Wall clock time and date at job start Tue Mar 31 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.64461 * 2 1 4 4 C 1.54602 * 110.72315 * 123.14960 * 2 1 3 5 5 C 1.53991 * 105.13971 * 140.49866 * 4 2 1 6 6 N 1.47900 * 107.05677 * 1.22120 * 5 4 2 7 7 C 1.46906 * 110.99902 * 214.15626 * 6 5 4 8 8 C 1.50702 * 109.46854 * 176.64888 * 7 6 5 9 9 O 1.21278 * 120.00284 * 6.14615 * 8 7 6 10 10 N 1.34784 * 119.99721 * 186.15010 * 8 7 6 11 11 C 1.47023 * 125.64896 * 359.68530 * 10 8 7 12 12 C 1.54329 * 107.26453 * 178.85281 * 11 10 8 13 13 C 1.55157 * 103.02245 * 338.14416 * 12 11 10 14 14 H 1.08996 * 111.00484 * 277.23041 * 13 12 11 15 15 N 1.46502 * 111.03725 * 153.39234 * 13 12 11 16 16 C 1.36939 * 119.99499 * 92.78208 * 15 13 12 17 17 H 1.07997 * 120.00419 * 0.02562 * 16 15 13 18 18 C 1.38821 * 119.99624 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99637 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99849 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46918 * 90.00572 * 20 18 16 22 22 H 1.48500 * 109.47311 * 210.00035 * 20 18 16 23 23 H 1.48498 * 109.47631 * 330.00048 * 20 18 16 24 24 C 1.47418 * 125.64645 * 180.02562 * 10 8 7 25 25 C 1.48536 * 105.82481 * 334.67239 * 6 5 4 26 26 H 1.08998 * 109.47443 * 298.30115 * 1 2 3 27 27 H 1.08997 * 109.47126 * 58.30501 * 1 2 3 28 28 H 1.09002 * 109.47277 * 178.30337 * 1 2 3 29 29 H 1.08992 * 110.30812 * 21.57909 * 4 2 1 30 30 H 1.09006 * 110.38970 * 259.45499 * 4 2 1 31 31 H 1.08994 * 109.91994 * 120.58081 * 5 4 2 32 32 H 1.09001 * 109.91336 * 241.87460 * 5 4 2 33 33 H 1.08997 * 109.47380 * 296.64865 * 7 6 5 34 34 H 1.09002 * 109.46993 * 56.64867 * 7 6 5 35 35 H 1.08997 * 109.88388 * 298.40558 * 11 10 8 36 36 H 1.08999 * 109.87705 * 59.56525 * 11 10 8 37 37 H 1.08999 * 110.85094 * 219.67118 * 12 11 10 38 38 H 1.09003 * 110.66482 * 96.52568 * 12 11 10 39 39 H 0.96999 * 120.00179 * 272.78615 * 15 13 12 40 40 H 0.96999 * 119.99687 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.37212 * 322.92377 * 24 10 8 42 42 H 1.09000 * 110.36826 * 85.14064 * 24 10 8 43 43 H 1.09004 * 110.66472 * 280.77383 * 25 6 5 44 44 H 1.08995 * 110.81278 * 157.70725 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0770 -0.7907 1.2107 5 6 3.2921 -1.5661 0.6687 6 7 3.4359 -1.2050 -0.7583 7 6 3.9294 -2.3449 -1.5426 8 6 3.9848 -1.9654 -3.0000 9 8 3.7541 -0.8239 -3.3386 10 7 4.2907 -2.8946 -3.9272 11 6 4.5973 -4.3068 -3.6563 12 6 4.8553 -4.9885 -5.0166 13 6 4.1333 -4.0509 -6.0201 14 1 3.0679 -4.2758 -6.0678 15 7 4.7444 -4.1325 -7.3491 16 6 4.2505 -5.0102 -8.2770 17 1 3.4103 -5.6420 -8.0292 18 6 4.8298 -5.0880 -9.5361 19 7 4.3548 -5.9312 -10.4280 20 14 6.2825 -3.9948 -9.9649 21 1 7.5464 -4.6908 -9.6134 22 1 6.2679 -3.7004 -11.4203 23 1 6.1883 -2.7243 -9.2019 24 6 4.3801 -2.6617 -5.3801 25 6 2.0821 -0.7939 -1.2105 26 1 -0.3634 0.4872 0.9048 27 1 -0.3633 0.5399 -0.8744 28 1 -0.3634 -1.0272 -0.0304 29 1 1.3218 -1.4829 1.5829 30 1 2.3863 -0.1077 2.0019 31 1 4.1898 -1.2798 1.2166 32 1 3.1213 -2.6383 0.7650 33 1 4.9277 -2.6169 -1.1998 34 1 3.2572 -3.1931 -1.4133 35 1 5.4854 -4.3795 -3.0285 36 1 3.7505 -4.7814 -3.1606 37 1 4.4187 -5.9870 -5.0392 38 1 5.9236 -5.0314 -5.2289 39 1 5.4988 -3.5649 -7.5718 40 1 4.7598 -5.9858 -11.3077 41 1 3.6133 -1.9557 -5.6991 42 1 5.3702 -2.2906 -5.6446 43 1 1.4623 -1.6675 -1.4127 44 1 2.1453 -0.1563 -2.0922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019383162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:05 Heat of formation + Delta-G solvation = -10.106004 kcal Electronic energy + Delta-G solvation = -22334.940040 eV Core-core repulsion = 19094.553263 eV Total energy + Delta-G solvation = -3240.386777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23443 -38.90750 -37.23474 -34.30753 -33.61925 -31.69041 -30.17875 -29.85279 -28.55805 -27.16367 -25.31738 -23.35112 -22.64526 -21.34939 -20.39669 -20.26602 -19.07524 -17.80214 -17.16966 -16.32596 -16.08984 -15.75041 -15.18436 -14.55342 -14.39253 -14.01481 -13.85498 -13.51957 -13.37184 -13.16389 -12.91409 -12.69476 -12.50176 -12.33562 -12.20574 -12.02756 -11.87269 -11.54170 -11.43178 -11.15268 -10.93137 -10.87369 -10.77128 -10.75530 -10.50389 -10.11369 -9.69451 -9.62976 -9.02449 -8.63102 -8.47819 -7.39615 -5.85403 -3.23201 2.69909 2.93443 3.33644 3.36953 3.42072 3.81866 4.32197 4.40101 4.52181 4.56002 4.68842 4.87730 4.93545 5.00085 5.09888 5.17115 5.19266 5.25520 5.25850 5.37540 5.42597 5.45039 5.50350 5.53035 5.61773 5.65908 5.73650 5.83023 5.84181 5.85746 6.05628 6.07890 6.12275 6.22778 6.41487 6.48832 6.66406 6.71255 6.74430 7.63948 7.88345 8.27515 8.32997 9.09530 9.81913 10.00027 11.32286 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035916 B = 0.003113 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.404168 B = 8992.856310 C = 9120.036643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.083 0.917 4 C -0.127 4.127 5 C 0.035 3.965 6 N -0.501 5.501 7 C 0.034 3.966 8 C 0.526 3.474 9 O -0.528 6.528 10 N -0.616 5.616 11 C 0.100 3.900 12 C -0.155 4.155 13 C 0.177 3.823 14 H 0.075 0.925 15 N -0.738 5.738 16 C -0.251 4.251 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.930 5.930 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.096 3.904 25 C 0.038 3.962 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 6.939 24.227 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.165 4.165 5 C -0.093 4.093 6 N -0.225 5.225 7 C -0.098 4.098 8 C 0.314 3.686 9 O -0.404 6.404 10 N -0.351 5.351 11 C -0.023 4.023 12 C -0.196 4.196 13 C 0.066 3.934 14 H 0.093 0.907 15 N -0.379 5.379 16 C -0.380 4.380 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.577 5.577 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.027 4.027 25 C -0.090 4.090 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.114 7.841 23.865 25.312 hybrid contribution 0.662 -0.232 -0.307 0.766 sum -2.452 7.609 23.558 24.878 Atomic orbital electron populations 1.21764 0.94545 1.01823 1.01917 1.22078 0.95352 0.99991 0.94220 0.89866 1.22484 0.96883 0.99016 0.98118 1.22903 0.98977 0.98167 0.89248 1.64580 1.24716 1.31727 1.01519 1.22152 1.02730 0.93265 0.91608 1.20044 0.77087 0.84590 0.86882 1.90674 1.48964 1.19135 1.81639 1.48458 1.68930 1.10106 1.07614 1.22114 0.99851 0.81014 0.99320 1.23383 1.02617 1.00407 0.93203 1.21261 0.96946 0.90319 0.84901 0.90721 1.42614 1.37922 1.47227 1.10150 1.19043 1.13382 1.13671 0.91912 0.89007 1.24677 0.99120 0.98848 0.96114 1.69695 1.43196 1.38938 1.05851 0.86565 0.83510 0.80841 0.77719 1.20958 1.21591 1.20163 1.22586 1.01871 0.99608 0.78634 1.23459 0.87530 0.98955 0.99032 0.92481 0.92281 0.92758 0.91413 0.91013 0.90175 0.93715 0.87820 0.92016 0.91905 0.91836 0.90205 0.90668 0.80290 0.92886 0.90391 0.91710 0.94207 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.16 37.15 0.34 -0.75 16 2 C -0.10 -0.88 3.65 -88.76 -0.32 -1.21 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -0.97 6.51 -25.37 -0.17 -1.14 16 5 C 0.03 0.30 6.70 -2.76 -0.02 0.28 16 6 N -0.50 -5.81 5.11 -231.89 -1.18 -7.00 16 7 C 0.03 0.38 4.51 -4.97 -0.02 0.35 16 8 C 0.53 7.80 7.48 -10.98 -0.08 7.72 16 9 O -0.53 -9.66 14.56 5.56 0.08 -9.58 16 10 N -0.62 -8.93 3.33 -170.51 -0.57 -9.49 16 11 C 0.10 1.20 6.48 -3.06 -0.02 1.18 16 12 C -0.16 -2.32 6.64 -24.89 -0.17 -2.48 16 13 C 0.18 3.22 3.72 -65.77 -0.24 2.98 16 14 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 15 N -0.74 -16.67 5.05 -51.34 -0.26 -16.93 16 16 C -0.25 -6.79 10.44 -15.05 -0.16 -6.95 16 17 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 20 Si 0.88 21.61 27.73 -169.99 -4.71 16.89 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 24 C 0.10 1.61 6.55 -2.52 -0.02 1.60 16 25 C 0.04 0.44 5.03 -1.90 -0.01 0.43 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 29 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.34 7.68 -51.93 -0.40 -0.06 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.36 8.15 5.63 -40.82 -0.23 7.92 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 42 H 0.06 1.10 8.01 -51.93 -0.42 0.69 16 43 H 0.04 0.45 7.91 -51.93 -0.41 0.04 16 44 H 0.10 1.46 6.44 -51.93 -0.33 1.12 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -31.91 346.37 -9.32 -41.23 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.69 Total: 5.27 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.98 Total: 2.17 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -1.24 Total: -61.19 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.91 -9.32 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019383162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.119 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds