Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 C 1.50698 * 109.57405 * 182.40811 * 5 4 3 7 7 O 1.21279 * 120.00019 * 119.71645 * 6 5 4 8 8 N 1.34776 * 119.99888 * 299.71723 * 6 5 4 9 9 C 1.46503 * 120.00126 * 180.02562 * 8 6 5 10 10 H 1.09000 * 112.84837 * 334.66601 * 9 8 6 11 11 C 1.53787 * 113.61550 * 105.85900 * 9 8 6 12 12 C 1.54046 * 86.98340 * 89.16259 * 11 9 8 13 13 H 1.08999 * 113.61344 * 270.88089 * 12 11 9 14 14 N 1.46507 * 113.69603 * 139.98786 * 12 11 9 15 15 C 1.36939 * 119.99878 * 107.46356 * 14 12 11 16 16 H 1.07995 * 120.00008 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99950 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99808 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00152 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46970 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47314 * 119.99479 * 19 17 15 22 22 H 1.48497 * 109.47267 * 239.99990 * 19 17 15 23 23 C 1.53779 * 113.61766 * 203.46818 * 9 8 6 24 24 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 25 25 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 26 26 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 27 27 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 28 28 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 29 29 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 30 30 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 31 31 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 32 32 H 1.09004 * 109.50459 * 179.12275 * 4 3 2 33 33 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 34 34 H 0.97001 * 120.00098 * 359.97438 * 8 6 5 35 35 H 1.09001 * 113.61007 * 203.66330 * 11 9 8 36 36 H 1.09003 * 113.61038 * 334.56783 * 11 9 8 37 37 H 0.97004 * 119.99857 * 287.47313 * 14 12 11 38 38 H 0.97008 * 120.00257 * 180.02562 * 18 17 15 39 39 H 1.09006 * 113.61058 * 25.42633 * 23 9 8 40 40 H 1.08997 * 113.61778 * 156.24926 * 23 9 8 41 41 H 1.08995 * 109.50416 * 297.70785 * 24 5 4 42 42 H 1.09001 * 109.50010 * 177.59436 * 24 5 4 43 43 H 1.09007 * 109.46691 * 305.86028 * 25 2 1 44 44 H 1.09003 * 109.46576 * 65.83652 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 5.6135 0.4461 -0.8447 7 8 6.1471 -0.6379 -0.7393 8 7 6.3572 1.5695 -0.8101 9 6 7.8103 1.4813 -0.6457 10 1 8.1243 0.5685 -0.1395 11 6 8.5950 1.7711 -1.9362 12 6 8.5837 3.2525 -1.5137 13 1 7.7140 3.8024 -1.8733 14 7 9.8456 3.9492 -1.7757 15 6 9.9243 4.8645 -2.7913 16 1 9.0561 5.0730 -3.3987 17 6 11.1200 5.5242 -3.0399 18 7 12.1783 5.2696 -2.2999 19 14 11.2273 6.7732 -4.4247 20 1 9.9092 6.8768 -5.1010 21 1 11.6031 8.0979 -3.8686 22 1 12.2544 6.3384 -5.4050 23 6 8.4432 2.7567 -0.0648 24 6 3.5181 -0.8716 -1.0209 25 6 1.9952 -0.7707 -1.1337 26 1 -0.3634 -1.0249 0.0754 27 1 -0.3633 0.4472 -0.9253 28 1 -0.3633 0.5778 0.8499 29 1 1.7325 1.8608 -0.9375 30 1 1.5635 1.9256 0.8331 31 1 3.7815 0.8566 1.0906 32 1 3.9101 2.3511 0.1311 33 1 3.8888 1.0354 -1.9560 34 1 5.9305 2.4365 -0.8948 35 1 9.5911 1.3287 -1.9501 36 1 8.0288 1.5706 -2.8458 37 1 10.6253 3.7620 -1.2299 38 1 13.0139 5.7309 -2.4733 39 1 7.7545 3.3515 0.5353 40 1 9.3971 2.5831 0.4332 41 1 3.7813 -1.3838 -0.0955 42 1 3.9098 -1.4303 -1.8709 43 1 1.5633 -1.7715 -1.1244 44 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020542111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = -32.801669 kcal Electronic energy + Delta-G solvation = -22115.659002 eV Core-core repulsion = 18874.288068 eV Total energy + Delta-G solvation = -3241.370935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46514 -39.96523 -38.82660 -35.77300 -34.73751 -33.82854 -31.91621 -31.60259 -28.19100 -26.57344 -26.37024 -24.68443 -24.10123 -23.58320 -21.90292 -20.60589 -20.36372 -19.16167 -18.23999 -17.24673 -16.77866 -16.56621 -16.09791 -15.99600 -15.64041 -15.56990 -15.38540 -15.05858 -14.47961 -14.29352 -14.05985 -13.50620 -13.44219 -13.34308 -13.32758 -13.24450 -12.84446 -12.64187 -12.49136 -12.23302 -12.13348 -12.10521 -11.84006 -11.74468 -11.67258 -11.41732 -11.19314 -10.85165 -10.72249 -10.00172 -9.24610 -8.98986 -7.94971 -5.23511 1.48020 1.48618 1.58437 1.63004 2.16831 2.56518 3.01892 3.36706 3.59069 3.69976 3.76232 3.83855 3.88058 3.96344 4.18485 4.25383 4.32165 4.33346 4.38090 4.48013 4.58031 4.60233 4.72411 4.75104 4.78414 4.90913 4.91119 4.92246 4.97409 5.07187 5.10081 5.13438 5.19610 5.21172 5.26652 5.37126 5.51328 5.72354 6.14485 6.16543 6.27190 6.59370 7.27950 7.33310 8.09950 8.32243 9.28545 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.002921 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.570988 B = 9584.490762 C = 9984.225049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.562 5.562 3 C 0.058 3.942 4 C -0.103 4.103 5 C -0.101 4.101 6 C 0.518 3.482 7 O -0.585 6.585 8 N -0.696 5.696 9 C 0.133 3.867 10 H 0.085 0.915 11 C -0.174 4.174 12 C 0.155 3.845 13 H 0.085 0.915 14 N -0.728 5.728 15 C -0.242 4.242 16 H 0.079 0.921 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.293 1.293 22 H -0.297 1.297 23 C -0.141 4.141 24 C -0.094 4.094 25 C 0.061 3.939 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.282 -8.382 4.881 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.070 4.070 4 C -0.141 4.141 5 C -0.122 4.122 6 C 0.306 3.694 7 O -0.465 6.465 8 N -0.347 5.347 9 C 0.027 3.973 10 H 0.103 0.897 11 C -0.216 4.216 12 C 0.045 3.955 13 H 0.102 0.898 14 N -0.365 5.365 15 C -0.373 4.373 16 H 0.097 0.903 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.801 3.199 20 H -0.188 1.188 21 H -0.221 1.221 22 H -0.224 1.224 23 C -0.181 4.181 24 C -0.132 4.132 25 C -0.067 4.067 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.251 0.749 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.813 -9.228 5.234 26.986 hybrid contribution 0.706 1.139 -1.361 1.910 sum -24.106 -8.089 3.873 25.721 Atomic orbital electron populations 1.22380 0.86023 1.02785 1.01042 1.61924 1.08765 1.14312 1.43735 1.22113 0.94154 0.89002 1.01732 1.21588 0.95337 1.00399 0.96818 1.21415 0.88825 0.99599 1.02356 1.21185 0.90353 0.83389 0.74508 1.90674 1.75026 1.29408 1.51398 1.45635 1.06294 1.09591 1.73217 1.21480 0.80151 0.98771 0.96934 0.89650 1.24200 0.99413 1.00565 0.97412 1.22002 0.89020 0.90173 0.94319 0.89757 1.42619 1.09305 1.46949 1.37616 1.19744 0.96073 1.13819 1.07714 0.90284 1.25585 0.95935 1.03136 1.02372 1.69824 1.01633 1.47253 1.43409 0.85091 0.77691 0.78396 0.78692 1.18781 1.22059 1.22443 1.23652 1.01194 0.95576 0.97674 1.21344 0.94588 0.94765 1.02533 1.22070 0.93974 0.98972 0.91677 0.91006 0.95169 0.90618 0.93709 0.89237 0.91824 0.88936 0.86942 0.74916 0.91435 0.92708 0.79425 0.94075 0.89315 0.89670 0.92329 0.91593 0.89879 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 127.69 1.22 1.49 16 2 N -0.56 -8.09 4.91 -922.58 -4.53 -12.62 16 3 C 0.06 0.70 5.46 86.33 0.47 1.17 16 4 C -0.10 -1.46 5.26 30.65 0.16 -1.30 16 5 C -0.10 -1.78 2.59 -11.46 -0.03 -1.81 16 6 C 0.52 13.18 7.16 87.66 0.63 13.81 16 7 O -0.59 -20.22 15.60 -3.03 -0.05 -20.27 16 8 N -0.70 -16.31 5.17 -440.03 -2.28 -18.58 16 9 C 0.13 3.88 4.30 45.52 0.20 4.08 16 10 H 0.09 2.72 7.50 -2.39 -0.02 2.71 16 11 C -0.17 -6.08 7.70 31.21 0.24 -5.84 16 12 C 0.15 5.71 4.37 45.61 0.20 5.91 16 13 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 14 N -0.73 -35.77 5.41 -320.00 -1.73 -37.50 16 15 C -0.24 -13.11 9.97 84.03 0.84 -12.27 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 18 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 19 Si 0.97 45.54 29.55 68.60 2.03 47.56 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 23 C -0.14 -4.22 7.57 31.12 0.24 -3.98 16 24 C -0.09 -1.79 4.68 30.65 0.14 -1.65 16 25 C 0.06 0.89 5.46 86.33 0.47 1.36 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.08 0.67 8.09 -2.38 -0.02 0.66 16 29 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.92 8.09 -2.38 -0.02 0.90 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 0.97 7.67 -2.38 -0.02 0.95 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.41 7.37 8.19 -92.71 -0.76 6.61 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.37 19.90 7.93 -92.71 -0.73 19.17 16 38 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 39 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.08 2.69 8.12 -2.39 -0.02 2.68 16 41 H 0.06 1.37 8.04 -2.39 -0.02 1.35 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.11 8.12 -2.38 -0.02 1.09 16 44 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -69.12 352.04 -1.54 -70.66 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.51 Total: 32.59 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.25 Total: -3.00 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -8.25 Total: -127.55 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.27 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.12 -1.54 -70.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020542111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.862 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds