Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 C 1.50698 * 109.57405 * 182.40811 * 5 4 3 7 7 O 1.21279 * 120.00019 * 119.71645 * 6 5 4 8 8 N 1.34776 * 119.99888 * 299.71723 * 6 5 4 9 9 C 1.46503 * 120.00126 * 180.02562 * 8 6 5 10 10 H 1.09000 * 112.84837 * 334.66601 * 9 8 6 11 11 C 1.53787 * 113.61550 * 105.85900 * 9 8 6 12 12 C 1.54046 * 86.98340 * 89.16259 * 11 9 8 13 13 H 1.08999 * 113.61344 * 270.88089 * 12 11 9 14 14 N 1.46507 * 113.69603 * 139.98786 * 12 11 9 15 15 C 1.36939 * 119.99878 * 107.46356 * 14 12 11 16 16 H 1.07995 * 120.00008 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99950 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99808 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00152 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46970 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47314 * 119.99479 * 19 17 15 22 22 H 1.48497 * 109.47267 * 239.99990 * 19 17 15 23 23 C 1.53779 * 113.61766 * 203.46818 * 9 8 6 24 24 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 25 25 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 26 26 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 27 27 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 28 28 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 29 29 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 30 30 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 31 31 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 32 32 H 1.09004 * 109.50459 * 179.12275 * 4 3 2 33 33 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 34 34 H 0.97001 * 120.00098 * 359.97438 * 8 6 5 35 35 H 1.09001 * 113.61007 * 203.66330 * 11 9 8 36 36 H 1.09003 * 113.61038 * 334.56783 * 11 9 8 37 37 H 0.97004 * 119.99857 * 287.47313 * 14 12 11 38 38 H 0.97008 * 120.00257 * 180.02562 * 18 17 15 39 39 H 1.09006 * 113.61058 * 25.42633 * 23 9 8 40 40 H 1.08997 * 113.61778 * 156.24926 * 23 9 8 41 41 H 1.08995 * 109.50416 * 297.70785 * 24 5 4 42 42 H 1.09001 * 109.50010 * 177.59436 * 24 5 4 43 43 H 1.09007 * 109.46691 * 305.86028 * 25 2 1 44 44 H 1.09003 * 109.46576 * 65.83652 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 5.6135 0.4461 -0.8447 7 8 6.1471 -0.6379 -0.7393 8 7 6.3572 1.5695 -0.8101 9 6 7.8103 1.4813 -0.6457 10 1 8.1243 0.5685 -0.1395 11 6 8.5950 1.7711 -1.9362 12 6 8.5837 3.2525 -1.5137 13 1 7.7140 3.8024 -1.8733 14 7 9.8456 3.9492 -1.7757 15 6 9.9243 4.8645 -2.7913 16 1 9.0561 5.0730 -3.3987 17 6 11.1200 5.5242 -3.0399 18 7 12.1783 5.2696 -2.2999 19 14 11.2273 6.7732 -4.4247 20 1 9.9092 6.8768 -5.1010 21 1 11.6031 8.0979 -3.8686 22 1 12.2544 6.3384 -5.4050 23 6 8.4432 2.7567 -0.0648 24 6 3.5181 -0.8716 -1.0209 25 6 1.9952 -0.7707 -1.1337 26 1 -0.3634 -1.0249 0.0754 27 1 -0.3633 0.4472 -0.9253 28 1 -0.3633 0.5778 0.8499 29 1 1.7325 1.8608 -0.9375 30 1 1.5635 1.9256 0.8331 31 1 3.7815 0.8566 1.0906 32 1 3.9101 2.3511 0.1311 33 1 3.8888 1.0354 -1.9560 34 1 5.9305 2.4365 -0.8948 35 1 9.5911 1.3287 -1.9501 36 1 8.0288 1.5706 -2.8458 37 1 10.6253 3.7620 -1.2299 38 1 13.0139 5.7309 -2.4733 39 1 7.7545 3.3515 0.5353 40 1 9.3971 2.5831 0.4332 41 1 3.7813 -1.3838 -0.0955 42 1 3.9098 -1.4303 -1.8709 43 1 1.5633 -1.7715 -1.1244 44 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020542111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = -9.878584 kcal Electronic energy + Delta-G solvation = -22114.664983 eV Core-core repulsion = 18874.288068 eV Total energy + Delta-G solvation = -3240.376915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.40468 -38.93550 -37.70219 -34.09268 -33.80732 -32.45501 -31.09910 -29.87055 -27.48358 -25.12464 -24.71007 -23.68223 -23.40568 -22.14389 -20.94514 -19.80017 -18.93749 -17.38347 -17.01329 -16.16378 -15.72289 -15.41329 -15.13442 -14.91968 -14.75655 -14.16531 -13.93813 -13.86424 -13.48756 -13.17853 -12.78124 -12.74453 -12.62104 -12.04359 -11.99783 -11.85319 -11.65779 -11.52040 -11.40516 -10.93896 -10.92138 -10.80286 -10.72175 -10.31584 -10.20145 -9.92190 -9.63404 -9.55818 -8.92355 -8.75172 -8.68356 -6.99511 -5.81600 -3.10589 2.70117 3.24161 3.40193 3.45717 3.48110 3.57741 4.38876 4.46272 4.56055 4.61410 4.80565 4.93660 4.98632 5.05465 5.10423 5.15954 5.22736 5.24024 5.31601 5.40290 5.44639 5.49840 5.50459 5.51051 5.64768 5.75982 5.86269 5.90821 5.93277 6.13682 6.16397 6.25121 6.32617 6.52828 6.63216 6.70099 6.70512 6.72771 7.08644 7.63640 7.66142 8.33334 8.36788 9.48070 10.05657 10.40015 11.40777 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.002921 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.570988 B = 9584.490762 C = 9984.225049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.108 4.108 5 C -0.109 4.109 6 C 0.519 3.481 7 O -0.542 6.542 8 N -0.706 5.706 9 C 0.115 3.885 10 H 0.094 0.906 11 C -0.176 4.176 12 C 0.167 3.833 13 H 0.073 0.927 14 N -0.712 5.712 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.159 4.159 24 C -0.096 4.096 25 C 0.055 3.945 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.679 -9.225 5.122 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.146 4.146 5 C -0.131 4.131 6 C 0.305 3.695 7 O -0.419 6.419 8 N -0.357 5.357 9 C 0.010 3.990 10 H 0.112 0.888 11 C -0.219 4.219 12 C 0.055 3.945 13 H 0.091 0.909 14 N -0.350 5.350 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.198 4.198 24 C -0.134 4.134 25 C -0.073 4.073 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.233 0.767 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -22.127 -10.074 5.475 24.921 hybrid contribution -0.039 1.490 -1.461 2.087 sum -22.166 -8.584 4.014 24.106 Atomic orbital electron populations 1.22352 0.87216 1.02300 1.00452 1.61926 1.07578 1.13798 1.43671 1.22090 0.95044 0.89175 1.00807 1.21593 0.94530 1.00011 0.98476 1.21404 0.91766 0.99176 1.00709 1.20518 0.88924 0.84176 0.75870 1.90686 1.73957 1.27762 1.49510 1.45744 1.07484 1.08758 1.73678 1.21812 0.78858 0.99352 0.99005 0.88799 1.24341 0.99738 1.01652 0.96118 1.21662 0.90834 0.90234 0.91780 0.90925 1.42414 1.07794 1.46683 1.38130 1.19331 0.96091 1.14408 1.07719 0.91090 1.24775 0.95955 1.00571 0.99616 1.69670 1.01237 1.45648 1.41371 0.86118 0.77386 0.81070 0.81601 1.20546 1.21827 1.21814 1.23843 1.00788 0.95657 0.99560 1.21397 0.93028 0.94905 1.04075 1.22146 0.95572 0.98361 0.91186 0.91316 0.95713 0.91343 0.94605 0.90313 0.90310 0.90721 0.88872 0.76658 0.89657 0.92512 0.78007 0.93464 0.91790 0.89070 0.90136 0.90682 0.90386 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.59 60.07 0.58 0.74 16 2 N -0.54 -4.52 4.91 -242.96 -1.19 -5.71 16 3 C 0.06 0.43 5.46 -3.83 -0.02 0.41 16 4 C -0.11 -0.90 5.26 -26.65 -0.14 -1.04 16 5 C -0.11 -1.07 2.59 -91.65 -0.24 -1.31 16 6 C 0.52 6.94 7.16 -10.99 -0.08 6.86 16 7 O -0.54 -9.39 15.60 5.56 0.09 -9.30 16 8 N -0.71 -9.00 5.17 -53.01 -0.27 -9.28 16 9 C 0.12 1.75 4.30 -67.11 -0.29 1.46 16 10 H 0.09 1.52 7.50 -51.93 -0.39 1.13 16 11 C -0.18 -3.13 7.70 -25.78 -0.20 -3.33 16 12 C 0.17 3.19 4.37 -66.97 -0.29 2.89 16 13 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 14 N -0.71 -17.56 5.41 -52.50 -0.28 -17.84 16 15 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 C -0.16 -2.50 7.57 -25.92 -0.20 -2.69 16 24 C -0.10 -0.96 4.68 -26.65 -0.12 -1.08 16 25 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.53 8.09 -51.92 -0.42 0.11 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.52 7.67 -51.93 -0.40 0.13 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.19 8.19 -40.82 -0.33 3.86 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.39 10.11 7.93 -40.82 -0.32 9.79 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 41 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -32.00 352.04 -9.67 -41.66 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.74 Total: 9.19 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.27 Total: -3.96 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -1.03 Total: -60.03 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.00 -9.67 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020542111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.786 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds