Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47895 * 110.99919 * 2 1 4 4 C 1.53988 * 107.05877 * 145.84819 * 3 2 1 5 5 C 1.54597 * 105.13882 * 358.77406 * 4 3 2 6 6 H 1.09001 * 110.72198 * 96.58121 * 5 4 3 7 7 C 1.53003 * 110.72390 * 219.68485 * 5 4 3 8 8 C 1.50696 * 109.46997 * 185.00021 * 7 5 4 9 9 O 1.21281 * 120.00432 * 0.02562 * 8 7 5 10 10 N 1.34780 * 120.00081 * 180.02562 * 8 7 5 11 11 C 1.47024 * 125.64800 * 0.02562 * 10 8 7 12 12 C 1.54316 * 107.27152 * 178.90196 * 11 10 8 13 13 C 1.55158 * 102.94576 * 337.80696 * 12 11 10 14 14 H 1.09000 * 111.00500 * 277.39717 * 13 12 11 15 15 N 1.46499 * 111.00663 * 153.57575 * 13 12 11 16 16 C 1.36939 * 119.99933 * 89.85946 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.47467 * 125.62963 * 179.97438 * 10 8 7 25 25 C 1.48526 * 111.00178 * 117.40069 * 2 1 3 26 26 H 1.09000 * 109.47161 * 59.87499 * 1 2 3 27 27 H 1.09004 * 109.47029 * 179.87026 * 1 2 3 28 28 H 1.08994 * 109.46749 * 299.87061 * 1 2 3 29 29 H 1.09002 * 109.91848 * 26.49178 * 3 2 1 30 30 H 1.09002 * 110.08416 * 265.29356 * 3 2 1 31 31 H 1.09006 * 110.31329 * 239.86037 * 4 3 2 32 32 H 1.09001 * 110.31331 * 117.69202 * 4 3 2 33 33 H 1.09001 * 109.46710 * 65.00243 * 7 5 4 34 34 H 1.09000 * 109.47586 * 305.00378 * 7 5 4 35 35 H 1.09000 * 109.87988 * 59.48526 * 11 10 8 36 36 H 1.09000 * 109.88307 * 298.31930 * 11 10 8 37 37 H 1.09001 * 110.72077 * 219.44728 * 12 11 10 38 38 H 1.08994 * 110.72447 * 96.16979 * 12 11 10 39 39 H 0.97001 * 119.99790 * 269.57919 * 15 13 12 40 40 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.35223 * 85.32702 * 24 10 8 42 42 H 1.09007 * 110.40436 * 322.98576 * 24 10 8 43 43 H 1.09004 * 110.67044 * 81.84464 * 25 2 1 44 44 H 1.08999 * 110.67048 * 318.71147 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2983 1.3659 0.8264 5 6 3.4492 -0.0930 1.3152 6 1 4.1140 -0.6532 0.6578 7 6 3.9590 -0.1308 2.7574 8 6 4.2124 -1.5598 3.1632 9 8 4.0061 -2.4594 2.3764 10 7 4.6683 -1.8382 4.4006 11 6 4.9591 -0.8495 5.4492 12 6 5.4275 -1.6285 6.6963 13 6 4.8347 -3.0436 6.4650 14 1 3.7921 -3.0868 6.7800 15 7 5.6304 -4.0648 7.1509 16 6 5.3296 -4.4156 8.4400 17 1 4.5086 -3.9363 8.9524 18 6 6.0798 -5.3873 9.0879 19 7 7.0806 -5.9711 8.4634 20 14 5.6699 -5.8653 10.8465 21 1 4.2803 -6.3854 10.9071 22 1 6.6128 -6.9163 11.3064 23 1 5.7911 -4.6737 11.7245 24 6 4.9570 -3.1851 4.9269 25 6 2.0013 -0.6381 1.2310 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3633 -1.0277 -0.0023 28 1 -0.3632 0.5118 0.8911 29 1 1.2758 2.0561 0.4571 30 1 2.2116 1.7001 -1.0203 31 1 3.2137 2.0429 1.6766 32 1 4.1470 1.6455 0.2022 33 1 3.2115 0.3076 3.4185 34 1 4.8863 0.4375 2.8300 35 1 4.0585 -0.2818 5.6834 36 1 5.7480 -0.1758 5.1150 37 1 5.0204 -1.1837 7.6043 38 1 6.5158 -1.6687 6.7397 39 1 6.3677 -4.4953 6.6905 40 1 7.6050 -6.6498 8.9163 41 1 5.9668 -3.4908 4.6529 42 1 4.2276 -3.9037 4.5529 43 1 2.0042 -1.7236 1.1314 44 1 1.4239 -0.3324 2.1034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019652798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -19.018690 kcal Electronic energy + Delta-G solvation = -22162.369262 eV Core-core repulsion = 18921.596003 eV Total energy + Delta-G solvation = -3240.773260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12196 -38.91327 -37.22511 -34.15403 -33.54062 -31.57458 -30.15992 -29.55435 -28.22718 -27.02811 -25.14815 -23.56657 -22.71256 -21.29878 -20.52029 -20.07044 -18.94761 -17.39578 -17.03447 -16.31554 -15.92863 -15.63970 -15.02909 -14.77354 -14.44567 -14.09371 -13.81115 -13.56619 -13.27541 -13.18610 -12.78070 -12.63796 -12.41295 -12.19433 -11.93692 -11.67412 -11.62224 -11.56476 -11.41968 -11.19465 -10.96535 -10.85760 -10.73495 -10.69485 -10.33320 -10.10781 -9.80066 -9.60764 -8.98324 -8.65456 -8.40898 -7.07745 -5.84656 -3.15487 2.78171 3.13454 3.39683 3.44534 3.45503 3.81716 4.34273 4.42120 4.52570 4.62384 4.76483 4.92548 5.02734 5.11077 5.15240 5.17842 5.26152 5.32075 5.34294 5.40970 5.45698 5.52790 5.57144 5.58693 5.62182 5.67264 5.75161 5.76227 5.95826 6.04418 6.12278 6.15708 6.23221 6.35751 6.53331 6.59718 6.66151 6.80222 6.87978 7.62204 7.73972 8.31787 8.33957 9.44242 9.98215 10.33111 11.37471 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039874 B = 0.002851 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.036037 B = 9819.209113 C = 9967.956149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.035 3.965 4 C -0.129 4.129 5 C -0.075 4.075 6 H 0.093 0.907 7 C -0.128 4.128 8 C 0.523 3.477 9 O -0.542 6.542 10 N -0.615 5.615 11 C 0.102 3.898 12 C -0.156 4.156 13 C 0.172 3.828 14 H 0.064 0.936 15 N -0.714 5.714 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.098 3.902 25 C 0.042 3.958 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 17.387 -13.370 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.094 4.094 6 H 0.112 0.888 7 C -0.168 4.168 8 C 0.312 3.688 9 O -0.420 6.420 10 N -0.349 5.349 11 C -0.022 4.022 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.082 0.918 15 N -0.355 5.355 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.025 4.025 25 C -0.085 4.085 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.715 16.579 -14.155 23.477 hybrid contribution -0.185 0.165 1.706 1.723 sum -8.900 16.744 -12.450 22.684 Atomic orbital electron populations 1.22506 0.87982 1.02313 1.00448 1.64724 1.07992 1.14627 1.37464 1.22860 0.95782 0.90128 1.00541 1.22499 0.97844 0.96707 0.99633 1.21826 0.97134 0.95582 0.94876 0.88826 1.21693 1.03266 0.94384 0.97454 1.20260 0.76865 0.91341 0.80343 1.90698 1.52355 1.48396 1.50544 1.48523 1.64792 1.09272 1.12336 1.22089 0.99632 0.91768 0.88687 1.23420 1.02188 0.98906 0.95188 1.21300 0.95562 0.88443 0.88737 0.91807 1.42257 1.36399 1.43689 1.13116 1.19169 1.12379 1.16971 0.89181 0.91040 1.24778 0.98110 0.99117 0.98618 1.69656 1.21474 1.29572 1.37060 0.86238 0.77450 0.77885 0.84399 1.21160 1.21628 1.21178 1.22568 1.01215 0.83392 0.95338 1.23343 0.93839 1.01092 0.90223 0.91477 0.91163 0.95531 0.93933 0.90453 0.91271 0.90730 0.89152 0.88740 0.91997 0.92061 0.90744 0.90560 0.77922 0.93268 0.91424 0.90609 0.88781 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.40 60.07 0.56 0.71 16 2 N -0.52 -5.56 5.55 -238.73 -1.33 -6.89 16 3 C 0.03 0.30 6.70 -2.76 -0.02 0.28 16 4 C -0.13 -1.03 6.51 -25.38 -0.17 -1.20 16 5 C -0.07 -0.78 2.62 -88.76 -0.23 -1.02 16 6 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 7 C -0.13 -1.30 4.27 -27.88 -0.12 -1.42 16 8 C 0.52 7.66 7.68 -10.99 -0.08 7.57 16 9 O -0.54 -9.84 15.10 5.56 0.08 -9.75 16 10 N -0.61 -9.18 3.33 -170.47 -0.57 -9.75 16 11 C 0.10 1.27 6.49 -3.07 -0.02 1.25 16 12 C -0.16 -2.45 6.65 -24.90 -0.17 -2.62 16 13 C 0.17 3.26 3.70 -65.76 -0.24 3.02 16 14 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 15 N -0.71 -17.26 5.26 -51.33 -0.27 -17.53 16 16 C -0.25 -6.59 9.97 -15.06 -0.15 -6.74 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.10 1.73 6.54 -2.49 -0.02 1.71 16 25 C 0.04 0.49 5.46 -1.90 -0.01 0.48 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.22 8.00 -51.93 -0.42 -0.20 16 29 H 0.04 0.33 7.73 -51.93 -0.40 -0.07 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.79 7.99 -51.93 -0.42 0.37 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.39 9.98 7.73 -40.82 -0.32 9.67 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 42 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 43 H 0.09 1.30 7.41 -51.93 -0.38 0.92 16 44 H 0.04 0.45 7.76 -51.93 -0.40 0.04 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -30.97 350.58 -9.61 -40.58 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.76 Total: 6.35 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.76 Total: 1.67 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -1.44 Total: -60.95 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.97 -9.61 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019652798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.564 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds