Wall clock time and date at job start Tue Mar 31 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.72540 * 2 1 4 4 C 1.54943 * 110.66788 * 236.90486 * 2 1 3 5 5 C 1.54589 * 102.92076 * 204.14878 * 4 2 1 6 6 C 1.54000 * 105.14119 * 21.96043 * 5 4 2 7 7 N 1.47899 * 107.05560 * 1.22137 * 6 5 4 8 8 C 1.46900 * 110.99718 * 214.15814 * 7 6 5 9 9 C 1.50699 * 109.47257 * 294.27366 * 8 7 6 10 10 O 1.21276 * 120.00143 * 353.80095 * 9 8 7 11 11 N 1.34773 * 120.00080 * 173.80238 * 9 8 7 12 12 C 1.46502 * 120.00329 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.84689 * 23.80131 * 12 11 9 14 14 C 1.53782 * 113.61473 * 154.99887 * 12 11 9 15 15 C 1.53778 * 87.07931 * 89.12074 * 14 12 11 16 16 H 1.09003 * 113.61060 * 270.79352 * 15 14 12 17 17 N 1.46499 * 113.61624 * 139.98379 * 15 14 12 18 18 C 1.36935 * 120.00392 * 154.99621 * 17 15 14 19 19 H 1.08003 * 119.99836 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00054 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00113 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47400 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.47318 * 300.00059 * 22 20 18 25 25 H 1.48506 * 109.47304 * 60.00050 * 22 20 18 26 26 C 1.53777 * 113.61521 * 252.49950 * 12 11 9 27 27 H 1.08996 * 109.46625 * 296.90191 * 1 2 3 28 28 H 1.08999 * 109.47015 * 56.90873 * 1 2 3 29 29 H 1.09001 * 109.46535 * 176.90254 * 1 2 3 30 30 H 1.09001 * 110.72379 * 85.79091 * 4 2 1 31 31 H 1.08997 * 110.87238 * 322.58259 * 4 2 1 32 32 H 1.09000 * 110.31055 * 263.04113 * 5 4 2 33 33 H 1.09000 * 110.39267 * 140.91365 * 5 4 2 34 34 H 1.09000 * 109.91546 * 241.87155 * 6 5 4 35 35 H 1.08997 * 110.08329 * 120.66887 * 6 5 4 36 36 H 1.09007 * 109.46791 * 174.27519 * 8 7 6 37 37 H 1.09001 * 109.47189 * 54.27826 * 8 7 6 38 38 H 0.97000 * 120.00091 * 0.02562 * 11 9 8 39 39 H 1.08997 * 113.61567 * 334.56571 * 14 12 11 40 40 H 1.08999 * 113.68717 * 203.67463 * 14 12 11 41 41 H 0.97002 * 119.99569 * 334.99271 * 17 15 14 42 42 H 0.97000 * 119.99876 * 179.97438 * 21 20 18 43 43 H 1.08996 * 113.61727 * 156.33469 * 26 12 11 44 44 H 1.08998 * 113.61603 * 25.42473 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0769 -0.7916 -1.2145 5 6 3.4853 -1.2196 -0.7423 6 6 3.4279 -1.1647 0.7956 7 7 2.0543 -0.7589 1.1642 8 6 2.0581 0.0719 2.3757 9 6 2.5226 -0.7523 3.5486 10 8 2.7133 -1.9426 3.4158 11 7 2.7262 -0.1668 4.7453 12 6 3.1784 -0.9679 5.8855 13 1 3.6980 -1.8774 5.5841 14 6 3.9301 -0.1532 6.9514 15 6 2.5626 0.1039 7.6062 16 1 2.0586 0.9939 7.2294 17 7 2.5921 0.0436 9.0697 18 6 1.6544 0.7214 9.8020 19 1 0.8932 1.3009 9.3006 20 6 1.6820 0.6638 11.1886 21 7 2.6093 -0.0428 11.7996 22 14 0.4032 1.5891 12.1875 23 1 0.6495 1.3663 13.6349 24 1 0.4954 3.0405 11.8868 25 1 -0.9524 1.0957 11.8349 26 6 2.0887 -1.2012 6.9452 27 1 -0.3632 0.4650 0.9164 28 1 -0.3633 0.5611 -0.8610 29 1 -0.3632 -1.0262 -0.0555 30 1 2.1431 -0.1513 -2.0942 31 1 1.4572 -1.6643 -1.4202 32 1 4.2374 -0.5258 -1.1179 33 1 3.7062 -2.2333 -1.0766 34 1 4.1441 -0.4322 1.1680 35 1 3.6499 -2.1465 1.2137 36 1 1.0501 0.4401 2.5668 37 1 2.7328 0.9164 2.2350 38 1 2.5734 0.7852 4.8517 39 1 4.4029 0.7473 6.5596 40 1 4.6028 -0.7514 7.5659 41 1 3.2759 -0.4767 9.5199 42 1 2.6288 -0.0828 12.7685 43 1 2.2575 -2.0870 7.5575 44 1 1.0750 -1.1465 6.5485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020585316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:12 Heat of formation + Delta-G solvation = 0.272608 kcal Electronic energy + Delta-G solvation = -21993.808491 eV Core-core repulsion = 18753.871765 eV Total energy + Delta-G solvation = -3239.936726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23899 -39.07999 -37.64326 -34.00169 -32.84144 -32.23340 -31.63089 -29.89148 -26.93903 -25.70571 -25.11120 -24.37743 -22.26904 -21.43327 -20.68644 -20.24536 -18.92185 -17.23473 -16.90484 -16.60870 -15.87418 -15.41751 -15.06196 -14.85273 -14.54068 -14.12755 -13.87062 -13.67818 -13.40122 -13.07989 -12.65533 -12.62603 -12.27951 -12.05102 -11.96135 -11.84614 -11.61622 -11.51647 -11.37812 -11.02637 -10.89305 -10.82592 -10.77394 -10.30364 -10.25072 -9.91751 -9.67686 -9.55364 -8.90730 -8.76355 -8.59523 -6.98821 -5.80414 -3.09480 2.72723 3.07362 3.41728 3.46341 3.47359 3.79612 4.29558 4.44075 4.57022 4.68220 4.80028 4.89337 4.98944 5.04416 5.09955 5.13090 5.22251 5.24683 5.40651 5.45286 5.48425 5.50801 5.51514 5.65380 5.73256 5.86855 5.87400 5.93364 5.97470 6.03263 6.15708 6.25573 6.33392 6.53119 6.63314 6.67364 6.70999 6.73143 7.10224 7.65541 7.66364 8.37086 8.38109 9.49095 10.06676 10.41047 11.41881 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.002799 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.832979 B =10002.684789 C =10521.387212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 H 0.053 0.947 4 C -0.117 4.117 5 C -0.132 4.132 6 C 0.039 3.961 7 N -0.494 5.494 8 C 0.027 3.973 9 C 0.513 3.487 10 O -0.525 6.525 11 N -0.710 5.710 12 C 0.118 3.882 13 H 0.094 0.906 14 C -0.160 4.160 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.285 1.285 26 C -0.176 4.176 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.399 0.601 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.085 0.915 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 1.878 -25.661 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 H 0.071 0.929 4 C -0.155 4.155 5 C -0.171 4.171 6 C -0.088 4.088 7 N -0.219 5.219 8 C -0.105 4.105 9 C 0.298 3.702 10 O -0.400 6.400 11 N -0.362 5.362 12 C 0.012 3.988 13 H 0.112 0.888 14 C -0.199 4.199 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.218 4.218 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.422 0.667 -25.506 25.518 hybrid contribution -0.045 1.550 0.819 1.754 sum 0.377 2.217 -24.687 24.789 Atomic orbital electron populations 1.21697 0.93574 1.02741 1.01485 1.22830 0.96236 0.95629 0.90301 0.92911 1.22510 0.96199 1.00172 0.96660 1.22418 0.97223 1.02097 0.95323 1.22891 0.88759 1.02340 0.94832 1.64524 1.19916 1.36120 1.01292 1.22195 1.03026 0.94646 0.90595 1.20388 0.77570 0.88550 0.83648 1.90685 1.50142 1.15213 1.83933 1.45709 1.68717 1.12189 1.09545 1.21781 0.97478 0.94974 0.84544 0.88756 1.23857 0.99379 0.99716 0.96988 1.21615 0.92819 0.94743 0.85355 0.90907 1.42396 1.35151 1.58383 0.99093 1.19246 1.06559 1.23138 0.88749 0.91181 1.24771 0.98903 1.00597 0.96580 1.69649 1.35352 1.44561 1.08438 0.86262 0.81093 0.79451 0.79328 1.21653 1.21240 1.21214 1.24294 0.97772 1.02580 0.97155 0.92595 0.92244 0.91603 0.91128 0.90494 0.91689 0.90894 0.94271 0.89042 0.87672 0.92091 0.76728 0.91869 0.89091 0.78016 0.93362 0.89649 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.50 37.16 0.35 -0.68 16 2 C 0.06 0.48 2.92 -65.78 -0.19 0.29 16 3 H 0.05 0.40 8.02 -51.93 -0.42 -0.02 16 4 C -0.12 -0.86 6.50 -24.87 -0.16 -1.02 16 5 C -0.13 -1.06 6.93 -25.37 -0.18 -1.23 16 6 C 0.04 0.42 5.66 -2.75 -0.02 0.40 16 7 N -0.49 -5.35 4.69 -224.05 -1.05 -6.40 16 8 C 0.03 0.27 5.17 -4.98 -0.03 0.25 16 9 C 0.51 6.97 7.51 -10.99 -0.08 6.89 16 10 O -0.52 -9.17 14.64 5.56 0.08 -9.09 16 11 N -0.71 -9.09 5.26 -53.02 -0.28 -9.37 16 12 C 0.12 1.80 4.32 -67.12 -0.29 1.51 16 13 H 0.09 1.54 7.46 -51.93 -0.39 1.15 16 14 C -0.16 -2.52 7.58 -25.92 -0.20 -2.72 16 15 C 0.17 3.20 4.36 -67.12 -0.29 2.90 16 16 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 17 N -0.71 -17.62 5.40 -52.64 -0.28 -17.91 16 18 C -0.25 -6.75 9.97 -15.06 -0.15 -6.91 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.18 -3.14 7.68 -25.92 -0.20 -3.34 16 27 H 0.05 0.42 7.35 -51.93 -0.38 0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.40 7.64 -51.93 -0.40 0.00 16 35 H 0.09 1.17 7.32 -51.93 -0.38 0.79 16 36 H 0.11 0.93 7.30 -51.93 -0.38 0.55 16 37 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 38 H 0.40 4.15 8.70 -40.82 -0.36 3.80 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.49 8.12 -51.93 -0.42 1.06 16 41 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -32.23 352.65 -9.66 -41.89 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.62 Total: 9.78 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.52 Total: -4.11 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.89 Total: -60.97 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.23 -9.66 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020585316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.163 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds