Wall clock time and date at job start Tue Mar 31 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.88146 * 2 1 4 4 C 1.54315 * 109.89002 * 121.20258 * 2 1 3 5 5 C 1.55143 * 103.02009 * 141.68644 * 4 2 1 6 6 C 1.54910 * 101.65236 * 324.34837 * 5 4 2 7 7 N 1.47448 * 109.88532 * 238.97122 * 2 1 3 8 8 C 1.46901 * 111.00074 * 3.85161 * 7 2 1 9 9 C 1.50695 * 109.47127 * 168.56424 * 8 7 2 10 10 O 1.21285 * 120.00386 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00272 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.64469 * 0.02562 * 11 9 8 13 13 C 1.54910 * 104.83152 * 204.09450 * 12 11 9 14 14 C 1.55150 * 101.58071 * 322.99242 * 13 12 11 15 15 H 1.08995 * 110.72258 * 276.95712 * 14 13 12 16 16 N 1.46506 * 110.71610 * 153.86624 * 14 13 12 17 17 C 1.36940 * 120.00085 * 86.45485 * 16 14 13 18 18 H 1.08002 * 120.00049 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00077 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99881 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47169 * 59.99776 * 21 19 17 23 23 H 1.48495 * 109.47218 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46937 * 300.00010 * 21 19 17 25 25 C 1.47020 * 125.65056 * 179.71647 * 11 9 8 26 26 H 1.09000 * 109.47109 * 174.94480 * 1 2 3 27 27 H 1.08999 * 109.46324 * 294.94365 * 1 2 3 28 28 H 1.08996 * 109.47297 * 54.94463 * 1 2 3 29 29 H 1.08996 * 110.70687 * 260.06497 * 4 2 1 30 30 H 1.08993 * 110.70918 * 23.30387 * 4 2 1 31 31 H 1.09006 * 110.99251 * 82.43643 * 5 4 2 32 32 H 1.09004 * 110.99179 * 206.25175 * 5 4 2 33 33 H 1.09005 * 110.36935 * 278.23741 * 6 5 4 34 34 H 1.09001 * 110.37319 * 155.89936 * 6 5 4 35 35 H 1.08998 * 109.46884 * 48.55829 * 8 7 2 36 36 H 1.09006 * 109.46716 * 288.56312 * 8 7 2 37 37 H 1.09003 * 110.36715 * 322.93913 * 12 11 9 38 38 H 1.09004 * 110.36424 * 85.14661 * 12 11 9 39 39 H 1.09000 * 111.00317 * 81.07312 * 13 12 11 40 40 H 1.09001 * 111.00325 * 204.91811 * 13 12 11 41 41 H 0.97002 * 119.99840 * 266.44901 * 16 14 13 42 42 H 0.97001 * 120.00174 * 179.97438 * 20 19 17 43 43 H 1.08992 * 109.88077 * 298.38986 * 25 11 9 44 44 H 1.08996 * 109.88285 * 59.55670 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0550 -0.7518 1.2412 5 6 3.2892 -1.5145 0.6917 6 6 2.8188 -1.8822 -0.7377 7 7 2.0315 -0.7147 -1.1882 8 6 0.9239 -1.1309 -2.0587 9 6 1.4733 -1.6006 -3.3809 10 8 2.6699 -1.5894 -3.5789 11 7 0.6351 -2.0323 -4.3440 12 6 -0.8340 -2.0973 -4.2386 13 6 -1.2575 -3.1795 -5.2629 14 6 -0.2543 -2.9242 -6.4185 15 1 -0.6040 -2.1164 -7.0614 16 7 -0.0380 -4.1465 -7.1966 17 6 -0.8805 -4.4585 -8.2300 18 1 -1.7048 -3.8037 -8.4713 19 6 -0.6752 -5.6165 -8.9675 20 7 0.3296 -6.4143 -8.6738 21 14 -1.8249 -6.0424 -10.3768 22 1 -1.7865 -4.9591 -11.3917 23 1 -1.3933 -7.3199 -10.9989 24 1 -3.2094 -6.1873 -9.8595 25 6 1.0338 -2.5104 -5.6759 26 1 -0.3633 -1.0237 -0.0906 27 1 -0.3632 0.4334 0.9318 28 1 -0.3634 0.5902 -0.8412 29 1 2.3515 -0.0495 2.0203 30 1 1.3057 -1.4495 1.6147 31 1 4.1658 -0.8675 0.6599 32 1 3.4882 -2.4104 1.2799 33 1 2.1939 -2.7750 -0.7136 34 1 3.6771 -2.0363 -1.3917 35 1 0.2539 -0.2869 -2.2228 36 1 0.3745 -1.9440 -1.5840 37 1 -1.1294 -2.3917 -3.2315 38 1 -1.2757 -1.1348 -4.4966 39 1 -1.1308 -4.1799 -4.8492 40 1 -2.2839 -3.0229 -5.5948 41 1 0.7022 -4.7348 -6.9797 42 1 0.4729 -7.2236 -9.1889 43 1 1.5379 -1.7122 -6.2206 44 1 1.6957 -3.3708 -5.5782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019380820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:05 Heat of formation + Delta-G solvation = -5.670719 kcal Electronic energy + Delta-G solvation = -22535.513556 eV Core-core repulsion = 19295.319107 eV Total energy + Delta-G solvation = -3240.194448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27541 -38.97825 -37.06528 -34.11541 -32.63442 -31.52071 -31.37657 -29.51227 -28.25966 -26.24531 -25.73834 -23.58630 -22.72834 -21.49782 -20.35565 -19.85882 -18.75113 -17.39358 -17.30097 -16.09925 -16.00543 -15.68825 -15.00497 -14.75890 -14.52948 -13.93103 -13.59950 -13.50807 -13.31409 -13.09582 -12.71253 -12.62187 -12.53181 -12.24687 -11.83183 -11.70789 -11.64129 -11.45225 -11.20165 -11.16939 -11.04041 -10.85830 -10.84388 -10.70757 -10.35362 -10.11251 -9.76807 -9.53326 -8.97109 -8.41698 -8.33166 -7.05209 -5.82637 -3.13434 2.86394 3.06320 3.40694 3.45319 3.46525 3.85943 4.36333 4.43268 4.53889 4.57996 4.73413 4.95567 5.02258 5.04622 5.09247 5.17160 5.21589 5.30120 5.32050 5.38616 5.41981 5.55015 5.55522 5.58844 5.71712 5.73456 5.77276 5.84450 5.96473 6.02785 6.08358 6.14504 6.27177 6.38198 6.57109 6.59434 6.81695 6.86044 6.90882 7.63819 7.79319 8.34619 8.44551 9.46053 10.00653 10.35343 11.39542 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039753 B = 0.003118 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.179529 B = 8978.100122 C = 9298.344119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.067 3.933 3 H 0.088 0.912 4 C -0.138 4.138 5 C -0.131 4.131 6 C 0.046 3.954 7 N -0.508 5.508 8 C 0.034 3.966 9 C 0.523 3.477 10 O -0.528 6.528 11 N -0.616 5.616 12 C 0.098 3.902 13 C -0.154 4.154 14 C 0.171 3.829 15 H 0.063 0.937 16 N -0.716 5.716 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.103 3.897 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.065 0.935 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 12.223 19.859 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.040 4.040 3 H 0.106 0.894 4 C -0.177 4.177 5 C -0.169 4.169 6 C -0.082 4.082 7 N -0.232 5.232 8 C -0.097 4.097 9 C 0.311 3.689 10 O -0.404 6.404 11 N -0.352 5.352 12 C -0.025 4.025 13 C -0.195 4.195 14 C 0.060 3.940 15 H 0.081 0.919 16 N -0.357 5.357 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.020 4.020 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.228 12.551 19.346 23.061 hybrid contribution -1.099 -1.074 -0.265 1.559 sum -1.327 11.477 19.080 22.306 Atomic orbital electron populations 1.22425 0.95894 1.02256 1.02512 1.22497 0.93794 0.99043 0.88712 0.89405 1.22873 0.97848 0.99405 0.97549 1.22722 0.98088 1.00336 0.95731 1.23118 0.98526 0.91121 0.95403 1.63415 1.20359 1.23824 1.15603 1.22258 0.94161 1.01042 0.92204 1.20171 0.86236 0.77672 0.84861 1.90683 1.14935 1.54114 1.80652 1.48503 1.07448 1.64159 1.15069 1.22387 0.80095 0.99822 1.00206 1.23550 1.01143 0.97881 0.96950 1.21179 0.90870 0.91035 0.90938 0.91865 1.42360 1.35027 1.22147 1.36143 1.19167 1.06958 1.04711 1.06799 0.91009 1.24777 0.98473 0.97564 0.99848 1.69656 1.31026 1.14521 1.42584 0.86242 0.80108 0.77461 0.82183 1.21156 1.21661 1.21202 1.22243 0.98658 0.99250 0.81844 0.92232 0.91892 0.91704 0.90767 0.91380 0.90563 0.90869 0.93992 0.88999 0.87646 0.91857 0.91636 0.91671 0.90681 0.90579 0.77955 0.93290 0.91704 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 7.81 37.16 0.29 -0.95 16 2 C 0.07 0.60 4.02 -66.72 -0.27 0.33 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.14 -1.06 6.47 -24.91 -0.16 -1.22 16 5 C -0.13 -1.16 7.08 -24.59 -0.17 -1.33 16 6 C 0.05 0.54 5.80 -2.30 -0.01 0.53 16 7 N -0.51 -6.10 4.84 -224.78 -1.09 -7.19 16 8 C 0.03 0.41 3.17 -4.98 -0.02 0.39 16 9 C 0.52 8.34 7.66 -10.99 -0.08 8.26 16 10 O -0.53 -10.40 15.48 5.55 0.09 -10.32 16 11 N -0.62 -9.63 3.33 -170.52 -0.57 -10.19 16 12 C 0.10 1.26 6.69 -2.53 -0.02 1.24 16 13 C -0.15 -2.47 6.77 -24.59 -0.17 -2.64 16 14 C 0.17 3.28 3.58 -66.09 -0.24 3.05 16 15 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 16 N -0.72 -17.51 5.25 -51.65 -0.27 -17.78 16 17 C -0.25 -6.60 9.98 -15.06 -0.15 -6.75 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 21 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 C 0.10 1.87 6.63 -3.06 -0.02 1.85 16 26 H 0.06 0.44 6.66 -51.93 -0.35 0.09 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 7.85 -51.93 -0.41 0.09 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.50 7.60 -51.93 -0.39 0.10 16 34 H 0.09 1.30 7.45 -51.93 -0.39 0.92 16 35 H 0.11 1.05 6.10 -51.93 -0.32 0.74 16 36 H 0.06 0.67 6.45 -51.93 -0.34 0.33 16 37 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.39 10.19 7.51 -40.82 -0.31 9.88 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -31.67 343.01 -9.48 -41.15 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.40 Total: 6.93 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.11 Total: 2.37 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -1.20 Total: -62.20 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.67 -9.48 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019380820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.484 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds