Wall clock time and date at job start Tue Mar 31 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.05995 * 2 1 4 4 C 1.53991 * 109.91808 * 238.79301 * 2 1 3 5 5 H 1.09002 * 110.30763 * 120.40651 * 4 2 1 6 6 C 1.50702 * 110.31055 * 358.33657 * 4 2 1 7 7 O 1.21274 * 120.00125 * 275.61582 * 6 4 2 8 8 N 1.34777 * 119.99735 * 95.61461 * 6 4 2 9 9 C 1.46501 * 119.99782 * 179.97438 * 8 6 4 10 10 H 1.09003 * 112.84903 * 336.20068 * 9 8 6 11 11 C 1.53782 * 113.68906 * 107.46416 * 9 8 6 12 12 C 1.53783 * 87.08196 * 139.99225 * 11 9 8 13 13 H 1.08995 * 113.69153 * 220.00638 * 12 11 9 14 14 N 1.46501 * 113.61291 * 89.11374 * 12 11 9 15 15 C 1.36936 * 119.99611 * 107.50256 * 14 12 11 16 16 H 1.07996 * 120.00324 * 0.02562 * 15 14 12 17 17 C 1.38816 * 119.99758 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99898 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99930 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47024 * 90.00126 * 19 17 15 21 21 H 1.48498 * 109.47282 * 209.99617 * 19 17 15 22 22 H 1.48493 * 109.47545 * 330.00099 * 19 17 15 23 23 C 1.53782 * 113.61414 * 204.99850 * 9 8 6 24 24 C 1.54590 * 105.22490 * 239.37040 * 4 2 1 25 25 C 1.54940 * 102.92422 * 338.09548 * 24 4 2 26 26 N 1.48127 * 109.95008 * 121.31861 * 2 1 3 27 27 C 1.46894 * 110.95334 * 265.20507 * 26 2 1 28 28 H 1.08999 * 109.47030 * 183.75365 * 1 2 3 29 29 H 1.08997 * 109.47387 * 303.75216 * 1 2 3 30 30 H 1.09006 * 109.46891 * 63.75708 * 1 2 3 31 31 H 0.96998 * 120.00199 * 359.97438 * 8 6 4 32 32 H 1.09002 * 113.61510 * 25.44225 * 11 9 8 33 33 H 1.08998 * 113.61724 * 254.54206 * 11 9 8 34 34 H 0.96998 * 120.00415 * 287.77897 * 14 12 11 35 35 H 0.96998 * 119.99934 * 179.97438 * 18 17 15 36 36 H 1.08998 * 113.61123 * 105.38716 * 23 9 8 37 37 H 1.08994 * 113.69069 * 334.49661 * 23 9 8 38 38 H 1.09000 * 110.72694 * 96.44986 * 24 4 2 39 39 H 1.09003 * 110.72549 * 219.73377 * 24 4 2 40 40 H 1.08995 * 110.66694 * 155.84983 * 25 24 4 41 41 H 1.09007 * 110.66536 * 278.81257 * 25 24 4 42 42 H 1.08998 * 109.47377 * 302.50477 * 27 26 2 43 43 H 1.09005 * 109.47116 * 62.50525 * 27 26 2 44 44 H 1.08998 * 109.47413 * 182.50141 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 2.6700 -0.0890 -1.8486 6 6 0.9046 -1.2894 -2.0493 7 8 0.4041 -2.3549 -1.7578 8 7 0.4325 -0.5876 -3.0986 9 6 -0.6851 -1.1121 -3.8873 10 1 -0.7793 -2.1959 -3.8194 11 6 -2.0085 -0.3632 -3.6578 12 6 -2.2519 -0.4902 -5.1709 13 1 -2.6862 0.4023 -5.6211 14 7 -2.9541 -1.7184 -5.5513 15 6 -4.2608 -1.6624 -5.9567 16 1 -4.7737 -0.7128 -5.9964 17 6 -4.9261 -2.8261 -6.3176 18 7 -6.1820 -2.7722 -6.7077 19 14 -4.0388 -4.4685 -6.2495 20 1 -4.2227 -5.0752 -4.9066 21 1 -4.5977 -5.3763 -7.2834 22 1 -2.5909 -4.2599 -6.5044 23 6 -0.7248 -0.5794 -5.3294 24 6 2.9075 -1.9116 -0.6783 25 6 3.2701 -1.4200 0.7456 26 7 2.0354 -0.7238 1.1895 27 6 2.3225 0.2077 2.2885 28 1 -0.3633 -1.0255 0.0673 29 1 -0.3634 0.5709 0.8544 30 1 -0.3633 0.4544 -0.9218 31 1 0.8326 0.2648 -3.3315 32 1 -1.8757 0.6652 -3.3217 33 1 -2.7250 -0.9182 -3.0522 34 1 -2.4946 -2.5718 -5.5121 35 1 -6.6467 -3.5853 -6.9602 36 1 -0.4049 -1.3091 -6.0733 37 1 -0.2412 0.3897 -5.4518 38 1 2.3240 -2.8311 -0.6318 39 1 3.8066 -2.0539 -1.2779 40 1 3.4921 -2.2637 1.3990 41 1 4.1129 -0.7295 0.7112 42 1 3.0448 0.9525 1.9543 43 1 1.4017 0.7056 2.5927 44 1 2.7338 -0.3436 3.1340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020171165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:18 Heat of formation + Delta-G solvation = -19.606106 kcal Electronic energy + Delta-G solvation = -22693.595286 eV Core-core repulsion = 19452.796554 eV Total energy + Delta-G solvation = -3240.798732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65515 -40.15530 -38.72471 -35.79853 -34.34856 -33.26215 -32.44348 -32.10362 -27.80929 -26.52829 -26.12816 -25.84873 -24.44022 -22.76448 -21.95380 -20.84169 -20.24326 -19.50992 -18.07314 -17.53463 -17.03815 -16.53927 -16.24297 -16.15601 -15.75226 -15.52447 -14.94244 -14.77753 -14.68698 -14.15973 -13.86314 -13.72979 -13.53052 -13.42767 -13.21332 -13.12358 -12.92465 -12.72341 -12.49657 -12.28433 -12.21367 -12.13274 -11.90319 -11.85782 -11.77960 -11.68192 -11.32214 -10.96744 -10.67505 -9.93565 -9.37951 -9.32988 -8.06099 -5.39105 1.33988 1.38008 1.43135 1.65231 2.24342 2.44289 2.99038 3.24542 3.47971 3.51071 3.54760 3.68854 3.84208 3.90465 4.16593 4.21290 4.26050 4.30462 4.30843 4.45025 4.50006 4.50924 4.70897 4.76187 4.78740 4.81554 4.84316 4.95905 4.98291 5.02481 5.04174 5.11826 5.21017 5.24665 5.29175 5.33822 5.65658 5.77701 5.92535 6.11960 6.19829 6.66899 7.04233 7.36824 7.81650 7.97541 9.15224 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.003544 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.887929 B = 7898.100457 C = 8076.193208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.088 0.912 4 C -0.113 4.113 5 H 0.132 0.868 6 C 0.522 3.478 7 O -0.585 6.585 8 N -0.702 5.702 9 C 0.130 3.870 10 H 0.073 0.927 11 C -0.171 4.171 12 C 0.151 3.849 13 H 0.076 0.924 14 N -0.738 5.738 15 C -0.230 4.230 16 H 0.065 0.935 17 C -0.060 4.060 18 N -0.981 5.981 19 Si 0.947 3.053 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.253 1.253 23 C -0.137 4.137 24 C -0.115 4.115 25 C 0.041 3.959 26 N -0.545 5.545 27 C 0.017 3.983 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.418 0.582 32 H 0.106 0.894 33 H 0.036 0.964 34 H 0.363 0.637 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.066 0.934 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.057 10.748 14.112 31.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.106 0.894 4 C -0.135 4.135 5 H 0.150 0.850 6 C 0.310 3.690 7 O -0.465 6.465 8 N -0.354 5.354 9 C 0.024 3.976 10 H 0.091 0.909 11 C -0.213 4.213 12 C 0.041 3.959 13 H 0.094 0.906 14 N -0.379 5.379 15 C -0.361 4.361 16 H 0.083 0.917 17 C -0.252 4.252 18 N -0.631 5.631 19 Si 0.774 3.226 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.178 1.178 23 C -0.176 4.176 24 C -0.153 4.153 25 C -0.086 4.086 26 N -0.270 5.270 27 C -0.131 4.131 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.255 0.745 32 H 0.124 0.876 33 H 0.055 0.945 34 H 0.196 0.804 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.109 9.727 14.441 30.555 hybrid contribution 0.162 -0.577 -0.337 0.688 sum 25.271 9.149 14.104 30.352 Atomic orbital electron populations 1.21894 0.95125 1.01312 1.01984 1.22296 0.95438 0.96586 0.88153 0.89434 1.22358 0.94977 0.99544 0.96650 0.85049 1.20867 0.84186 0.83869 0.80052 1.90704 1.61314 1.24871 1.69565 1.45940 1.34817 1.24483 1.30136 1.22206 0.85935 0.97744 0.91705 0.90866 1.24152 0.96568 1.01074 0.99461 1.21223 0.92096 0.89123 0.93467 0.90562 1.42563 1.10418 1.05026 1.79918 1.19098 0.87647 0.94471 1.34911 0.91736 1.25421 0.96657 1.01135 1.01996 1.69857 1.11535 1.28453 1.53270 0.85535 0.79260 0.80586 0.77186 1.21337 1.21705 1.17802 1.23747 0.96086 1.03296 0.94474 1.22508 0.99400 0.97165 0.96216 1.23231 0.91281 0.98863 0.95230 1.64718 1.27725 1.27481 1.07034 1.22542 1.01128 0.95141 0.94299 0.94662 0.91880 0.91745 0.74451 0.87590 0.94536 0.80388 0.93279 0.91388 0.85359 0.92334 0.88418 0.89854 0.91222 0.93797 0.91503 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.37 71.98 0.60 -2.60 16 2 C 0.08 1.40 3.09 45.01 0.14 1.54 16 3 H 0.09 1.00 7.70 -2.39 -0.02 0.98 16 4 C -0.11 -1.88 3.37 -10.66 -0.04 -1.91 16 5 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 6 C 0.52 13.16 4.73 87.66 0.41 13.57 16 7 O -0.59 -21.49 14.52 -3.01 -0.04 -21.53 16 8 N -0.70 -14.78 4.95 -440.03 -2.18 -16.96 16 9 C 0.13 3.74 4.11 45.52 0.19 3.93 16 10 H 0.07 2.71 7.46 -2.39 -0.02 2.69 16 11 C -0.17 -5.45 7.68 31.12 0.24 -5.21 16 12 C 0.15 5.41 4.56 45.52 0.21 5.62 16 13 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 14 N -0.74 -34.87 5.11 -320.44 -1.64 -36.51 16 15 C -0.23 -13.26 10.45 84.03 0.88 -12.39 16 16 H 0.06 4.00 8.06 -2.91 -0.02 3.98 16 17 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 18 N -0.98 -63.82 13.97 21.65 0.30 -63.52 16 19 Si 0.95 47.40 27.73 68.60 1.90 49.30 16 20 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 21 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.25 -11.55 6.52 99.48 0.65 -10.90 16 23 C -0.14 -3.53 7.58 31.12 0.24 -3.29 16 24 C -0.11 -1.99 6.56 31.80 0.21 -1.79 16 25 C 0.04 0.59 6.56 86.65 0.57 1.16 16 26 N -0.54 -9.73 5.19 -883.51 -4.59 -14.32 16 27 C 0.02 0.21 9.41 127.69 1.20 1.42 16 28 H 0.03 1.07 7.00 -2.39 -0.02 1.05 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.35 7.12 -2.38 -0.02 1.34 16 31 H 0.42 5.19 8.73 -92.71 -0.81 4.38 16 32 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.36 16.99 5.76 -92.71 -0.53 16.46 16 35 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.13 2.20 8.12 -2.39 -0.02 2.18 16 38 H 0.06 1.49 6.93 -2.39 -0.02 1.47 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 0.68 8.00 -2.38 -0.02 0.66 16 42 H 0.04 0.40 8.00 -2.39 -0.02 0.38 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -77.92 346.75 -1.34 -79.26 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.41 Total: 27.41 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.31 Total: -3.13 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -8.10 Total: -131.32 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.04 Total: -21.53 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.30 kcal Total: -77.92 -1.34 -79.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020171165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.656 kcal (2) G-P(sol) polarization free energy of solvation -77.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds