -882.76 -4.58 -14.74 16 26 C 0.02 0.22 9.40 127.69 1.20 1.42 16 27 H 0.04 1.27 6.99 -2.39 -0.02 1.26 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.05 1.36 7.12 -2.39 -0.02 1.34 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.56 7.78 -2.38 -0.02 1.55 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.37 20.01 7.76 -92.71 -0.72 19.29 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.06 2.20 8.04 -2.39 -0.02 2.19 16 37 H 0.05 2.04 8.01 -2.39 -0.02 2.03 16 38 H 0.06 1.63 6.94 -2.39 -0.02 1.61 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.07 0.75 7.97 -2.38 -0.02 0.73 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.04 0.44 8.01 -2.38 -0.02 0.42 16 Total: -1.00 -69.64 345.45 -0.23 -69.87 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.25 Total: 28.84 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.89 Total: 7.74 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -8.36 Total: -130.92 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.64 -0.23 -69.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018864913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.741 kcal (2) G-P(sol) polarization free energy of solvation -69.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds