Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46846 * 110.99884 * 2 1 4 4 C 1.53040 * 109.52324 * 185.83841 * 3 2 1 5 5 C 1.53119 * 109.27628 * 300.82059 * 4 3 2 6 6 C 1.50704 * 109.52138 * 177.56022 * 5 4 3 7 7 O 1.21286 * 120.00051 * 0.12720 * 6 5 4 8 8 N 1.34775 * 120.00128 * 180.13211 * 6 5 4 9 9 C 1.47425 * 125.64742 * 0.03389 * 8 6 5 10 10 C 1.55126 * 104.94022 * 203.97155 * 9 8 6 11 11 C 1.55154 * 101.48848 * 323.22506 * 10 9 8 12 12 H 1.09006 * 110.72067 * 276.82909 * 11 10 9 13 13 N 1.46496 * 110.72212 * 153.73790 * 11 10 9 14 14 C 1.36934 * 120.00548 * 88.83912 * 13 11 10 15 15 H 1.08004 * 119.99288 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00389 * 180.02562 * 14 13 11 17 17 N 1.31624 * 120.00257 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.47021 * 125.64793 * 180.02562 * 8 6 5 23 23 C 1.53119 * 109.21579 * 57.62845 * 5 4 3 24 24 C 1.46850 * 111.00243 * 124.21111 * 2 1 3 25 25 H 1.08994 * 109.46951 * 60.00328 * 1 2 3 26 26 H 1.09002 * 109.46899 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46785 * 299.99572 * 1 2 3 28 28 H 1.09009 * 109.46096 * 65.82863 * 3 2 1 29 29 H 1.08995 * 109.46786 * 305.85518 * 3 2 1 30 30 H 1.08999 * 109.50277 * 180.88616 * 4 3 2 31 31 H 1.08999 * 109.50444 * 60.76551 * 4 3 2 32 32 H 1.08996 * 109.52927 * 297.68634 * 5 4 3 33 33 H 1.08988 * 110.36975 * 322.93638 * 9 8 6 34 34 H 1.09004 * 110.36193 * 85.15259 * 9 8 6 35 35 H 1.09002 * 111.15788 * 205.13127 * 10 9 8 36 36 H 1.08999 * 110.93613 * 81.21850 * 10 9 8 37 37 H 0.96999 * 119.99694 * 268.84436 * 13 11 10 38 38 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.89026 * 59.55322 * 22 8 6 40 40 H 1.09003 * 110.00864 * 298.45825 * 22 8 6 41 41 H 1.08994 * 109.50744 * 62.30892 * 23 5 4 42 42 H 1.08995 * 109.50811 * 182.43573 * 23 5 4 43 43 H 1.08997 * 109.45812 * 294.18056 * 24 2 1 44 44 H 1.09004 * 109.45946 * 54.14170 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0144 6 6 5.6133 0.4464 0.8432 7 8 6.1472 0.9697 -0.1119 8 7 6.3567 -0.2162 1.7513 9 6 5.8402 -0.8962 2.9531 10 6 7.0413 -0.9424 3.9338 11 6 8.2256 -1.1832 2.9608 12 1 8.3223 -2.2433 2.7259 13 7 9.4737 -0.6634 3.5247 14 6 10.2516 -1.4629 4.3189 15 1 9.9451 -2.4769 4.5292 16 6 11.4339 -0.9701 4.8537 17 7 12.1819 -1.7388 5.6166 18 14 11.9643 0.7836 4.4893 19 1 12.8014 0.8029 3.2629 20 1 10.7627 1.6312 4.2818 21 1 12.7504 1.3108 5.6335 22 6 7.8170 -0.3809 1.7075 23 6 3.5184 -0.8715 1.0225 24 6 1.9954 -0.7708 1.1337 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 1.7325 1.8608 0.9377 29 1 1.5635 1.9258 -0.8329 30 1 3.9099 2.3513 -0.1309 31 1 3.7814 0.8569 -1.0906 32 1 3.8897 1.0360 1.9560 33 1 5.0172 -0.3279 3.3863 34 1 5.5142 -1.9067 2.7066 35 1 6.9415 -1.7671 4.6395 36 1 7.1530 0.0068 4.4578 37 1 9.7490 0.2473 3.3356 38 1 13.0083 -1.3945 5.9900 39 1 8.3008 0.5958 1.7185 40 1 8.1040 -0.9264 0.8085 41 1 3.7816 -1.3846 0.0975 42 1 3.9103 -1.4294 1.8729 43 1 1.7325 -0.2709 2.0659 44 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019321637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -15.763878 kcal Electronic energy + Delta-G solvation = -22669.188422 eV Core-core repulsion = 19428.556301 eV Total energy + Delta-G solvation = -3240.632121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.45000 -38.70849 -37.32826 -34.39765 -33.72745 -31.66357 -31.07889 -29.84985 -28.46103 -27.09250 -24.28899 -23.48192 -22.92091 -22.49794 -20.34922 -20.15739 -19.11971 -17.78528 -16.98357 -16.32297 -15.82104 -15.46403 -15.33640 -14.96882 -14.48749 -14.06822 -13.96095 -13.63635 -13.52056 -13.22188 -12.79092 -12.73169 -12.60809 -12.46377 -12.00422 -11.95252 -11.91924 -11.49732 -11.48271 -11.32059 -10.95280 -10.88673 -10.76175 -10.61574 -10.51626 -10.12359 -9.67923 -9.59734 -9.01906 -8.66753 -8.48763 -7.37785 -5.84643 -3.22176 2.71237 3.06889 3.34419 3.38029 3.42687 3.59547 4.33217 4.47230 4.53049 4.58101 4.81275 4.86468 4.90187 4.99791 5.07230 5.15211 5.16223 5.18487 5.26818 5.32750 5.38827 5.47317 5.49940 5.51944 5.53470 5.59811 5.67924 5.77914 5.84044 5.85800 5.96220 6.11416 6.15685 6.24584 6.45683 6.49348 6.72054 6.74454 6.75700 7.65195 7.89314 8.26346 8.33852 9.10495 9.83128 10.01277 11.33040 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039551 B = 0.003379 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.776561 B = 8284.976583 C = 8701.449905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.096 4.096 5 C -0.102 4.102 6 C 0.530 3.470 7 O -0.545 6.545 8 N -0.612 5.612 9 C 0.098 3.902 10 C -0.155 4.155 11 C 0.177 3.823 12 H 0.074 0.926 13 N -0.740 5.740 14 C -0.249 4.249 15 H 0.093 0.907 16 C 0.009 3.991 17 N -0.930 5.930 18 Si 0.883 3.117 19 H -0.282 1.282 20 H -0.277 1.277 21 H -0.290 1.290 22 C 0.097 3.903 23 C -0.115 4.115 24 C 0.058 3.942 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.065 3.320 -8.337 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.134 4.134 5 C -0.124 4.124 6 C 0.319 3.681 7 O -0.422 6.422 8 N -0.346 5.346 9 C -0.026 4.026 10 C -0.196 4.196 11 C 0.066 3.934 12 H 0.092 0.908 13 N -0.382 5.382 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.577 5.577 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.203 1.203 21 H -0.216 1.216 22 C -0.026 4.026 23 C -0.153 4.153 24 C -0.070 4.070 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.522 3.214 -9.195 25.459 hybrid contribution 0.204 1.648 0.752 1.822 sum -23.318 4.862 -8.443 25.272 Atomic orbital electron populations 1.22348 0.87229 1.02100 1.00619 1.61928 1.07556 1.13990 1.43519 1.22135 0.95514 0.88941 1.00581 1.21406 0.93069 1.00526 0.98421 1.21318 0.91427 0.98504 1.01141 1.20243 0.88729 0.77649 0.81502 1.90692 1.73901 1.46884 1.30744 1.48472 1.08297 1.53264 1.24578 1.22523 0.97867 0.96700 0.85465 1.23579 0.94795 1.03130 0.98060 1.21159 0.86131 0.96834 0.89324 0.90774 1.42721 1.22410 1.13453 1.59609 1.19031 1.00695 0.96458 1.21695 0.88968 1.24667 0.97120 0.97599 0.99375 1.69698 1.15141 1.35708 1.37175 0.86579 0.78451 0.85907 0.77753 1.20888 1.20309 1.21629 1.22303 0.79453 1.00983 0.99850 1.21739 0.94419 0.95248 1.03857 1.22087 0.95071 0.98444 0.91389 0.91341 0.91332 0.95734 0.94858 0.90389 0.90756 0.90128 0.89078 0.91243 0.91229 0.90007 0.90791 0.80338 0.92913 0.91587 0.91334 0.90439 0.90061 0.94690 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.59 60.07 0.58 0.74 16 2 N -0.55 -4.73 4.91 -242.95 -1.19 -5.93 16 3 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 4 C -0.10 -1.02 4.68 -26.65 -0.12 -1.14 16 5 C -0.10 -1.11 1.94 -91.65 -0.18 -1.29 16 6 C 0.53 7.86 7.22 -10.98 -0.08 7.78 16 7 O -0.54 -10.10 16.30 5.55 0.09 -10.01 16 8 N -0.61 -8.89 3.32 -170.38 -0.57 -9.45 16 9 C 0.10 1.16 5.15 -2.41 -0.01 1.14 16 10 C -0.15 -2.33 6.79 -24.47 -0.17 -2.50 16 11 C 0.18 3.19 3.59 -66.10 -0.24 2.95 16 12 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 13 N -0.74 -16.83 5.04 -51.66 -0.26 -17.09 16 14 C -0.25 -6.75 10.45 -15.06 -0.16 -6.91 16 15 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -28.58 13.97 55.49 0.78 -27.80 16 18 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 C 0.10 1.64 6.62 -3.07 -0.02 1.62 16 23 C -0.11 -1.06 5.16 -26.65 -0.14 -1.19 16 24 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 33 H 0.07 0.68 7.34 -51.94 -0.38 0.30 16 34 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.36 8.29 5.39 -40.82 -0.22 8.07 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.67 5.09 -51.93 -0.26 0.41 16 43 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -32.17 340.22 -8.96 -41.13 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.54 Total: 4.67 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.67 Total: 2.25 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -1.24 Total: -60.27 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.17 -8.96 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019321637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.366 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds