Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.05995 * 2 1 4 4 C 1.53991 * 109.91808 * 238.79301 * 2 1 3 5 5 H 1.09002 * 110.30763 * 120.40651 * 4 2 1 6 6 C 1.50702 * 110.31055 * 358.33657 * 4 2 1 7 7 O 1.21274 * 120.00125 * 275.61582 * 6 4 2 8 8 N 1.34777 * 119.99735 * 95.61461 * 6 4 2 9 9 C 1.46501 * 119.99782 * 179.97438 * 8 6 4 10 10 H 1.09003 * 112.84903 * 336.20068 * 9 8 6 11 11 C 1.53782 * 113.68906 * 107.46416 * 9 8 6 12 12 C 1.53783 * 87.08196 * 139.99225 * 11 9 8 13 13 H 1.08995 * 113.69153 * 220.00638 * 12 11 9 14 14 N 1.46501 * 113.61291 * 89.11374 * 12 11 9 15 15 C 1.36936 * 119.99611 * 107.50256 * 14 12 11 16 16 H 1.07996 * 120.00324 * 0.02562 * 15 14 12 17 17 C 1.38816 * 119.99758 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99898 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99930 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47024 * 90.00126 * 19 17 15 21 21 H 1.48498 * 109.47282 * 209.99617 * 19 17 15 22 22 H 1.48493 * 109.47545 * 330.00099 * 19 17 15 23 23 C 1.53782 * 113.61414 * 204.99850 * 9 8 6 24 24 C 1.54590 * 105.22490 * 239.37040 * 4 2 1 25 25 C 1.54940 * 102.92422 * 338.09548 * 24 4 2 26 26 N 1.48127 * 109.95008 * 121.31861 * 2 1 3 27 27 C 1.46894 * 110.95334 * 265.20507 * 26 2 1 28 28 H 1.08999 * 109.47030 * 183.75365 * 1 2 3 29 29 H 1.08997 * 109.47387 * 303.75216 * 1 2 3 30 30 H 1.09006 * 109.46891 * 63.75708 * 1 2 3 31 31 H 0.96998 * 120.00199 * 359.97438 * 8 6 4 32 32 H 1.09002 * 113.61510 * 25.44225 * 11 9 8 33 33 H 1.08998 * 113.61724 * 254.54206 * 11 9 8 34 34 H 0.96998 * 120.00415 * 287.77897 * 14 12 11 35 35 H 0.96998 * 119.99934 * 179.97438 * 18 17 15 36 36 H 1.08998 * 113.61123 * 105.38716 * 23 9 8 37 37 H 1.08994 * 113.69069 * 334.49661 * 23 9 8 38 38 H 1.09000 * 110.72694 * 96.44986 * 24 4 2 39 39 H 1.09003 * 110.72549 * 219.73377 * 24 4 2 40 40 H 1.08995 * 110.66694 * 155.84983 * 25 24 4 41 41 H 1.09007 * 110.66536 * 278.81257 * 25 24 4 42 42 H 1.08998 * 109.47377 * 302.50477 * 27 26 2 43 43 H 1.09005 * 109.47116 * 62.50525 * 27 26 2 44 44 H 1.08998 * 109.47413 * 182.50141 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 2.6700 -0.0890 -1.8486 6 6 0.9046 -1.2894 -2.0493 7 8 0.4041 -2.3549 -1.7578 8 7 0.4325 -0.5876 -3.0986 9 6 -0.6851 -1.1121 -3.8873 10 1 -0.7793 -2.1959 -3.8194 11 6 -2.0085 -0.3632 -3.6578 12 6 -2.2519 -0.4902 -5.1709 13 1 -2.6862 0.4023 -5.6211 14 7 -2.9541 -1.7184 -5.5513 15 6 -4.2608 -1.6624 -5.9567 16 1 -4.7737 -0.7128 -5.9964 17 6 -4.9261 -2.8261 -6.3176 18 7 -6.1820 -2.7722 -6.7077 19 14 -4.0388 -4.4685 -6.2495 20 1 -4.2227 -5.0752 -4.9066 21 1 -4.5977 -5.3763 -7.2834 22 1 -2.5909 -4.2599 -6.5044 23 6 -0.7248 -0.5794 -5.3294 24 6 2.9075 -1.9116 -0.6783 25 6 3.2701 -1.4200 0.7456 26 7 2.0354 -0.7238 1.1895 27 6 2.3225 0.2077 2.2885 28 1 -0.3633 -1.0255 0.0673 29 1 -0.3634 0.5709 0.8544 30 1 -0.3633 0.4544 -0.9218 31 1 0.8326 0.2648 -3.3315 32 1 -1.8757 0.6652 -3.3217 33 1 -2.7250 -0.9182 -3.0522 34 1 -2.4946 -2.5718 -5.5121 35 1 -6.6467 -3.5853 -6.9602 36 1 -0.4049 -1.3091 -6.0733 37 1 -0.2412 0.3897 -5.4518 38 1 2.3240 -2.8311 -0.6318 39 1 3.8066 -2.0539 -1.2779 40 1 3.4921 -2.2637 1.3990 41 1 4.1129 -0.7295 0.7112 42 1 3.0448 0.9525 1.9543 43 1 1.4017 0.7056 2.5927 44 1 2.7338 -0.3436 3.1340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020171165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = 6.285552 kcal Electronic energy + Delta-G solvation = -22692.472540 eV Core-core repulsion = 19452.796554 eV Total energy + Delta-G solvation = -3239.675986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67988 -39.00259 -37.63081 -34.13308 -32.91039 -32.28625 -31.55661 -30.28193 -26.97766 -25.24713 -25.12422 -24.53462 -22.80855 -21.68965 -21.19884 -19.76130 -18.75670 -17.65727 -17.11822 -16.48183 -16.00545 -15.46154 -14.91414 -14.86808 -14.69225 -14.24001 -13.90777 -13.45439 -13.07654 -12.81220 -12.77158 -12.62675 -12.45773 -12.17180 -12.08534 -12.01602 -11.86112 -11.58381 -11.41033 -11.11507 -10.98909 -10.93168 -10.81944 -10.35717 -10.31776 -9.88333 -9.63925 -9.52578 -8.93987 -8.75953 -8.74499 -7.30751 -5.79075 -3.15720 2.67314 3.24859 3.39478 3.43535 3.47774 3.63489 4.27449 4.29602 4.58663 4.60660 4.87644 4.90010 4.96276 5.01216 5.05851 5.08876 5.13188 5.17684 5.22061 5.39060 5.41239 5.50766 5.54165 5.58306 5.69814 5.71525 5.77107 5.80834 5.99771 6.00181 6.10708 6.22762 6.28794 6.51034 6.58257 6.58860 6.69097 6.73407 6.90474 7.61693 7.97546 8.33929 8.40268 9.17625 9.90154 10.08472 11.38809 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.003544 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.887929 B = 7898.100457 C = 8076.193208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.059 0.941 4 C -0.120 4.120 5 H 0.091 0.909 6 C 0.526 3.474 7 O -0.531 6.531 8 N -0.719 5.719 9 C 0.123 3.877 10 H 0.109 0.891 11 C -0.181 4.181 12 C 0.177 3.823 13 H 0.076 0.924 14 N -0.730 5.730 15 C -0.249 4.249 16 H 0.093 0.907 17 C 0.008 3.992 18 N -0.931 5.931 19 Si 0.882 3.118 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.166 4.166 24 C -0.112 4.112 25 C 0.036 3.964 26 N -0.514 5.514 27 C 0.016 3.984 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.026 0.974 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.171 8.832 13.664 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 H 0.077 0.923 4 C -0.142 4.142 5 H 0.109 0.891 6 C 0.311 3.689 7 O -0.407 6.407 8 N -0.369 5.369 9 C 0.019 3.981 10 H 0.127 0.873 11 C -0.224 4.224 12 C 0.064 3.936 13 H 0.094 0.906 14 N -0.370 5.370 15 C -0.379 4.379 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.578 5.578 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.206 4.206 24 C -0.151 4.151 25 C -0.092 4.092 26 N -0.239 5.239 27 C -0.132 4.132 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.139 7.737 13.978 26.497 hybrid contribution 1.394 -0.093 -0.282 1.425 sum 22.533 7.643 13.696 27.454 Atomic orbital electron populations 1.21961 0.93134 1.04001 1.01649 1.22287 0.97074 0.95184 0.88214 0.92335 1.22277 0.96235 0.99006 0.96705 0.89110 1.20168 0.83836 0.84659 0.80191 1.90714 1.59503 1.22281 1.68228 1.46182 1.35992 1.23804 1.30963 1.22629 0.85362 0.99663 0.90472 0.87307 1.24268 0.96666 0.99514 1.01911 1.20859 0.89470 0.91152 0.92099 0.90557 1.42541 1.11746 1.03088 1.79597 1.19088 0.85913 0.95744 1.37106 0.88968 1.24671 0.95829 0.97376 1.00971 1.69698 1.09678 1.27664 1.50798 0.86585 0.79179 0.85244 0.77771 1.20822 1.21606 1.20282 1.23913 0.99943 1.01116 0.95600 1.22516 0.99098 0.98721 0.94718 1.23234 0.91109 0.98511 0.96300 1.64782 1.26464 1.26314 1.06321 1.22524 1.00784 0.95112 0.94830 0.90482 0.92561 0.91821 0.77068 0.90888 0.90859 0.80381 0.92953 0.91050 0.89936 0.88552 0.90699 0.89651 0.93729 0.95500 0.91192 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.08 0.79 3.09 -66.52 -0.21 0.59 16 3 H 0.06 0.48 7.70 -51.93 -0.40 0.08 16 4 C -0.12 -1.18 3.37 -90.42 -0.30 -1.49 16 5 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 6 C 0.53 7.01 4.73 -10.98 -0.05 6.96 16 7 O -0.53 -9.53 14.52 5.56 0.08 -9.45 16 8 N -0.72 -8.60 4.95 -53.01 -0.26 -8.86 16 9 C 0.12 1.87 4.11 -67.12 -0.28 1.60 16 10 H 0.11 2.00 7.46 -51.93 -0.39 1.62 16 11 C -0.18 -2.99 7.68 -25.92 -0.20 -3.19 16 12 C 0.18 3.27 4.56 -67.11 -0.31 2.97 16 13 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 14 N -0.73 -17.22 5.11 -52.64 -0.27 -17.48 16 15 C -0.25 -7.01 10.45 -15.06 -0.16 -7.16 16 16 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 19 Si 0.88 22.49 27.73 -169.99 -4.71 17.77 16 20 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 23 C -0.17 -2.41 7.58 -25.92 -0.20 -2.61 16 24 C -0.11 -1.09 6.56 -24.87 -0.16 -1.26 16 25 C 0.04 0.31 6.56 -1.90 -0.01 0.30 16 26 N -0.51 -5.15 5.19 -230.61 -1.20 -6.34 16 27 C 0.02 0.12 9.41 60.06 0.57 0.69 16 28 H 0.08 1.15 7.00 -51.93 -0.36 0.78 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.73 7.12 -51.93 -0.37 0.36 16 31 H 0.40 3.44 8.73 -40.82 -0.36 3.08 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.36 8.56 5.76 -40.82 -0.24 8.33 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.10 1.21 6.93 -51.93 -0.36 0.85 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.31 8.00 -51.93 -0.42 -0.10 16 42 H 0.03 0.18 8.00 -51.93 -0.42 -0.24 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -33.44 346.75 -9.00 -42.43 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.54 Total: 9.17 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.09 Total: -3.90 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.95 Total: -61.25 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.44 -9.00 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020171165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.718 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds