Wall clock time and date at job start Tue Mar 31 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87830 * 2 1 4 4 C 1.54319 * 109.88941 * 238.96949 * 2 1 3 5 5 C 1.55548 * 102.83083 * 218.18197 * 4 2 1 6 6 C 1.54904 * 101.67008 * 35.68189 * 5 4 2 7 7 N 1.47440 * 109.89028 * 121.03165 * 2 1 3 8 8 C 1.46900 * 110.99858 * 356.31050 * 7 2 1 9 9 C 1.50708 * 109.47065 * 189.99884 * 8 7 2 10 10 O 1.21284 * 120.00077 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99873 * 180.02562 * 9 8 7 12 12 C 1.47025 * 125.64896 * 359.68806 * 11 9 8 13 13 C 1.54339 * 107.26265 * 178.85276 * 12 11 9 14 14 C 1.55156 * 103.02116 * 338.13964 * 13 12 11 15 15 H 1.08998 * 111.00826 * 277.23383 * 14 13 12 16 16 N 1.46506 * 111.00291 * 153.38114 * 14 13 12 17 17 C 1.36938 * 119.99931 * 92.80534 * 16 14 13 18 18 H 1.08001 * 119.99958 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99970 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99827 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99744 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47201 * 60.00328 * 21 19 17 23 23 H 1.48499 * 109.46772 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47339 * 299.99742 * 21 19 17 25 25 C 1.47430 * 125.64825 * 180.02562 * 11 9 8 26 26 H 1.09002 * 109.46878 * 299.29767 * 1 2 3 27 27 H 1.08997 * 109.47270 * 59.29727 * 1 2 3 28 28 H 1.09006 * 109.46791 * 179.29897 * 1 2 3 29 29 H 1.09003 * 110.70176 * 336.53039 * 4 2 1 30 30 H 1.08994 * 110.70618 * 99.76110 * 4 2 1 31 31 H 1.09000 * 111.01334 * 277.57462 * 5 4 2 32 32 H 1.08995 * 110.98733 * 153.77906 * 5 4 2 33 33 H 1.09001 * 110.37509 * 204.06739 * 6 5 4 34 34 H 1.09000 * 110.37496 * 81.72379 * 6 5 4 35 35 H 1.08990 * 109.47423 * 309.99932 * 8 7 2 36 36 H 1.09003 * 109.47468 * 70.00235 * 8 7 2 37 37 H 1.08998 * 109.88341 * 298.39850 * 12 11 9 38 38 H 1.09004 * 109.87922 * 59.56765 * 12 11 9 39 39 H 1.09004 * 110.84460 * 219.67401 * 13 12 11 40 40 H 1.08996 * 110.66559 * 96.52867 * 13 12 11 41 41 H 0.96993 * 119.99938 * 272.80796 * 16 14 13 42 42 H 0.97009 * 119.99783 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.36280 * 322.92825 * 25 11 9 44 44 H 1.09001 * 110.36327 * 85.13754 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0550 -0.7481 -1.2435 5 6 3.2936 -1.5098 -0.6910 6 6 2.8223 -1.8800 0.7374 7 7 2.0316 -0.7147 1.1880 8 6 0.9238 -1.1343 2.0567 9 6 1.4749 -1.6372 3.3661 10 8 2.6726 -1.6457 3.5568 11 7 0.6368 -2.0785 4.3249 12 6 -0.8298 -2.1185 4.2290 13 6 -1.3586 -2.7232 5.5469 14 6 -0.1336 -3.5061 6.0886 15 1 -0.0613 -4.4892 5.6235 16 7 -0.1873 -3.6208 7.5482 17 6 -0.7657 -4.7183 8.1280 18 1 -1.1819 -5.4995 7.5092 19 6 -0.8170 -4.8267 9.5109 20 7 -0.3093 -3.8748 10.2649 21 14 -1.6067 -6.3235 10.3017 22 1 -0.8855 -7.5486 9.8724 23 1 -1.5335 -6.1990 11.7796 24 1 -3.0283 -6.4132 9.8818 25 6 1.0384 -2.5945 5.6463 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0277 -0.0126 29 1 1.3066 -1.4468 -1.6173 30 1 2.3487 -0.0436 -2.0216 31 1 4.1687 -0.8607 -0.6574 32 1 3.4960 -2.4046 -1.2795 33 1 3.6800 -2.0328 1.3924 34 1 2.1993 -2.7741 0.7117 35 1 0.2655 -0.2856 2.2416 36 1 0.3615 -1.9309 1.5693 37 1 -1.2205 -1.1093 4.0989 38 1 -1.1294 -2.7455 3.3892 39 1 -2.1938 -3.3973 5.3567 40 1 -1.6510 -1.9356 6.2414 41 1 0.1868 -2.9193 8.1039 42 1 -0.3455 -3.9504 11.2313 43 1 1.9586 -3.1728 5.5640 44 1 1.1692 -1.7729 6.3506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019380819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:03 Heat of formation + Delta-G solvation = -6.297377 kcal Electronic energy + Delta-G solvation = -22495.287913 eV Core-core repulsion = 19255.066291 eV Total energy + Delta-G solvation = -3240.221622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28244 -38.97252 -37.06363 -34.13285 -32.62829 -31.53073 -31.38825 -29.54101 -28.24037 -26.24981 -25.74719 -23.59965 -22.70741 -21.51891 -20.28991 -19.97314 -18.71537 -17.41959 -17.25847 -16.16567 -15.92195 -15.84563 -15.07727 -14.68929 -14.26118 -14.13129 -13.80323 -13.43213 -13.22205 -13.00225 -12.84549 -12.61594 -12.50983 -12.20962 -11.95545 -11.74856 -11.62204 -11.45576 -11.21204 -11.18054 -11.03098 -10.88527 -10.85024 -10.71540 -10.30876 -10.09965 -9.78827 -9.54009 -8.97554 -8.43280 -8.33885 -7.06710 -5.83603 -3.14357 2.84489 3.05511 3.40466 3.45214 3.46225 3.84891 4.34879 4.42703 4.53560 4.57161 4.72385 4.97109 5.01490 5.03526 5.06758 5.16506 5.22585 5.28001 5.31770 5.35995 5.41136 5.54107 5.57928 5.59290 5.70053 5.73864 5.76246 5.83326 5.97714 6.01617 6.07189 6.13985 6.26703 6.37444 6.54393 6.60660 6.80791 6.84799 6.89756 7.63173 7.78753 8.33622 8.42678 9.45272 9.99383 10.34355 11.38491 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041495 B = 0.003044 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.624568 B = 9196.183201 C = 9406.072217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.067 3.933 3 H 0.088 0.912 4 C -0.138 4.138 5 C -0.131 4.131 6 C 0.046 3.954 7 N -0.508 5.508 8 C 0.034 3.966 9 C 0.524 3.476 10 O -0.529 6.529 11 N -0.617 5.617 12 C 0.102 3.898 13 C -0.156 4.156 14 C 0.172 3.828 15 H 0.066 0.934 16 N -0.714 5.714 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.099 3.901 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 7.028 -23.001 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.041 4.041 3 H 0.106 0.894 4 C -0.177 4.177 5 C -0.169 4.169 6 C -0.081 4.081 7 N -0.232 5.232 8 C -0.097 4.097 9 C 0.311 3.689 10 O -0.405 6.405 11 N -0.352 5.352 12 C -0.022 4.022 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.354 5.354 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.024 4.024 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.123 7.215 -22.567 23.718 hybrid contribution -1.090 -1.044 0.251 1.530 sum 0.033 6.170 -22.316 23.153 Atomic orbital electron populations 1.22437 0.95870 1.02200 1.02604 1.22493 0.93805 0.99068 0.88716 0.89412 1.22949 0.97806 0.99408 0.97510 1.22790 0.98057 1.00316 0.95730 1.23109 0.98494 0.91133 0.95370 1.63430 1.20216 1.23863 1.15692 1.22265 0.94135 1.00974 0.92331 1.20163 0.86258 0.77764 0.84679 1.90681 1.14840 1.54592 1.80351 1.48478 1.07262 1.63286 1.16193 1.22080 0.80029 1.00283 0.99792 1.23423 1.00876 1.00870 0.94547 1.21291 0.90379 0.95537 0.86794 0.91623 1.42258 1.70110 1.24329 0.98665 1.19181 1.30815 0.97895 0.89853 0.91033 1.24775 1.01316 0.98350 0.96165 1.69655 1.50245 1.33517 1.04326 0.86240 0.79066 0.82348 0.78332 1.21164 1.21631 1.21181 1.22573 0.99457 0.97733 0.82640 0.91580 0.91882 0.92335 0.91390 0.90750 0.90558 0.90908 0.88952 0.94057 0.87602 0.91877 0.92137 0.92149 0.90753 0.90596 0.77909 0.93271 0.90701 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 7.84 37.16 0.29 -0.94 16 2 C 0.07 0.59 4.01 -66.72 -0.27 0.32 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.14 -1.04 6.50 -24.69 -0.16 -1.20 16 5 C -0.13 -1.13 7.09 -24.37 -0.17 -1.30 16 6 C 0.05 0.53 5.75 -2.30 -0.01 0.52 16 7 N -0.51 -6.03 4.86 -224.77 -1.09 -7.12 16 8 C 0.03 0.40 3.37 -4.97 -0.02 0.38 16 9 C 0.52 8.25 7.65 -10.98 -0.08 8.16 16 10 O -0.53 -10.27 15.29 5.55 0.08 -10.18 16 11 N -0.62 -9.56 3.33 -170.49 -0.57 -10.13 16 12 C 0.10 1.31 6.49 -3.05 -0.02 1.29 16 13 C -0.16 -2.48 6.64 -24.89 -0.17 -2.65 16 14 C 0.17 3.31 3.72 -65.77 -0.24 3.07 16 15 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 16 N -0.71 -17.35 5.24 -51.34 -0.27 -17.62 16 17 C -0.25 -6.63 9.96 -15.06 -0.15 -6.78 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.10 1.79 6.55 -2.52 -0.02 1.78 16 26 H 0.07 0.47 6.36 -51.93 -0.33 0.14 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 6.97 -51.93 -0.36 0.06 16 29 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.28 7.38 -51.93 -0.38 0.90 16 34 H 0.04 0.47 7.62 -51.93 -0.40 0.08 16 35 H 0.11 1.07 6.05 -51.93 -0.31 0.76 16 36 H 0.06 0.65 6.84 -51.93 -0.36 0.29 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.39 10.05 7.76 -40.82 -0.32 9.73 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 44 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -31.36 344.10 -9.54 -40.91 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.47 Total: 6.67 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.12 Total: 2.28 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.20 Total: -61.74 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.36 -9.54 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019380819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.609 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds