Wall clock time and date at job start Tue Mar 31 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47908 * 110.99964 * 2 1 4 4 C 1.53988 * 107.05885 * 214.15792 * 3 2 1 5 5 C 1.54594 * 105.14115 * 1.22535 * 4 3 2 6 6 H 1.08997 * 110.72332 * 263.60030 * 5 4 3 7 7 C 1.53003 * 110.72284 * 140.49295 * 5 4 3 8 8 C 1.50696 * 109.47035 * 174.99872 * 7 5 4 9 9 O 1.21283 * 120.00274 * 0.02562 * 8 7 5 10 10 N 1.34779 * 120.00356 * 179.97438 * 8 7 5 11 11 C 1.47425 * 125.64283 * 0.03037 * 10 8 7 12 12 C 1.54912 * 104.83110 * 204.09144 * 11 10 8 13 13 C 1.55161 * 101.58023 * 322.98692 * 12 11 10 14 14 H 1.09000 * 110.72352 * 277.14276 * 13 12 11 15 15 N 1.46500 * 110.71911 * 154.03934 * 13 12 11 16 16 C 1.36938 * 119.99518 * 86.46074 * 15 13 12 17 17 H 1.07999 * 120.00203 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99850 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00252 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00102 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47433 * 59.99412 * 20 18 16 22 22 H 1.48498 * 109.47259 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46999 * 299.99688 * 20 18 16 24 24 C 1.47014 * 125.65118 * 179.71958 * 10 8 7 25 25 C 1.48536 * 111.00155 * 242.60915 * 2 1 3 26 26 H 1.09002 * 109.47401 * 59.87093 * 1 2 3 27 27 H 1.09001 * 109.46874 * 299.87106 * 1 2 3 28 28 H 1.09004 * 109.46970 * 179.87239 * 1 2 3 29 29 H 1.09004 * 109.91565 * 333.51266 * 3 2 1 30 30 H 1.09003 * 109.91300 * 94.80421 * 3 2 1 31 31 H 1.09002 * 110.30768 * 120.14749 * 4 3 2 32 32 H 1.09005 * 110.30960 * 242.30842 * 4 3 2 33 33 H 1.08995 * 109.47129 * 294.99788 * 7 5 4 34 34 H 1.09005 * 109.47067 * 55.00304 * 7 5 4 35 35 H 1.09006 * 110.36764 * 322.92273 * 11 10 8 36 36 H 1.08993 * 110.36908 * 85.25397 * 11 10 8 37 37 H 1.09006 * 111.00630 * 81.06162 * 12 11 10 38 38 H 1.09001 * 111.00417 * 204.91551 * 12 11 10 39 39 H 0.96998 * 120.00623 * 266.45295 * 15 13 12 40 40 H 0.96997 * 120.00534 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.88428 * 298.39131 * 24 10 8 42 42 H 1.08999 * 109.88481 * 59.56024 * 24 10 8 43 43 H 1.08999 * 110.66325 * 278.15710 * 25 2 1 44 44 H 1.09003 * 110.66275 * 41.27782 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2982 1.3660 -0.8266 5 6 3.4491 -0.0928 -1.3155 6 1 4.1115 -0.6539 -0.6563 7 6 3.9630 -0.1306 -2.7561 8 6 4.2162 -1.5596 -3.1618 9 8 4.0059 -2.4594 -2.3762 10 7 4.6754 -1.8380 -4.3980 11 6 4.9719 -0.8464 -5.4478 12 6 4.8529 -1.6303 -6.7787 13 6 5.4399 -3.0104 -6.3808 14 1 6.5286 -2.9958 -6.4323 15 7 4.8965 -4.0701 -7.2340 16 6 5.4931 -4.3573 -8.4327 17 1 6.3638 -3.8023 -8.7493 18 6 4.9780 -5.3611 -9.2414 19 7 3.9165 -6.0371 -8.8559 20 14 5.7912 -5.7524 -10.8769 21 1 7.1982 -6.1661 -10.6438 22 1 5.0553 -6.8562 -11.5442 23 1 5.7670 -4.5462 -11.7429 24 6 4.9696 -3.1803 -4.9206 25 6 2.0014 -0.6380 -1.2312 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 0.5118 0.8912 28 1 -0.3633 -1.0277 -0.0023 29 1 1.2758 2.0562 -0.4571 30 1 2.2122 1.6967 1.0213 31 1 3.2135 2.0431 -1.6766 32 1 4.1470 1.6456 -0.2024 33 1 3.2179 0.3088 -3.4193 34 1 4.8911 0.4368 -2.8258 35 1 4.2448 -0.0348 -5.4194 36 1 5.9823 -0.4561 -5.3265 37 1 3.8112 -1.7226 -7.0860 38 1 5.4498 -1.1630 -7.5620 39 1 4.1144 -4.5684 -6.9498 40 1 3.5568 -6.7388 -9.4208 41 1 5.7572 -3.6447 -4.3273 42 1 4.0698 -3.7947 -4.8920 43 1 2.0041 -1.7234 -1.1316 44 1 1.4236 -0.3321 -2.1035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019652797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:36 Heat of formation + Delta-G solvation = -18.295469 kcal Electronic energy + Delta-G solvation = -22207.823594 eV Core-core repulsion = 18967.081695 eV Total energy + Delta-G solvation = -3240.741899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11131 -38.90110 -37.22418 -34.14069 -33.52523 -31.56209 -30.14588 -29.53084 -28.23251 -27.01748 -25.13109 -23.55985 -22.72582 -21.27875 -20.54928 -19.99614 -18.98005 -17.40640 -17.01922 -16.23099 -15.99045 -15.59936 -15.03484 -14.73810 -14.40232 -14.09681 -13.82039 -13.53092 -13.34087 -13.24834 -12.71471 -12.45879 -12.42621 -12.30656 -11.82932 -11.69376 -11.60899 -11.52147 -11.40228 -11.18629 -10.95889 -10.85100 -10.72462 -10.69170 -10.36455 -10.12460 -9.78439 -9.59470 -8.98398 -8.63528 -8.39713 -7.06649 -5.83829 -3.14745 2.79822 3.14629 3.39829 3.44564 3.45723 3.83826 4.35160 4.43553 4.52731 4.63239 4.77112 4.94217 5.01893 5.12663 5.17460 5.20377 5.27277 5.28621 5.41278 5.42377 5.47580 5.52282 5.55173 5.59208 5.64154 5.67734 5.76812 5.77703 5.94520 6.06401 6.12506 6.17073 6.24491 6.36014 6.56349 6.58666 6.68088 6.82210 6.88566 7.62582 7.74610 8.32837 8.35328 9.44823 9.99268 10.33886 11.38318 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037104 B = 0.002945 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.458843 B = 9505.661053 C = 9838.712111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.035 3.965 4 C -0.129 4.129 5 C -0.075 4.075 6 H 0.093 0.907 7 C -0.127 4.127 8 C 0.523 3.477 9 O -0.542 6.542 10 N -0.614 5.614 11 C 0.098 3.902 12 C -0.155 4.155 13 C 0.171 3.829 14 H 0.063 0.937 15 N -0.716 5.716 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.101 3.899 25 C 0.042 3.958 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 17.629 14.195 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.094 4.094 6 H 0.111 0.889 7 C -0.168 4.168 8 C 0.311 3.689 9 O -0.420 6.420 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.196 4.196 13 C 0.060 3.940 14 H 0.081 0.919 15 N -0.357 5.357 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.022 4.022 25 C -0.085 4.085 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.016 16.818 15.001 22.626 hybrid contribution -0.211 0.141 -1.721 1.740 sum -2.226 16.959 13.280 21.655 Atomic orbital electron populations 1.22509 0.87964 1.02336 1.00460 1.64744 1.08020 1.14597 1.37447 1.22872 0.95783 0.90172 1.00510 1.22498 0.97840 0.96704 0.99625 1.21818 0.97151 0.95568 0.94866 0.88864 1.21689 1.03230 0.94375 0.97474 1.20270 0.76960 0.91344 0.80319 1.90699 1.52162 1.48389 1.50704 1.48532 1.64674 1.09146 1.12500 1.22396 1.00080 0.91855 0.88170 1.23561 1.02948 0.98529 0.94559 1.21177 0.96778 0.88576 0.87495 0.91917 1.42350 1.34582 1.39092 1.19641 1.19161 1.09179 1.14555 0.94777 0.91013 1.24780 0.98053 0.98716 0.99101 1.69653 1.24183 1.25529 1.38401 0.86241 0.78561 0.77606 0.83577 1.21157 1.21650 1.21188 1.22265 1.00925 0.83430 0.95607 1.23346 0.93826 1.01116 0.90251 0.95508 0.91479 0.91141 0.93898 0.90459 0.91277 0.90750 0.89137 0.88747 0.91410 0.91647 0.90665 0.90567 0.77952 0.93274 0.91689 0.91190 0.88765 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.40 60.07 0.56 0.71 16 2 N -0.52 -5.71 5.55 -238.71 -1.33 -7.04 16 3 C 0.03 0.30 6.70 -2.75 -0.02 0.28 16 4 C -0.13 -1.04 6.51 -25.38 -0.17 -1.21 16 5 C -0.07 -0.79 2.61 -88.76 -0.23 -1.03 16 6 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 7 C -0.13 -1.31 4.09 -27.88 -0.11 -1.43 16 8 C 0.52 7.75 7.68 -10.99 -0.08 7.66 16 9 O -0.54 -9.97 15.17 5.56 0.08 -9.89 16 10 N -0.61 -9.24 3.33 -170.52 -0.57 -9.81 16 11 C 0.10 1.22 6.69 -2.53 -0.02 1.20 16 12 C -0.15 -2.45 6.77 -24.58 -0.17 -2.62 16 13 C 0.17 3.24 3.57 -66.08 -0.24 3.01 16 14 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 15 N -0.72 -17.39 5.25 -51.64 -0.27 -17.66 16 16 C -0.25 -6.58 9.98 -15.06 -0.15 -6.73 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.10 1.79 6.63 -3.06 -0.02 1.77 16 25 C 0.04 0.50 5.47 -1.90 -0.01 0.49 16 26 H 0.03 0.23 8.00 -51.93 -0.42 -0.19 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.34 7.73 -51.93 -0.40 -0.06 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.82 7.71 -51.93 -0.40 0.42 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.39 10.12 7.53 -40.82 -0.31 9.82 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 43 H 0.09 1.35 7.41 -51.93 -0.38 0.96 16 44 H 0.04 0.47 7.78 -51.93 -0.40 0.07 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -31.25 349.44 -9.55 -40.80 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.69 Total: 6.70 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.75 Total: 1.74 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -1.44 Total: -61.45 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.25 -9.55 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019652797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.508 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds